RchiOBHm_Chr4g0410021

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000131
Physical Location & Seq
Reverse (-)
33640961 .. 33642321
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38099

Sequence Viewer

Length: 738 bp
ATGCAATCACAACGATACATCAGGAGGGAAATGGAAGGAAGTGTTGAAGCTGGACCACATGACATAGAAAACCCGTACGTTGTATTAGAAAATTCATTGATAGAGGAGGTGGGTAGATTGTCCCCCATATCCAATTCGCGTTGTATATACCGGGTTCCTAATCGACTACGGCATGTATCTGAAGACGTCTACACACCTAGGGTAATCTCTATAGGCCCACTGCATCACGGAAGGGAAGCCTTGAAAGCCATGGAAGAACACAAAAAGAGGTACTTACAATATTTTGATGATGGAATTCTGGAAATTCCAAAATTCGTAGCACATGATGCTACAGAGTTTGTACTAAAAAATCTAGTTGCTTTTGAGCAATGCACTGGCTTAGGAAATTACCTATCTGATTATGTCATTCTTATGGATCAGCTTGTGGACACCTCAAAAGATGCTGAGTTGCTCGTTAAGTATAAAATCATTGTAAACATGCTAGGAGGTGGGAATAATGAGTTGTCAGATATGATTAACCGCCTGTCAAATGGGGTTAGCCAACAAAATGAATTCTATTTTGGTACTCTTCTTGTAGACTTGAACAAGTTCTGCAGTTCAACATGGCACAAAAGGATGGCAAATTTGAGACAAAATTATTTCAACACCCCTTGGGCAACCATTTCATTTTTTGCAGCAGTCCTTCTCCTGATACTGACTATGATTCAAACAATTTGCTCGATAATCTCTCTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

245

Amino Acids

28.07

Weight (kDa)

