Rroxscaffold_7G00185780

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000131
Physical Location & Seq
Forward (+)
25221369 .. 25222791
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185780.1

Sequence Viewer

Length: 579 bp
ATGATCACAATACAAGACAGTACTGAGGTTATAATCAGAAACCTCGTTGCCTTTGAACAATGTTATGCTATTGACAATCACATAACCGATTATGTCATTATGATGGATCGTTTAGTGAACACCCCAGAAGATGTGGACTTGCTTGTTGAGAGTGGCATCATTCAAAATATGTTGGGTGACAGCGCAGCAGTATCAACTCTGATCAATGCTCTTGCCAACGGGTTTGGTATTTTCACTCACTCACTCTTTCTCCCTCCTCCTCCTCTCCCCCCTCCCGGAGCTCCAATCCACCGTGGAAATGGCTACCATCCTTCACCTACTCTCTCTCCGATCGCCGCCTCCTCGGTTTCTTCCCTCACCGACCGCCTTCAATTGCCTTACTACTCCACCGTCAAGATCGGTCGGCTTGTCGACTACTCGTTCTATTGGATCTCTCGATTCGACCCATTTCCGGACTCGCTCGTCACCGACACGGACTTGTCGTCTACGAGGCTCAAAACACCACCGTCAAAGGTCGGTTTGTCATTTCAACTTCCGTTTTCCGGTTTGTGGAAGGGTTTGGATTCTTTTGCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

192

Amino Acids

21.06

Weight (kDa)

