MD08G1146500.v1.1

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000131
Physical Location & Seq
Reverse (-)
14668312 .. 14668815
504 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1146500.v1.1.491

Sequence Viewer

Length: 504 bp
ATGAATCAGGAGTTGGATGTTTTGGCTCCCTTGTCCTCTTCGTGTTGTATCTACAGAGTTCCTGAACGACTGCGGCGTGTAAGTGAAAAGGCCCACACACCTCAAGTAGTCTCTATAGGTCCTCTTCACCATGGAAAGAAAGGCCTACAAGCAATGGAAGAGCACAAAAAGCGGTACCTACGAGATTTTATACGCAGAACCAGGGTCAGCTTGGAGGACTATATAAAGATAATAAAGGACCAAGAGGGCAAGATACGCAGTTGTTACGCAGAAACTATCGAGTTTAGCAGTGATGACTTTGTGAGAATTGTTCTAGTGGATGCAGCATTCATTATTGAGGTCTTGTTGAGGCACCGTTTCCATGAATTGCAGGACGAGAATGATCGTATATTTAACAAACCATGGATGCTGCAGGACGTATGGCCTGACATACGGCTGCTTGAAAATCAGTTGCCATTCTTCGTTCTTGAGGATGTTTTTGACCCAGATATAACCCCTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

168

Amino Acids

19.79

Weight (kDa)

