Rroxscaffold_7G00170710

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000131
Physical Location & Seq
Reverse (-)
11096229 .. 11096915
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170710.1

Sequence Viewer

Length: 687 bp
ATGAGAATATCGGGTATAGAAGGAACTGCGCAGGAAAATGTGGTCAATATACGTTCTCAACAAGTAAAAGTAAAACATCTTCTTGATCTGTTGAGAACGTTATTGATACTACCAATTTCGAAATCACAAATTAGAGGGACTTTTCAACATTTTCCTAGCACGACAAAGCTACACCAAGCAGGGGTGAAGTTTAAAGTTGGACCAAGCAAAAACTTGTTCAGCATACGATTCACTGATGGAATTTTGGAAATTCCAAATTTAACTATTGAGGATAACACAGAGCTCATAATGAGAAATGTTGTTGCCTACGAGCAATGTGAATTTCCCTTCGAACTTCACATAAGTGCTTATGTTGTCATCCTTGATTATTTTGTAGATACTGCAAAAGATGTGGAGTTACTTGTCAATTCTGGTATTATTAAAAATTGTCTATGTGACAACAAGGAGGTTTCTCGTTTGATCAACAGTCTCAGCAGTGGAGTTGCACTGTTTCATGATGAATTTTATTTCTCTACAGTTTCTCAAAAAATGAGCGAGTATTGCGATGTGAGCGGGCATAAAAGCATAGCAAATTTAAGGCAAAATTATTTCAACACACCTTGGCGTACCATCTCTGTGGTTGCAGCTGGTACTTTCCTTGTACTCACTTTTGCTCAAACTGTGTGCTCTGTTATCTCAGTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

228

Amino Acids

25.58

Weight (kDa)

