Prupe.1G474700_v2.0.a1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000131
Physical Location & Seq
Reverse (-)
39435776 .. 39437366
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G474700.1

Sequence Viewer

Length: 1293 bp
ATGGAAGAGCACAAAAAGAGGTATCTAGCGTATTTTCTACATCGAACCCAAGTAAGCTTGAATAATTATATAAACAAAATAAAGGATCAAGAAGCAAGATGGCGCAGTTATTATGCAGATTTCATTGAGTTTGACAGTGATGAATTTGTAAGAATCATTCCAGTGGATTCAGCCTTCATCATTGAGTTCTTACTGAGGAAGTGTTTTTTAGGATTTAATCATGAAAATGACTACATATTTGAGAAACCACGGATGAAACGCGATATATCGCCTGACTTGGAAGGAACAGAAGACGATTGGGAGAAAAATTTTGTTCCAGGAATAGAGGTAAACCAGTTTGTTGATTTTATGAGAATTTTGTGTCAACCAATGGAACCAAAAACTAGAGGGAAACTTAAATCTCCCACAATACCAAACATGGCAGAGCTACATCAGGCTGGAGTCAAGTTTAAGGTGGGAAAAAGCGAAAGTCTGTTTGACATAAAATTCTCTAGTGGGCTGACATTCAGAAATCTCCTGGCTTTCGAACAATGTCACTGCAAGAACATGAATTACCTAACTAATTATGTTTTCCTCATGAAGCGTTTGGTAAGTTCATCAAAGGATGTGGAGCTGGTTGTTGTTGAGCATGGAATTGTTCAAAATTGGATAGGTGAGAACAGTGGGGTATCTACTTTGCTCAATAACCTTGACAGTGGGGTCATTGTTAGCAACTACTGTTATGCTACTCTATGTGATGAGCTGAACAACGACTGCAGAACTCGCAGGCACAAATGGATGGCAAATTTGAGGCAAAATTATTTTAACACACCGTGGTCAACTGTTTCTGTCATCGCAGCTAGTGTTCTCCTCAAACTCACCAAACATGGGTCGAAGAGATATTCGAATAAGAGAAAGTTTGTGTATTGTATGTCATTGTCACTCTGGCAAGTTGGTGGTAAGATCAGGTTTTGCTCAATCTTTTCATCAAGTTCTTTAACTTATTTGGAAAATGATTTGGAACTTAATGGCATGGGAATGTCTTTATGGTGCACCATTTACATGCTTACACCATACATCCTTCTATACATGTCTACTGGCCATTGTTACCTGGAAAAGAACAACCTCCAAATAACCTTTCAAGTTGGCACTCCAAAACTAAAACTACATCCACCATTTTCTCTTTTTCTTCTTCCAAAAGGCATCATCAGTAAAAGGGCCACGACTCCGCTACGGCAAAACATCAAACACATGGCGTGCACTTTTATTGCTTTCGCATATGACCCGCAGATTCAACCATTTCAGACGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

431

Amino Acids

50.03

Weight (kDa)