4.82

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 2 - 75 3.7e-24 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 32
AasI GACNNNNNNGTC 1 cut(s) 461
AccI GTMKAC 2 cut(s) 411, 485
AccIII TCCGGA 1 cut(s) 451
AciI CCGC 2 cut(s) 336, 364
AclWI GGATC 2 cut(s) 114, 437
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 4 cut(s) 275, 451, 542, 549
AgsI TTSAA 4 cut(s) 56, 164, 371, 530
AhdI GACNNNNNGTC 1 cut(s) 481
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw21I GWGCWC 1 cut(s) 283
AlwI GGATC 2 cut(s) 114, 437
Aor13HI TCCGGA 1 cut(s) 451
ApeKI GCWGC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 4 cut(s) 188, 306, 349, 457
BanII GRGCYC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 197
BccI CCATC 2 cut(s) 97, 315
BclI TGATCA 2 cut(s) 3, 201
BcnI CCSGG 1 cut(s) 276
BisI GCNGC 2 cut(s) 186, 336
BlsI GCNGC 2 cut(s) 187, 337
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 276
BmeRI GACNNNNNGTC 1 cut(s) 481
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 165
BpuMI CCSGG 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 292, 342
BsaWI WCCGGW 2 cut(s) 451, 542
BsaXI ACNNNNNCTCC 4 cut(s) 234, 264, 310, 340
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 451, 542, 549
BseAI TCCGGA 1 cut(s) 451
BseDI CCNNGG 2 cut(s) 292, 342
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 4 cut(s) 275, 451, 542, 549
BseMII CTCAG 1 cut(s) 15
BseRI GAGGAG 4 cut(s) 246, 249, 252, 331
BseXI GCAGC 1 cut(s) 197
Bsh1285I CGRYCG 3 cut(s) 333, 364, 403
BsiEI CGRYCG 3 cut(s) 333, 364, 403
BsiHKAI GWGCWC 1 cut(s) 283
BsiSI CCGG 3 cut(s) 276, 452, 543
BslI CCNNNNNNNGG 4 cut(s) 275, 451, 542, 549
Bsp1286I GDGCHC 1 cut(s) 283
Bsp13I TCCGGA 1 cut(s) 451
Bsp143I GATC 6 cut(s) 3, 106, 201, 330, 396, 429
BspACI CCGC 2 cut(s) 336, 364
BspCNI CTCAG 1 cut(s) 16
BspEI TCCGGA 1 cut(s) 451
BspPI GGATC 2 cut(s) 114, 437
BssECI CCNNGG 2 cut(s) 292, 342
BssMI GATC 6 cut(s) 3, 106, 201, 330, 396, 429
Bst4CI ACNGT 4 cut(s) 20, 293, 391, 507
BstDEI CTNAG 1 cut(s) 24
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 1 cut(s) 307
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 6 cut(s) 6, 109, 204, 333, 399, 432
BstMBI GATC 6 cut(s) 3, 106, 201, 330, 396, 429
BstMCI CGRYCG 3 cut(s) 333, 364, 403
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 1 cut(s) 307
CfoI GCGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 21
CviJI RGCY 4 cut(s) 281, 303, 406, 493
CviKI_1 RGCY 4 cut(s) 281, 303, 406, 493
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 1 cut(s) 24
DpnI GATC 6 cut(s) 5, 108, 203, 332, 398, 431
DpnII GATC 6 cut(s) 3, 106, 201, 330, 396, 429
DrdI GACNNNNNNGTC 1 cut(s) 461
DriI GACNNNNNGTC 1 cut(s) 481
DseDI GACNNNNNNGTC 1 cut(s) 461
Eam1105I GACNNNNNGTC 1 cut(s) 481
Ecl136II GAGCTC 1 cut(s) 281
Eco24I GRGCYC 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 283
FaiI YATR 6 cut(s) 32, 66, 83, 93, 101, 170
FbaI TGATCA 2 cut(s) 3, 201
FblI GTMKAC 2 cut(s) 411, 485
Fnu4HI GCNGC 2 cut(s) 186, 336
FokI GGATG 1 cut(s) 294
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 2 cut(s) 186, 336
GlaI GCGC 1 cut(s) 184
GluI GCNGC 2 cut(s) 186, 336
HapII CCGG 3 cut(s) 276, 452, 543
HhaI GCGC 1 cut(s) 185
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 3 cut(s) 438, 455, 563
HpaII CCGG 3 cut(s) 276, 452, 543
HphI GGTGA 4 cut(s) 188, 306, 349, 457
Hpy166II GTNNAC 4 cut(s) 118, 136, 412, 486
Hpy188I TCNGA 3 cut(s) 38, 201, 330
Hpy188III TCNNGA 3 cut(s) 394, 435, 452
Hpy8I GTNNAC 4 cut(s) 118, 136, 412, 486
HpyAV CCTTC 3 cut(s) 321, 377, 547
HpyCH4III ACNGT 4 cut(s) 20, 293, 391, 507
HpyF3I CTNAG 1 cut(s) 24
HspAI GCGC 1 cut(s) 183
Kpn2I TCCGGA 1 cut(s) 451
Ksp22I TGATCA 2 cut(s) 3, 201
Kzo9I GATC 6 cut(s) 3, 106, 201, 330, 396, 429
LmnI GCTCC 2 cut(s) 278, 286
LpnPI CCDG 4 cut(s) 138, 289, 465, 556
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 176, 463
MalI GATC 6 cut(s) 5, 108, 203, 332, 398, 431
MboI GATC 6 cut(s) 3, 106, 201, 330, 396, 429
MboII GAAGA 2 cut(s) 140, 342
MfeI CAATTG 1 cut(s) 371
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 1 cut(s) 371
MlyI GAGTC 1 cut(s) 449
MroI TCCGGA 1 cut(s) 451
MslI CAYNNNNRTG 1 cut(s) 101
MspI CCGG 3 cut(s) 276, 452, 543
MspR9I CCNGG 1 cut(s) 276
MunI CAATTG 1 cut(s) 371
NciI CCSGG 1 cut(s) 276
NdeII GATC 6 cut(s) 3, 106, 201, 330, 396, 429
NmuCI GTSAC 2 cut(s) 176, 463
PcsI WCGNNNNNNNCGW 1 cut(s) 479
PfeI GAWTC 2 cut(s) 438, 563
PfoI TCCNGGA 1 cut(s) 274
PkrI GCNGC 2 cut(s) 187, 337
Ple19I CGATCG 1 cut(s) 333
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
PsiI TTATAA 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 283
PsuI RGATCY 1 cut(s) 429
PvuI CGATCG 1 cut(s) 333
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 283
SalI GTCGAC 1 cut(s) 410
SatI GCNGC 2 cut(s) 186, 336
Sau3AI GATC 6 cut(s) 3, 106, 201, 330, 396, 429
ScaI AGTACT 1 cut(s) 22
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 283
SetI ASST 5 cut(s) 30, 45, 283, 319, 516
SfaNI GCATC 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 1 cut(s) 371
SsiI CCGC 2 cut(s) 336, 364
SstI GAGCTC 1 cut(s) 283
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 4 cut(s) 20, 293, 391, 507
TaqI TCGA 3 cut(s) 411, 436, 441
TaqII GACCGA 1 cut(s) 389
TasI AATT 1 cut(s) 371
TatI WGTACW 1 cut(s) 20
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 2 cut(s) 438, 563
TseFI GTSAC 2 cut(s) 176, 463
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 2 cut(s) 176, 463
TspGWI ACGGA 2 cut(s) 488, 525
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XmiI GTMKAC 2 cut(s) 411, 485
ZrmI AGTACT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.