Rroxscaffold_6G00429190

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000131
Physical Location & Seq
Reverse (-)
49539282 .. 49540041
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429190.1

Sequence Viewer

Length: 726 bp
ATGGAAGAACAAAGCTGGAATCAAGCTCCGCATGACATAGAAAACCCTTATACCCCACTAGTAACTTCCGTAACAAAAGACTTGGATAGCTTGTCTCCGTTGTCCTCTGAATGTTGTATATACAGAGTTCCTAAGCAGCTACGCTATGTAAGTGAAAATGCCTACACCCCTAAGGTGGTCTCTATCAGCCCACTTCACCATGGCAAGGAAGGCTTGAATGGAATGGAAGAGCAAAAGAAGAGGTACCTACAGGCTTTTCTAGTTCGGACACAAGTGAGTTTGGAGGACTATGTCAAGAGAATAAAGGACAAGGAAACAATGCTACGCAGTTGTTATGCAGAACCTATCAAGTTGAGCATGGACACCGCGTTCGTCATTGAGATCTTGTTGAAATATAGTTTTCCTGAATTGCGTGACGAAAATGACCGCATTTTTAACAAACCAAGTATGCTGCAAGATGTGTGGCCTGACATGCAATTGCTTGAAAATCAATTGCCATTCTTCATTCTTGATGATCTTTTTGAGCCCCAGAAAGTTAGAATCTCTTCTAAGAGTGACAGTAGTGAGAGGCTTTCGATAACTAATTTGTCTGAAAAATTTGTCACGTCTCAAATGCATATAGAGGGAGTGGAAGATTGTATGAAGAGGATATCTAAAGCAGATCATTTTGTTGATTTCATAAGAACTTTATGTCTACCTTCGGAGTTTTCACATGAAGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

241

Amino Acids

28.02

Weight (kDa)

5.25

Isoelectric Point (pI)