8.97

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 698
AccI GTMKAC 1 cut(s) 1073
AccII CGCG 1 cut(s) 261
AciI CCGC 2 cut(s) 1208, 1265
AclWI GGATC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 1078
AcsI RAATTY 5 cut(s) 143, 307, 354, 485, 784
AdeI CACNNNGTG 1 cut(s) 813
AfiI CCNNNNNNNGG 1 cut(s) 867
AflIII ACRYGT 1 cut(s) 1068
AgsI TTSAA 4 cut(s) 61, 641, 1121, 1274
AjnI CCWGG 3 cut(s) 316, 516, 1089
AjuI GAANNNNNNNTTGG 2 cut(s) 1101, 1133
AluBI AGCT 5 cut(s) 57, 427, 613, 742, 839
AluI AGCT 5 cut(s) 57, 427, 613, 742, 839
Alw21I GWGCWC 3 cut(s) 12, 1034, 1241
Alw44I GTGCAC 2 cut(s) 1030, 1237
AlwI GGATC 1 cut(s) 93
AoxI GGCC 2 cut(s) 1078, 1197
ApaLI GTGCAC 2 cut(s) 1030, 1237
ApeKI GCWGC 1 cut(s) 836
ApoI RAATTY 5 cut(s) 143, 307, 354, 485, 784
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 1197
AsuHPI GGTGA 2 cut(s) 665, 850
AsuII TTCGAA 2 cut(s) 525, 884
BaeGI GKGCMC 2 cut(s) 1034, 1241
BalI TGGCCA 1 cut(s) 1080
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 3 cut(s) 12, 1034, 1241
BbvI GCAGC 1 cut(s) 848
BccI CCATC 2 cut(s) 93, 772
BceAI ACGGC 1 cut(s) 1229
BciT130I CCWGG 3 cut(s) 318, 518, 1091
BfaI CTAG 4 cut(s) 26, 384, 492, 840
BfmI CTRYAG 1 cut(s) 754
BisI GCNGC 1 cut(s) 837
BlsI GCNGC 1 cut(s) 838
Bme1390I CCNGG 3 cut(s) 318, 518, 1091
BmgT120I GGNCC 1 cut(s) 1197
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 3 cut(s) 318, 518, 1091
BmsI GCATC 1 cut(s) 1191
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 459
Bpu14I TTCGAA 2 cut(s) 525, 884
BsaJI CCNNGG 2 cut(s) 248, 812
Bsc4I CCNNNNNNNGG 1 cut(s) 867
Bse1I ACTGG 3 cut(s) 161, 334, 1081
BseBI CCWGG 3 cut(s) 318, 518, 1091
BseDI CCNNGG 2 cut(s) 248, 812
BseGI GGATG 5 cut(s) 258, 610, 783, 1056, 1147
BseLI CCNNNNNNNGG 1 cut(s) 867
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 3 cut(s) 161, 334, 1081
BseRI GAGGAG 1 cut(s) 839
BseSI GKGCMC 2 cut(s) 1034, 1241
BseXI GCAGC 1 cut(s) 848
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 1080, 1199
BsiHKAI GWGCWC 3 cut(s) 12, 1034, 1241
BslI CCNNNNNNNGG 1 cut(s) 867
BsnI GGCC 2 cut(s) 1080, 1199
Bsp119I TTCGAA 2 cut(s) 525, 884
Bsp1286I GDGCHC 3 cut(s) 12, 1034, 1241
Bsp143I GATC 2 cut(s) 85, 942
BspACI CCGC 2 cut(s) 1208, 1265
BspANI GGCC 2 cut(s) 1080, 1199
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 2 cut(s) 220, 576
BspLI GGNNCC 1 cut(s) 375
BspMAI CTGCAG 1 cut(s) 758
BspPI GGATC 1 cut(s) 93
BspT104I TTCGAA 2 cut(s) 525, 884
BsrI ACTGG 3 cut(s) 161, 334, 1081
BssECI CCNNGG 2 cut(s) 248, 812
BssMI GATC 2 cut(s) 85, 942
Bst2UI CCWGG 3 cut(s) 318, 518, 1091
Bst4CI ACNGT 6 cut(s) 137, 662, 695, 719, 813, 823
Bst6I CTCTTC 1 cut(s) 869
BstBI TTCGAA 2 cut(s) 525, 884
BstC8I GCNNGC 2 cut(s) 767, 1237
BstDEI CTNAG 1 cut(s) 194
BstDSI CCRYGG 2 cut(s) 248, 812
BstF5I GGATG 5 cut(s) 258, 610, 783, 1056, 1147
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 88, 945
BstMBI GATC 2 cut(s) 85, 942
BstMWI GCNNNNNNNGC 1 cut(s) 762
BstNI CCWGG 3 cut(s) 318, 518, 1091
BstNSI RCATGY 2 cut(s) 1045, 1072
BstSCI CCNGG 3 cut(s) 316, 516, 1089
BstSFI CTRYAG 1 cut(s) 754
BstSLI GKGCMC 2 cut(s) 1034, 1241
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 848
BstV2I GAAGAC 1 cut(s) 297
BsuRI GGCC 2 cut(s) 1080, 1199
BtgI CCRYGG 2 cut(s) 248, 812
BtgZI GCGATG 1 cut(s) 817
BtsCI GGATG 5 cut(s) 258, 610, 783, 1056, 1147
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 5 cut(s) 142, 168, 535, 667, 700
Cac8I GCNNGC 2 cut(s) 767, 1237
CciI TCATGA 2 cut(s) 220, 576
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 1197
CspCI CAANNNNNGTGG 2 cut(s) 588, 623
DdeI CTNAG 1 cut(s) 194
DpnI GATC 2 cut(s) 87, 944
DpnII GATC 2 cut(s) 85, 942
DraIII CACNNNGTG 1 cut(s) 813
DrdI GACNNNNNNGTC 1 cut(s) 698
DseDI GACNNNNNNGTC 1 cut(s) 698
EaeI YGGCCR 1 cut(s) 1078