5.88

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 17 - 162 1.4e-53 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 174
AccB1I GGYRCC 2 cut(s) 174, 351
AciI CCGC 2 cut(s) 73, 172
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 1 cut(s) 443
AjnI CCWGG 1 cut(s) 200
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 115
AoxI GGCC 3 cut(s) 90, 142, 422
ApeKI GCWGC 3 cut(s) 323, 409, 436
Asp718I GGTACC 1 cut(s) 174
AspS9I GGNCC 3 cut(s) 91, 119, 238
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 2 cut(s) 119, 238
BanI GGYRCC 2 cut(s) 174, 351
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 3 cut(s) 335, 396, 423
BceAI ACGGC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 314
BfmI CTRYAG 3 cut(s) 52, 114, 410
BisI GCNGC 4 cut(s) 74, 324, 410, 437
BlsI GCNGC 4 cut(s) 75, 325, 411, 438
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 2 cut(s) 119, 238
BmgT120I GGNCC 3 cut(s) 91, 119, 238
BmiI GGNNCC 3 cut(s) 27, 176, 353
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 2 cut(s) 310, 396
BpuEI CTTGAG 2 cut(s) 87, 488
BsaJI CCNNGG 3 cut(s) 130, 201, 401
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 3 cut(s) 130, 201, 401
BseGI GGATG 4 cut(s) 22, 325, 411, 478
BseMI GCAATG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 335, 396, 423
BshFI GGCC 3 cut(s) 92, 144, 424
BshNI GGYRCC 2 cut(s) 174, 351
BsiHKAI GWGCWC 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 3 cut(s) 92, 144, 424
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 382
Bsp19I CCATGG 2 cut(s) 130, 401
BspACI CCGC 2 cut(s) 73, 172
BspANI GGCC 3 cut(s) 92, 144, 424
BspLI GGNNCC 3 cut(s) 27, 176, 353
BspMAI CTGCAG 1 cut(s) 414
BspQI GCTCTTC 1 cut(s) 153
BspT107I GGYRCC 2 cut(s) 174, 351
BsrDI GCAATG 1 cut(s) 159
BssECI CCNNGG 3 cut(s) 130, 201, 401
BssMI GATC 1 cut(s) 382
BssT1I CCWWGG 2 cut(s) 130, 401
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 3 cut(s) 43, 129, 153
BstDSI CCRYGG 2 cut(s) 130, 401
BstF5I GGATG 4 cut(s) 22, 325, 411, 478
BstKTI GATC 1 cut(s) 385
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 382
BstMWI GCNNNNNNNGC 2 cut(s) 169, 255
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 200
BstSFI CTRYAG 3 cut(s) 52, 114, 410
BstV1I GCAGC 3 cut(s) 335, 396, 423
BsuRI GGCC 3 cut(s) 92, 144, 424
BtgI CCRYGG 2 cut(s) 130, 401
BtsCI GGATG 4 cut(s) 22, 325, 411, 478
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 295
Cfr13I GGNCC 3 cut(s) 91, 119, 238
Csp6I GTAC 1 cut(s) 175
CviAII CATG 3 cut(s) 131, 362, 402
CviJI RGCY 6 cut(s) 26, 92, 144, 210, 424, 436
CviKI_1 RGCY 6 cut(s) 26, 92, 144, 210, 424, 436
CviQI GTAC 1 cut(s) 175
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
Eam1104I CTCTTC 3 cut(s) 43, 129, 153
EarI CTCTTC 3 cut(s) 43, 129, 153
Eco130I CCWWGG 2 cut(s) 130, 401
Eco147I AGGCCT 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 119, 238
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 200
EcoT14I CCWWGG 2 cut(s) 130, 401
ErhI CCWWGG 2 cut(s) 130, 401
FaeI CATG 3 cut(s) 134, 365, 405
FatI CATG 3 cut(s) 130, 361, 401
Fnu4HI GCNGC 4 cut(s) 74, 324, 410, 437
FokI GGATG 4 cut(s) 29, 332, 418, 485
Fsp4HI GCNGC 4 cut(s) 74, 324, 410, 437
FspBI CTAG 1 cut(s) 314
GluI GCNGC 4 cut(s) 74, 324, 410, 437
HaeIII GGCC 3 cut(s) 92, 144, 424
Hin1II CATG 3 cut(s) 134, 365, 405
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 119
Hpy188III TCNNGA 3 cut(s) 8, 62, 467
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 3 cut(s) 323, 370, 412
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 255
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 3 cut(s) 134, 365, 405
KpnI GGTACC 1 cut(s) 178
Kzo9I GATC 1 cut(s) 382
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 7 cut(s) 75, 187, 214, 356, 398, 438, 498
Lsp1109I GCAGC 3 cut(s) 335, 396, 423
LweI GCATC 2 cut(s) 310, 396
MaeI CTAG 1 cut(s) 314
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 263
MalI GATC 1 cut(s) 384
MboI GATC 1 cut(s) 382
MboII GAAGA 4 cut(s) 30, 116, 170, 451
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 2 cut(s) 306, 365
MnlI CCTC 8 cut(s) 46, 111, 132, 208, 238, 331, 342, 463
MseI TTAA 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 202
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 169, 255
NcoI CCATGG 2 cut(s) 130, 401
NdeII GATC 1 cut(s) 382
NlaIII CATG 3 cut(s) 134, 365, 405
NlaIV GGNNCC 3 cut(s) 27, 176, 353
PceI AGGCCT 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 153
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PctI GAATGC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 4 cut(s) 75, 325, 411, 438
PpuMI RGGWCCY 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 3 cut(s) 27, 176, 353
PspPI GGNCC 3 cut(s) 91, 119, 238
PspPPI RGGWCCY 1 cut(s) 119
PstI CTGCAG 1 cut(s) 414
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 4 cut(s) 74, 324, 410, 437
Sau3AI GATC 1 cut(s) 382
Sau96I GGNCC 3 cut(s) 91, 119, 238
ScrFI CCNGG 1 cut(s) 202
SduI GDGCHC 1 cut(s) 165
SetI ASST 6 cut(s) 103, 121, 180, 212, 342, 420
SfaNI GCATC 2 cut(s) 310, 396
SfcI CTRYAG 3 cut(s) 52, 114, 410
SinI GGWCC 2 cut(s) 119, 238
SmlI CTYRAG 2 cut(s) 102, 467
SmoI CTYRAG 2 cut(s) 102, 467
Sse9I AATT 2 cut(s) 306, 365
SseBI AGGCCT 1 cut(s) 144
SsiI CCGC 2 cut(s) 73, 172
SspMI CTAG 1 cut(s) 314
StuI AGGCCT 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 2 cut(s) 130, 401
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 1 cut(s) 420
TaqI TCGA 1 cut(s) 279
TasI AATT 2 cut(s) 306, 365
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 1 cut(s) 295
TseI GCWGC 3 cut(s) 323, 409, 436
TspDTI ATGAA 3 cut(s) 17, 319, 378
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 2 cut(s) 119, 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.