59.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 40 - 235 3e-45 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 694
AccII CGCG 1 cut(s) 368
AciI CCGC 3 cut(s) 29, 366, 427
AcsI RAATTY 1 cut(s) 596
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 175, 205
AgsI TTSAA 3 cut(s) 217, 391, 485
AhlI ACTAGT 1 cut(s) 58
AjiI CACGTC 1 cut(s) 606
AloI GAACNNNNNNTCC 2 cut(s) 353, 385
AluBI AGCT 4 cut(s) 15, 26, 90, 139
AluI AGCT 4 cut(s) 15, 26, 90, 139
Alw26I GTCTC 3 cut(s) 99, 184, 612
AoxI GGCC 1 cut(s) 464
ApeKI GCWGC 2 cut(s) 136, 451
ApoI RAATTY 1 cut(s) 596
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
Asp700I GAANNNNTTC 1 cut(s) 544
Asp718I GGTACC 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 188
AxyI CCTNAGG 1 cut(s) 171
BanI GGYRCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 528
BbvI GCAGC 2 cut(s) 148, 438
BcoDI GTCTC 3 cut(s) 99, 184, 612
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 2 cut(s) 59, 260
BfmI CTRYAG 1 cut(s) 248
BglII AGATCT 1 cut(s) 381
BisI GCNGC 2 cut(s) 137, 452
BlsI GCNGC 2 cut(s) 138, 453
BmgBI CACGTC 1 cut(s) 606
BmiI GGNNCC 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 205
Bse21I CCTNAGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 175, 205
BseXI GCAGC 2 cut(s) 148, 438
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 1 cut(s) 466
BshNI GGYRCC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 175, 205
BsmAI GTCTC 3 cut(s) 99, 184, 612
BsmBI CGTCTC 1 cut(s) 612
BsnI GGCC 1 cut(s) 466
Bso31I GGTCTC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 528
Bsp143I GATC 3 cut(s) 381, 514, 661
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 3 cut(s) 29, 366, 427
BspANI GGCC 1 cut(s) 466
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 3 cut(s) 381, 514, 661
BssT1I CCWWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 560
Bst6I CTCTTC 4 cut(s) 222, 233, 550, 638
BstDEI CTNAG 3 cut(s) 132, 171, 549
BstDSI CCRYGG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 368
BstKTI GATC 3 cut(s) 384, 517, 664
BstMAI GTCTC 3 cut(s) 99, 184, 612
BstMBI GATC 3 cut(s) 381, 514, 661
BstMWI GCNNNNNNNGC 2 cut(s) 210, 472
BstNSI RCATGY 1 cut(s) 475
BstSFI CTRYAG 1 cut(s) 248
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 2 cut(s) 148, 438
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 1 cut(s) 466
BtgI CCRYGG 1 cut(s) 199
BtrI CACGTC 1 cut(s) 606
Csp6I GTAC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 443, 478
CviAII CATG 5 cut(s) 32, 200, 358, 472, 713
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 3 cut(s) 132, 171, 549
DpnI GATC 3 cut(s) 383, 516, 663
DpnII GATC 3 cut(s) 381, 514, 661
Eam1104I CTCTTC 4 cut(s) 222, 233, 550, 638
EarI CTCTTC 4 cut(s) 222, 233, 550, 638
Eco130I CCWWGG 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 528
Eco31I GGTCTC 1 cut(s) 184
Eco32I GATATC 1 cut(s) 651
Eco81I CCTNAGG 1 cut(s) 171
EcoRV GATATC 1 cut(s) 651
EcoT14I CCWWGG 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 618
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 612
FaeI CATG 5 cut(s) 35, 203, 361, 475, 716
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FatI CATG 5 cut(s) 31, 199, 357, 471, 712
FblI GTMKAC 1 cut(s) 694
Fnu4HI GCNGC 2 cut(s) 137, 452
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 2 cut(s) 137, 452
FspBI CTAG 2 cut(s) 59, 260
GluI GCNGC 2 cut(s) 137, 452
HaeIII GGCC 1 cut(s) 466
Hin1II CATG 5 cut(s) 35, 203, 361, 475, 716
HinfI GANTC 2 cut(s) 19, 540
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 695
Hpy188I TCNGA 4 cut(s) 109, 267, 592, 703
Hpy188III TCNNGA 3 cut(s) 295, 404, 509
Hpy8I GTNNAC 1 cut(s) 695
HpyAV CCTTC 2 cut(s) 203, 708
HpyCH4III ACNGT 1 cut(s) 560
HpyCH4IV ACGT 1 cut(s) 605
HpyCH4V TGCA 4 cut(s) 338, 454, 475, 616
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 472
HpyF3I CTNAG 3 cut(s) 132, 171, 549
HpySE526I ACGT 1 cut(s) 605
Hsp92II CATG 5 cut(s) 35, 203, 361, 475, 716
KpnI GGTACC 1 cut(s) 247
Kzo9I GATC 3 cut(s) 381, 514, 661
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 4 cut(s) 236, 417, 480, 542
Lsp1109I GCAGC 2 cut(s) 148, 438
MaeI CTAG 2 cut(s) 59, 260
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 5 cut(s) 61, 70, 413, 554, 601
MalI GATC 3 cut(s) 383, 516, 663
MboI GATC 3 cut(s) 381, 514, 661
MboII GAAGA 7 cut(s) 17, 239, 250, 493, 537, 644, 655
MfeI CAATTG 2 cut(s) 476, 491
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 528
MluCI AATT 5 cut(s) 407, 476, 491, 583, 596
MmeI TCCRAC 1 cut(s) 700
MnlI CCTC 6 cut(s) 115, 234, 277, 561, 616, 639
Mph1103I ATGCAT 1 cut(s) 618
MroXI GAANNNNTTC 1 cut(s) 544
MseI TTAA 1 cut(s) 435
MunI CAATTG 2 cut(s) 476, 491
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 210, 472
NcoI CCATGG 1 cut(s) 199
NdeII GATC 3 cut(s) 381, 514, 661
NlaIII CATG 5 cut(s) 35, 203, 361, 475, 716
NlaIV GGNNCC 1 cut(s) 245
NmuCI GTSAC 3 cut(s) 413, 554, 601
NsiI ATGCAT 1 cut(s) 618
NspI RCATGY 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 544
PfeI GAWTC 2 cut(s) 19, 540
PflFI GACNNNGTC 1 cut(s) 290
PkrI GCNGC 2 cut(s) 138, 453
PspN4I GGNNCC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 381
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 2 cut(s) 137, 452
Sau3AI GATC 3 cut(s) 381, 514, 661
SduI GDGCHC 1 cut(s) 528
SfcI CTRYAG 1 cut(s) 248
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 5 cut(s) 407, 476, 491, 583, 596
SsiI CCGC 3 cut(s) 29, 366, 427
SspMI CTAG 2 cut(s) 59, 260
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 560
TaiI ACGT 1 cut(s) 608
TaqI TCGA 1 cut(s) 575
TasI AATT 5 cut(s) 407, 476, 491, 583, 596
TfiI GAWTC 2 cut(s) 19, 540
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TseFI GTSAC 3 cut(s) 413, 554, 601
TseI GCWGC 2 cut(s) 136, 451
Tsp45I GTSAC 3 cut(s) 413, 554, 601
TspDTI ATGAA 3 cut(s) 493, 656, 667
TspGWI ACGGA 2 cut(s) 58, 87
Tth111I GACNNNGTC 1 cut(s) 290
XapI RAATTY 1 cut(s) 596
XceI RCATGY 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 694
XmnI GAANNNNTTC 1 cut(s) 544
XspI CTAG 2 cut(s) 59, 260
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.