Rmu_sc0001673.1_g000024

Plant protein of unknown function

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001673.1
Physical Location & Seq
Forward (+)
117223 .. 118416
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001673.1_g000024.1.cds

Sequence Viewer

Length: 552 bp
atgcacaaagatgaaggaacagaaggcaacttggaggacatcatctgttcttctaaaccacaacactttgttgatcttctaagatgtttctatgtaagagaccactacatgaaagcaaaagctaaaggaaaaatgaggactgtaccaagcgtaagagagctgcaacaaggtgaagtcaagtttgaggtactagattcgagcaacaacttacttgacataaaattccatgctgatactaagactctgaaaattccaaaagttataataagtcatgaaactgagctcactatcaggaatgttcttgcctttgagcaatgtcatcacactcttgccgagaattacatgactgattatgttgtgttcatggatcgtttcatgagcgcccaagaagatgtgaagctagatcgatatggctaccttgcaaaaattcaagctcctcgccactcaatgccccgtcgtcgcctgaagccccacgcacagcccatccgccagccccgtcatccacctccgccgattgcctcgccggagtacctcatccgatgctcccactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

183

Amino Acids

21.39

Weight (kDa)

9.02

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 263
AciI CCGC 2 cut(s) 487, 509
AclWI GGATC 1 cut(s) 375
AcsI RAATTY 3 cut(s) 221, 249, 426
AcuI CTGAAG 1 cut(s) 485
AfaI GTAC 3 cut(s) 144, 189, 530
AgsI TTSAA 1 cut(s) 431
AluBI AGCT 5 cut(s) 122, 160, 283, 400, 434
AluI AGCT 5 cut(s) 122, 160, 283, 400, 434
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 3 cut(s) 221, 249, 426
AspLEI GCGC 1 cut(s) 383
AsuHPI GGTGA 1 cut(s) 182
BanII GRGCYC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 491
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 2 cut(s) 191, 401
BfoI RGCGCY 1 cut(s) 384
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
BmsI GCATC 1 cut(s) 530
Bsa29I ATCGAT 1 cut(s) 406
BsaI GGTCTC 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 320
BseCI ATCGAT 1 cut(s) 406
BseGI GGATG 3 cut(s) 483, 499, 534
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 270
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 1 cut(s) 147
BshVI ATCGAT 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 1 cut(s) 524
BsmAI GTCTC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 3 cut(s) 73, 367, 403
BspACI CCGC 2 cut(s) 487, 509
BspCNI CTCAG 1 cut(s) 271
BspDI ATCGAT 1 cut(s) 406
BspHI TCATGA 2 cut(s) 271, 375
BspPI GGATC 1 cut(s) 375
BspTNI GGTCTC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 320
BssMI GATC 3 cut(s) 73, 367, 403
Bst4CI ACNGT 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 3 cut(s) 80, 237, 279
BstF5I GGATG 3 cut(s) 483, 499, 534
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 3 cut(s) 76, 370, 406
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 3 cut(s) 73, 367, 403
BstV1I GCAGC 1 cut(s) 147
Bsu15I ATCGAT 1 cut(s) 406
BsuTUI ATCGAT 1 cut(s) 406
BtsCI GGATG 3 cut(s) 483, 499, 534
Cac8I GCNNGC 1 cut(s) 491
CciI TCATGA 2 cut(s) 271, 375
CfoI GCGC 1 cut(s) 383
ClaI ATCGAT 1 cut(s) 406
Csp6I GTAC 3 cut(s) 143, 188, 529
CviAII CATG 6 cut(s) 109, 227, 272, 343, 364, 376
CviJI RGCY 9 cut(s) 122, 160, 283, 400, 414, 434, 469, 481, 493
CviKI_1 RGCY 9 cut(s) 122, 160, 283, 400, 414, 434, 469, 481, 493
CviQI GTAC 3 cut(s) 143, 188, 529
DdeI CTNAG 3 cut(s) 80, 237, 279
DpnI GATC 3 cut(s) 75, 369, 405
DpnII GATC 3 cut(s) 73, 367, 403
EciI GGCGGA 2 cut(s) 476, 498
Ecl136II GAGCTC 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 93
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 285
FaeI CATG 6 cut(s) 112, 230, 275, 346, 367, 379
FatI CATG 6 cut(s) 108, 226, 271, 342, 363, 375
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 3 cut(s) 470, 486, 521
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 2 cut(s) 191, 401
GlaI GCGC 1 cut(s) 382
GluI GCNGC 1 cut(s) 161
HaeII RGCGCY 1 cut(s) 384
HapII CCGG 1 cut(s) 524
HhaI GCGC 1 cut(s) 383
Hin1II CATG 6 cut(s) 112, 230, 275, 346, 367, 379
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HinfI GANTC 2 cut(s) 194, 241
HpaII CCGG 1 cut(s) 524
HphI GGTGA 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 246, 539
Hpy188III TCNNGA 3 cut(s) 272, 292, 376
Hpy99I CGWCG 2 cut(s) 459, 462
HpyAV CCTTC 2 cut(s) 8, 17
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 4, 163, 422
HpyF3I CTNAG 3 cut(s) 80, 237, 279
Hsp92II CATG 6 cut(s) 112, 230, 275, 346, 367, 379
HspAI GCGC 1 cut(s) 381
Kzo9I GATC 3 cut(s) 73, 367, 403
LmnI GCTCC 2 cut(s) 439, 548
LpnPI CCDG 4 cut(s) 277, 476, 503, 537
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 530
MaeI CTAG 2 cut(s) 191, 401
MalI GATC 3 cut(s) 75, 369, 405
MboI GATC 3 cut(s) 73, 367, 403
MboII GAAGA 3 cut(s) 42, 68, 401
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 4 cut(s) 221, 249, 337, 426
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 7 cut(s) 28, 129, 178, 447, 516, 529, 542
MslI CAYNNNNRTG 1 cut(s) 9
MspI CCGG 1 cut(s) 524
NdeII GATC 3 cut(s) 73, 367, 403
NlaIII CATG 6 cut(s) 112, 230, 275, 346, 367, 379
NmeAIII GCCGAG 1 cut(s) 358
PagI TCATGA 2 cut(s) 271, 375
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PsiI TTATAA 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 285
RsaI GTAC 3 cut(s) 144, 189, 530
RsaNI GTAC 3 cut(s) 143, 188, 529
RseI CAYNNNNRTG 1 cut(s) 9
SacI GAGCTC 1 cut(s) 285
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 3 cut(s) 73, 367, 403
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 9
Sse9I AATT 4 cut(s) 221, 249, 337, 426
SsiI CCGC 2 cut(s) 487, 509
SspMI CTAG 2 cut(s) 191, 401
SstI GAGCTC 1 cut(s) 285
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 2 cut(s) 197, 406
TasI AATT 4 cut(s) 221, 249, 337, 426
TfiI GAWTC 1 cut(s) 194
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 5 cut(s) 27, 125, 288, 352, 364
XapI RAATTY 3 cut(s) 221, 249, 426
XspI CTAG 2 cut(s) 191, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.