Prupe.1G474800_v2.0.a1

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000131
Physical Location & Seq
Reverse (-)
39447904 .. 39450000
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G474800.1

Sequence Viewer

Length: 1002 bp
ATGCAGGAATTGGATAGCTTCTCCTTGTGCCCTTTGCGGTGTATCTACAGAGTTCCTAAGCGACTACGTCAGGGAAACGATGATGAAGCCTACACACCTCAGGTAGTCTCTATAGGCCCACTTCACCATGGAAAGGAACACTTAAATGGTATGGAATATCACAAAAAGAGGTATCTACGAAGTTTTCTACGTAGAACCACGATAACATTGGAGTTTCTTAAGAAGAAACTACGGGACCAAGAAGCAAGACTAAGAAGTTGTTATGCAGAACCGATTGAGTATAGCAGTGAAGACTTTCTAAAAATCATTCTAGTGGATGCCGTCTTCGTTATTGAGTTTTTGTTGAAGTGCAGTGAGGAAAAAATTGGAGATGAGGATGACTACATATTTTATAGGCCATGGATGTGTATCAAGTTCGGACAACAAATCTACAAATTCCCGCTACGTCCTTTTTCTAACTCAACCGCGATAAAATCTGCCATCTGTTCTACATCAGCAGGGGTCAAGTTGAAGGTGGGATTGACGAAAAACTTATTTGATATTCAATTTGATGACAGGACTCTTGAAATTCCAAGACTGGAAATAAGCGATTCTACAGAGGTATTAATTAGAAATCTCATCGCATTTGAACAATGCCACTACAAGGAGAAGCATATAAGTGATTATATCAGTCTCATGGATTCTTTTGTGAACACCCCAAAGGATGTGGAATTGCTTGTTAAGTATGATATCGTTGAAACTTTTCTAGGTGACAACAGGGAGGTTTCTACTTTGATTAATAAGCTTGGAAAAGGGGTTCAAATAAACGTCAATAACTTTCATTTTGCTAGTGTTTGTGAAGACCTGAACAAATACTACAGAACTAGCTGGAACGAATGGAAGGCAACTTTGAGACAAAATTATTTCAACACACCTTGGGCAATTATCTCTTTCCTTGCAGCTGTTTCTTTCCTTATACTCACTTTCATCCAAGCAGTGTGCTCCATTTTATATATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

334

Amino Acids

38.91

Weight (kDa)