7.0

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 18 - 215 3.3e-56 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 30
AccBSI CCGCTC 1 cut(s) 552
AciI CCGC 1 cut(s) 552
AclI AACGTT 1 cut(s) 98
AcsI RAATTY 6 cut(s) 240, 249, 256, 320, 500, 571
AfaI GTAC 3 cut(s) 607, 631, 642
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 2 cut(s) 146, 592
AleI CACNNNNGTG 1 cut(s) 342
AluBI AGCT 3 cut(s) 169, 283, 626
AluI AGCT 3 cut(s) 169, 283, 626
Alw21I GWGCWC 2 cut(s) 285, 668
Alw26I GTCTC 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 6 cut(s) 240, 249, 256, 320, 500, 571
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 196
AsuII TTCGAA 2 cut(s) 119, 330
AvaII GGWCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 285
BarI GAAGNNNNNNTAC 2 cut(s) 63, 95
Bbv12I GWGCWC 2 cut(s) 285, 668
BbvI GCAGC 1 cut(s) 635
BccI CCATC 2 cut(s) 230, 617
BclI TGATCA 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 513
BisI GCNGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 625
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
Bpu14I TTCGAA 2 cut(s) 119, 330
BsaJI CCNNGG 1 cut(s) 599
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 599
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 484
BseXI GCAGC 1 cut(s) 635
BsiHKAI GWGCWC 2 cut(s) 285, 668
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 473
BsmFI GGGAC 1 cut(s) 151
Bsp119I TTCGAA 2 cut(s) 119, 330
Bsp1286I GDGCHC 2 cut(s) 285, 668
Bsp143I GATC 2 cut(s) 85, 459
BspACI CCGC 1 cut(s) 552
BspCNI CTCAG 1 cut(s) 483
BspHI TCATGA 1 cut(s) 493
BspT104I TTCGAA 2 cut(s) 119, 330
BsrBI CCGCTC 1 cut(s) 552
BsrDI GCAATG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 599
BssMI GATC 2 cut(s) 85, 459
BssT1I CCWWGG 1 cut(s) 599
Bst4CI ACNGT 4 cut(s) 467, 489, 517, 661
BstBI TTCGAA 2 cut(s) 119, 330
BstC8I GCNNGC 1 cut(s) 554
BstDEI CTNAG 2 cut(s) 470, 676
BstF5I GGATG 1 cut(s) 357
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 2 cut(s) 88, 462
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 2 cut(s) 85, 459
BstMWI GCNNNNNNNGC 2 cut(s) 540, 549
BstSFI CTRYAG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 635
BstXI CCANNNNNNTGG 1 cut(s) 616
BtgZI GCGATG 1 cut(s) 558
BtsCI GGATG 1 cut(s) 357
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 3 cut(s) 231, 481, 485
Cac8I GCNNGC 1 cut(s) 554
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 3 cut(s) 606, 630, 641
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 1 cut(s) 494
CviJI RGCY 3 cut(s) 169, 283, 626
CviKI_1 RGCY 3 cut(s) 169, 283, 626
CviQI GTAC 3 cut(s) 606, 630, 641
DdeI CTNAG 2 cut(s) 470, 676
DpnI GATC 2 cut(s) 87, 461
DpnII GATC 2 cut(s) 85, 459
DraI TTTAAA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 599
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 599
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 599
FaeI CATG 1 cut(s) 497
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 493
FauI CCCGC 1 cut(s) 545
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 1 cut(s) 624
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 624
FspBI CTAG 1 cut(s) 156
FspI TGCGCA 1 cut(s) 30
GlaI GCGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 624
HhaI GCGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 497
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 1 cut(s) 228
HphI GGTGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 83, 494
HpyAV CCTTC 2 cut(s) 14, 337
HpyCH4III ACNGT 4 cut(s) 467, 489, 517, 661
HpyCH4IV ACGT 2 cut(s) 52, 98
HpyCH4V TGCA 3 cut(s) 383, 485, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 540, 549
HpyF3I CTNAG 2 cut(s) 470, 676
HpySE526I ACGT 2 cut(s) 52, 98
Hsp92II CATG 1 cut(s) 497
HspAI GCGC 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 2 cut(s) 85, 459
LpnPI CCDG 4 cut(s) 17, 165, 396, 612
Lsp1109I GCAGC 1 cut(s) 635
MaeI CTAG 1 cut(s) 156
MaeII ACGT 2 cut(s) 52, 98
MaeIII GTNAC 2 cut(s) 396, 434
MalI GATC 2 cut(s) 87, 461
MbiI CCGCTC 1 cut(s) 552
MboI GATC 2 cut(s) 85, 459
MboII GAAGA 1 cut(s) 71
MhlI GDGCHC 2 cut(s) 285, 668
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 3 cut(s) 128, 262, 439
MseI TTAA 5 cut(s) 192, 260, 420, 575, 685
MslI CAYNNNNRTG 2 cut(s) 342, 614
MspA1I CMGCKG 1 cut(s) 626
MwoI GCNNNNNNNGC 2 cut(s) 540, 549
NdeII GATC 2 cut(s) 85, 459
NlaIII CATG 1 cut(s) 497
NmuCI GTSAC 1 cut(s) 434
NsbI TGCGCA 1 cut(s) 30
NspV TTCGAA 2 cut(s) 119, 330
OliI CACNNNNGTG 1 cut(s) 342
PagI TCATGA 1 cut(s) 493
PfeI GAWTC 1 cut(s) 228
PkrI GCNGC 1 cut(s) 625
Psp124BI GAGCTC 1 cut(s) 285
Psp1406I AACGTT 1 cut(s) 98
PspPI GGNCC 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 3 cut(s) 607, 631, 642
RsaNI GTAC 3 cut(s) 606, 630, 641
RseI CAYNNNNRTG 2 cut(s) 342, 614
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 5 cut(s) 192, 260, 420, 575, 685
SatI GCNGC 1 cut(s) 624
Sau3AI GATC 2 cut(s) 85, 459
Sau96I GGNCC 1 cut(s) 200
SduI GDGCHC 2 cut(s) 285, 668
SetI ASST 7 cut(s) 55, 101, 171, 285, 450, 601, 628
SfcI CTRYAG 1 cut(s) 513
SfuI TTCGAA 2 cut(s) 119, 330
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 2 cut(s) 342, 614
SsiI CCGC 1 cut(s) 552
SspMI CTAG 1 cut(s) 156
SstI GAGCTC 1 cut(s) 285
StyI CCWWGG 1 cut(s) 599
TaaI ACNGT 4 cut(s) 467, 489, 517, 661
TaiI ACGT 2 cut(s) 55, 101
TaqI TCGA 2 cut(s) 119, 330
TatI WGTACW 1 cut(s) 640
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 5 cut(s) 192, 260, 420, 575, 685
Tru9I TTAA 5 cut(s) 192, 260, 420, 575, 685
TscAI CASTG 3 cut(s) 238, 481, 492
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 1 cut(s) 623
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 2 cut(s) 482, 513
TspRI CASTG 3 cut(s) 238, 481, 492
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 6 cut(s) 240, 249, 256, 320, 500, 571
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.