Eam1104I CTCTTC 1 cut(s) 869
EarI CTCTTC 1 cut(s) 869
EcoRII CCWGG 3 cut(s) 316, 516, 1089
FauI CCCGC 1 cut(s) 1272
FauNDI CATATG 1 cut(s) 1258
FblI GTMKAC 1 cut(s) 1073
Fnu4HI GCNGC 1 cut(s) 837
FokI GGATG 5 cut(s) 265, 617, 790, 1043, 1134
Fsp4HI GCNGC 1 cut(s) 837
FspBI CTAG 4 cut(s) 26, 384, 492, 840
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 837
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 2 cut(s) 1080, 1199
HhaI GCGC 1 cut(s) 105
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 2 cut(s) 365, 819
HindII GTYRAC 2 cut(s) 365, 819
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 5 cut(s) 153, 167, 441, 1204, 1270
HphI GGTGA 2 cut(s) 665, 850
Hpy166II GTNNAC 6 cut(s) 331, 365, 819, 1032, 1074, 1239
Hpy188I TCNGA 2 cut(s) 509, 1284
Hpy188III TCNNGA 3 cut(s) 89, 221, 577
Hpy8I GTNNAC 6 cut(s) 331, 365, 819, 1032, 1074, 1239
HpyAV CCTTC 3 cut(s) 184, 275, 1070
HpyCH4III ACNGT 6 cut(s) 137, 662, 695, 719, 813, 823
HpyCH4V TGCA 5 cut(s) 116, 540, 756, 1032, 1239
HpyF10VI GCNNNNNNNGC 1 cut(s) 762
HpyF3I CTNAG 1 cut(s) 194
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 85, 942
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 1 cut(s) 848
LweI GCATC 1 cut(s) 1191
MaeI CTAG 4 cut(s) 26, 384, 492, 840
MaeIII GTNAC 3 cut(s) 533, 918, 1085
MalI GATC 2 cut(s) 87, 944
MboI GATC 2 cut(s) 85, 942
MboII GAAGA 5 cut(s) 17, 302, 886, 1160, 1163
MhlI GDGCHC 3 cut(s) 12, 1034, 1241
MlsI TGGCCA 1 cut(s) 1080
MluNI TGGCCA 1 cut(s) 1080
MlyI GAGTC 2 cut(s) 450, 1198
MnlI CCTC 8 cut(s) 12, 189, 319, 380, 584, 783, 860, 1115
Mox20I TGGCCA 1 cut(s) 1080
MscI TGGCCA 1 cut(s) 1080
MseI TTAA 7 cut(s) 216, 396, 450, 804, 977, 1005, 1291
MslI CAYNNNNRTG 4 cut(s) 161, 225, 1016, 1040
Msp20I TGGCCA 1 cut(s) 1080
MspR9I CCNGG 3 cut(s) 318, 518, 1091
MvaI CCWGG 3 cut(s) 318, 518, 1091
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 762
NdeI CATATG 1 cut(s) 1258
NdeII GATC 2 cut(s) 85, 942
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 2 cut(s) 533, 918
NspI RCATGY 2 cut(s) 1045, 1072
NspV TTCGAA 2 cut(s) 525, 884
PagI TCATGA 2 cut(s) 220, 576
PciI ACATGT 1 cut(s) 1068
PfeI GAWTC 3 cut(s) 153, 167, 1270
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 1 cut(s) 838
PleI GAGTC 2 cut(s) 449, 1198
PpsI GAGTC 2 cut(s) 449, 1198
PscI ACATGT 1 cut(s) 1068
Psp6I CCWGG 3 cut(s) 316, 516, 1089
PspGI CCWGG 3 cut(s) 316, 516, 1089
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 1 cut(s) 1197
PsrI GAACNNNNNNTAC 2 cut(s) 536, 568
PstI CTGCAG 1 cut(s) 758
RseI CAYNNNNRTG 4 cut(s) 161, 225, 1016, 1040
SaqAI TTAA 7 cut(s) 216, 396, 450, 804, 977, 1005, 1291
SatI GCNGC 1 cut(s) 837
Sau3AI GATC 2 cut(s) 85, 942
Sau96I GGNCC 1 cut(s) 1197
SchI GAGTC 2 cut(s) 450, 1198
ScrFI CCNGG 3 cut(s) 318, 518, 1091
SduI GDGCHC 3 cut(s) 12, 1034, 1241
SfaNI GCATC 1 cut(s) 1191
SfcI CTRYAG 1 cut(s) 754
SfuI TTCGAA 2 cut(s) 525, 884
SmiMI CAYNNNNRTG 4 cut(s) 161, 225, 1016, 1040
SsiI CCGC 2 cut(s) 1208, 1265
SspMI CTAG 4 cut(s) 26, 384, 492, 840
StyD4I CCNGG 3 cut(s) 316, 516, 1089
TaaI ACNGT 6 cut(s) 137, 662, 695, 719, 813, 823
TaqI TCGA 4 cut(s) 43, 525, 872, 884
TfiI GAWTC 3 cut(s) 153, 167, 1270
Tru1I TTAA 7 cut(s) 216, 396, 450, 804, 977, 1005, 1291
Tru9I TTAA 7 cut(s) 216, 396, 450, 804, 977, 1005, 1291
TscAI CASTG 5 cut(s) 142, 168, 542, 667, 700
TseFI GTSAC 2 cut(s) 533, 918
TseI GCWGC 1 cut(s) 836
Tsp45I GTSAC 2 cut(s) 533, 918
TspDTI ATGAA 9 cut(s) 112, 156, 166, 237, 269, 563, 585, 593, 954
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 5 cut(s) 142, 168, 542, 667, 700
VneI GTGCAC 2 cut(s) 1030, 1237
XapI RAATTY 5 cut(s) 143, 307, 354, 485, 784
XceI RCATGY 2 cut(s) 1045, 1072
XmiI GTMKAC 1 cut(s) 1073
XspI CTAG 4 cut(s) 26, 384, 492, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.