7.54

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 467
AciI CCGC 3 cut(s) 37, 440, 465
AcsI RAATTY 2 cut(s) 434, 567
AfiI CCNNNNNNNGG 2 cut(s) 133, 643
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 8 cut(s) 346, 511, 545, 566, 629, 737, 800, 907
AloI GAACNNNNNNTCC 2 cut(s) 780, 812
AluBI AGCT 4 cut(s) 18, 784, 867, 941
AluI AGCT 4 cut(s) 18, 784, 867, 941
Alw21I GWGCWC 1 cut(s) 983
Alw26I GTCTC 3 cut(s) 112, 677, 886
AoxI GGCC 2 cut(s) 115, 395
ApeKI GCWGC 1 cut(s) 938
ApoI RAATTY 2 cut(s) 434, 567
AseI ATTAAT 2 cut(s) 605, 777
Asp700I GAANNNNTTC 2 cut(s) 294, 741
AspS9I GGNCC 2 cut(s) 116, 235
AsuHPI GGTGA 2 cut(s) 116, 761
AvaII GGWCC 1 cut(s) 235
AxyI CCTNAGG 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 32
BbsI GAAGAC 3 cut(s) 297, 316, 846
Bbv12I GWGCWC 1 cut(s) 983
BbvI GCAGC 1 cut(s) 950
BccI CCATC 1 cut(s) 488
BceAI ACGGC 1 cut(s) 305
BcoDI GTCTC 3 cut(s) 112, 677, 886
BfaI CTAG 4 cut(s) 311, 746, 828, 864
BfmI CTRYAG 4 cut(s) 46, 111, 594, 856
BfrI CTTAAG 1 cut(s) 218
BisI GCNGC 1 cut(s) 939
BlsI GCNGC 1 cut(s) 940
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 116, 235
BmiI GGNNCC 1 cut(s) 236
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 3 cut(s) 297, 316, 846
Bpu10I CCTNAGC 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 407
BsaJI CCNNGG 3 cut(s) 127, 398, 914
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 643
Bse1I ACTGG 1 cut(s) 582
Bse21I CCTNAGG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 407
BseDI CCNNGG 3 cut(s) 127, 398, 914
BseGI GGATG 5 cut(s) 322, 382, 408, 709, 966
BseJI GATNNNNATC 1 cut(s) 407
BseLI CCNNNNNNNGG 2 cut(s) 133, 643
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 582
BseSI GKGCMC 1 cut(s) 32
BseXI GCAGC 1 cut(s) 950
BsgI GTGCAG 1 cut(s) 370
Bsh1236I CGCG 1 cut(s) 467
BshFI GGCC 2 cut(s) 117, 397
BsiHKAI GWGCWC 1 cut(s) 983
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 133, 643
BsmAI GTCTC 3 cut(s) 112, 677, 886
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 2 cut(s) 117, 397
Bsp1286I GDGCHC 2 cut(s) 32, 983
Bsp19I CCATGG 2 cut(s) 127, 398
BspACI CCGC 3 cut(s) 37, 440, 465
BspANI GGCC 2 cut(s) 117, 397
BspCNI CTCAG 1 cut(s) 112
BspFNI CGCG 1 cut(s) 467
BspLI GGNNCC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 218
BsrI ACTGG 1 cut(s) 582
BssECI CCNNGG 3 cut(s) 127, 398, 914
BssT1I CCWWGG 3 cut(s) 127, 398, 914
BstAFI CTTAAG 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 191
BstDEI CTNAG 3 cut(s) 57, 99, 251
BstDSI CCRYGG 2 cut(s) 127, 398
BstF5I GGATG 5 cut(s) 322, 382, 408, 709, 966
BstFNI CGCG 1 cut(s) 467
BstMAI GTCTC 3 cut(s) 112, 677, 886
BstSFI CTRYAG 4 cut(s) 46, 111, 594, 856
BstSLI GKGCMC 1 cut(s) 32
BstSNI TACGTA 1 cut(s) 191
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 1 cut(s) 950
BstV2I GAAGAC 3 cut(s) 297, 316, 846
Bsu36I CCTNAGG 1 cut(s) 99
BsuRI GGCC 2 cut(s) 117, 397
BtgI CCRYGG 2 cut(s) 127, 398
BtgZI GCGATG 1 cut(s) 604
BtsCI GGATG 5 cut(s) 322, 382, 408, 709, 966
BtsI GCAGTG 3 cut(s) 292, 358, 981
BtsIMutI CAGTG 3 cut(s) 292, 358, 981
Cfr13I GGNCC 2 cut(s) 116, 235
CspCI CAANNNNNGTGG 2 cut(s) 687, 722
CviAII CATG 3 cut(s) 128, 399, 676
CviJI RGCY 7 cut(s) 18, 89, 117, 397, 784, 867, 941
CviKI_1 RGCY 7 cut(s) 18, 89, 117, 397, 784, 867, 941
DdeI CTNAG 3 cut(s) 57, 99, 251
Eco105I TACGTA 1 cut(s) 191
Eco130I CCWWGG 3 cut(s) 127, 398, 914
Eco32I GATATC 1 cut(s) 730
Eco47I GGWCC 1 cut(s) 235
Eco81I CCTNAGG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 730
EcoT14I CCWWGG 3 cut(s) 127, 398, 914
ErhI CCWWGG 3 cut(s) 127, 398, 914
FaeI CATG 3 cut(s) 131, 402, 679
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 248
FatI CATG 3 cut(s) 127, 398, 675
FauI CCCGC 1 cut(s) 447
Fnu4HI GCNGC 1 cut(s) 939
FokI GGATG 5 cut(s) 329, 389, 415, 716, 953
Fsp4HI GCNGC 1 cut(s) 939
FspBI CTAG 4 cut(s) 311, 746, 828, 864
GluI GCNGC 1 cut(s) 939
HaeIII GGCC 2 cut(s) 117, 397
Hin1II CATG 3 cut(s) 131, 402, 679
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 3 cut(s) 559, 590, 680
HphI GGTGA 2 cut(s) 116, 761
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 1 cut(s) 419
Hpy188III TCNNGA 1 cut(s) 563
Hpy8I GTNNAC 1 cut(s) 691
HpyAV CCTTC 2 cut(s) 505, 874
HpyCH4IV ACGT 4 cut(s) 67, 190, 445, 807
HpyCH4V TGCA 4 cut(s) 4, 266, 351, 938
HpyF3I CTNAG 3 cut(s) 57, 99, 251
HpySE526I ACGT 4 cut(s) 67, 190, 445, 807
Hsp92II CATG 3 cut(s) 131, 402, 679
LmnI GCTCC 1 cut(s) 986
LpnPI CCDG 8 cut(s) 56, 86, 483, 541, 563, 742, 853, 857
Lsp1109I GCAGC 1 cut(s) 950
LweI GCATC 1 cut(s) 307
MaeI CTAG 4 cut(s) 311, 746, 828, 864
MaeII ACGT 4 cut(s) 67, 190, 445, 807
MaeIII GTNAC 1 cut(s) 749
MboII GAAGA 4 cut(s) 235, 302, 316, 851
MhlI GDGCHC 2 cut(s) 32, 983
MluCI AATT 9 cut(s) 8, 363, 434, 545, 567, 606, 710, 898, 921
MlyI GAGTC 1 cut(s) 553
MnlI CCTC 6 cut(s) 108, 162, 349, 367, 592, 754
MroXI GAANNNNTTC 2 cut(s) 294, 741
MseI TTAA 6 cut(s) 143, 219, 605, 720, 777, 1000
MslI CAYNNNNRTG 4 cut(s) 144, 311, 403, 657
MspA1I CMGCKG 1 cut(s) 941
MspCI CTTAAG 1 cut(s) 218
MvnI CGCG 1 cut(s) 467
NcoI CCATGG 2 cut(s) 127, 398
NlaIII CATG 3 cut(s) 131, 402, 679
NlaIV GGNNCC 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 749
PdmI GAANNNNTTC 2 cut(s) 294, 741
PfeI GAWTC 2 cut(s) 590, 680
PflFI GACNNNGTC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 940
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
Ppu21I YACGTR 1 cut(s) 191
PshBI ATTAAT 2 cut(s) 605, 777
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 2 cut(s) 116, 235
PsrI GAACNNNNNNTAC 2 cut(s) 839, 871
PsyI GACNNNGTC 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 941
RseI CAYNNNNRTG 4 cut(s) 144, 311, 403, 657
SaqAI TTAA 6 cut(s) 143, 219, 605, 720, 777, 1000
SatI GCNGC 1 cut(s) 939
Sau96I GGNCC 2 cut(s) 116, 235
SchI GAGTC 1 cut(s) 553
SduI GDGCHC 2 cut(s) 32, 983
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 4 cut(s) 46, 111, 594, 856
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 4 cut(s) 144, 311, 403, 657
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SnaBI TACGTA 1 cut(s) 191
Sse9I AATT 9 cut(s) 8, 363, 434, 545, 567, 606, 710, 898, 921
SsiI CCGC 3 cut(s) 37, 440, 465
SspMI CTAG 4 cut(s) 311, 746, 828, 864
StyI CCWWGG 3 cut(s) 127, 398, 914
TaiI ACGT 4 cut(s) 70, 193, 448, 810
TasI AATT 9 cut(s) 8, 363, 434, 545, 567, 606, 710, 898, 921
TfiI GAWTC 2 cut(s) 590, 680
Tru1I TTAA 6 cut(s) 143, 219, 605, 720, 777, 1000
Tru9I TTAA 6 cut(s) 143, 219, 605, 720, 777, 1000
TscAI CASTG 3 cut(s) 292, 358, 981
TseFI GTSAC 1 cut(s) 749
TseI GCWGC 1 cut(s) 938
Tsp45I GTSAC 1 cut(s) 749
TspDTI ATGAA 3 cut(s) 99, 809, 955
TspRI CASTG 3 cut(s) 292, 358, 981
Tth111I GACNNNGTC 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 235
VspI ATTAAT 2 cut(s) 605, 777
XapI RAATTY 2 cut(s) 434, 567
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XmnI GAANNNNTTC 2 cut(s) 294, 741
XspI CTAG 4 cut(s) 311, 746, 828, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.