5.98

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 49 - 95 6.3e-16 Plant protein of unknown function
DUF247 PF03140 95 - 232 4.9e-43 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
AccI GTMKAC 2 cut(s) 189, 576
AccII CGCG 1 cut(s) 139
AciI CCGC 1 cut(s) 520
AclWI GGATC 1 cut(s) 423
AcsI RAATTY 6 cut(s) 91, 294, 303, 311, 551, 622
AcuI CTGAAG 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 4 cut(s) 77, 272, 342, 565
AgsI TTSAA 6 cut(s) 47, 244, 583, 600, 643, 707
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AluBI AGCT 2 cut(s) 50, 421
AluI AGCT 2 cut(s) 50, 421
Alw26I GTCTC 1 cut(s) 622
AlwI GGATC 1 cut(s) 423
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 674
ApoI RAATTY 6 cut(s) 91, 294, 303, 311, 551, 622
Asp700I GAANNNNTTC 1 cut(s) 587
AspA2I CCTAGG 1 cut(s) 197
AspS9I GGNCC 2 cut(s) 53, 215
AsuC2I CCSGG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 53
AvrII CCTAGG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 686
BccI CCATC 2 cut(s) 284, 610
BceAI ACGGC 1 cut(s) 185
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 622
BfaI CTAG 3 cut(s) 198, 353, 482
BfmI CTRYAG 3 cut(s) 210, 330, 592
BisI GCNGC 1 cut(s) 675
BlnI CCTAGG 1 cut(s) 197
BlsI GCNGC 1 cut(s) 676
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 2 cut(s) 53, 215
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 3 cut(s) 232, 316, 430
BpiI GAAGAC 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 379
BpuMI CCSGG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 197, 249, 650
Bse1I ACTGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 374
BseDI CCNNGG 3 cut(s) 197, 249, 650
BseGI GGATG 1 cut(s) 621
BseMI GCAATG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 379
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 686
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 151
BsiWI CGTACG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 622
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 415
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 1 cut(s) 520
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 596
BspPI GGATC 1 cut(s) 423
BsrDI GCAATG 1 cut(s) 374
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 3 cut(s) 197, 249, 650
BssMI GATC 1 cut(s) 415
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 3 cut(s) 197, 249, 650
Bst6I CTCTTC 1 cut(s) 573
BstACI GRCGYC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 326
BstDEI CTNAG 2 cut(s) 379, 444
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 621
BstFNI CGCG 1 cut(s) 139
BstKTI GATC 1 cut(s) 418
BstMAI GTCTC 1 cut(s) 622
BstMBI GATC 1 cut(s) 415
BstMWI GCNNNNNNNGC 2 cut(s) 245, 326
BstNSI RCATGY 2 cut(s) 176, 481
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 3 cut(s) 210, 330, 592
BstUI CGCG 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 686
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 249
BtsCI GGATG 1 cut(s) 621
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 218, 372
Cfr13I GGNCC 2 cut(s) 53, 215
Csp6I GTAC 4 cut(s) 76, 271, 341, 564
CviAII CATG 6 cut(s) 59, 173, 250, 323, 478, 603
CviJI RGCY 7 cut(s) 50, 216, 239, 248, 378, 421, 540
CviKI_1 RGCY 7 cut(s) 50, 216, 239, 248, 378, 421, 540
CviQI GTAC 4 cut(s) 76, 271, 341, 564
DdeI CTNAG 2 cut(s) 379, 444
DpnI GATC 1 cut(s) 417
DpnII GATC 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Eco130I CCWWGG 3 cut(s) 197, 249, 650
Eco47I GGWCC 1 cut(s) 53
Eco57I CTGAAG 1 cut(s) 201
EcoRI GAATTC 2 cut(s) 294, 551
EcoT14I CCWWGG 3 cut(s) 197, 249, 650
ErhI CCWWGG 3 cut(s) 197, 249, 650
FaeI CATG 6 cut(s) 62, 176, 253, 326, 481, 606
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FaqI GGGAC 1 cut(s) 106
FatI CATG 6 cut(s) 58, 172, 249, 322, 477, 602
FblI GTMKAC 2 cut(s) 189, 576
Fnu4HI GCNGC 1 cut(s) 675
FokI GGATG 1 cut(s) 628
Fsp4HI GCNGC 1 cut(s) 675
FspBI CTAG 3 cut(s) 198, 353, 482
GluI GCNGC 1 cut(s) 675
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 6 cut(s) 62, 176, 253, 326, 481, 606
HinfI GANTC 1 cut(s) 703
HpaII CCGG 1 cut(s) 151
Hpy166II GTNNAC 4 cut(s) 190, 427, 475, 577
Hpy188I TCNGA 3 cut(s) 181, 397, 508
Hpy188III TCNNGA 3 cut(s) 22, 299, 688
Hpy8I GTNNAC 4 cut(s) 190, 427, 475, 577
HpyAV CCTTC 3 cut(s) 29, 225, 692
HpyCH4IV ACGT 2 cut(s) 78, 186
HpyCH4V TGCA 5 cut(s) 4, 223, 372, 594, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 326
HpyF3I CTNAG 2 cut(s) 379, 444
HpySE526I ACGT 2 cut(s) 78, 186
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 6 cut(s) 62, 176, 253, 326, 481, 606
Kzo9I GATC 1 cut(s) 415
LpnPI CCDG 7 cut(s) 7, 36, 164, 284, 360, 536, 701
Lsp1109I GCAGC 1 cut(s) 686
LweI GCATC 3 cut(s) 232, 316, 430
MaeI CTAG 3 cut(s) 198, 353, 482
MaeII ACGT 2 cut(s) 78, 186
MalI GATC 1 cut(s) 417
MboI GATC 1 cut(s) 415
MboII GAAGA 3 cut(s) 194, 266, 560
MnlI CCTC 6 cut(s) 18, 97, 100, 261, 442, 479
MroXI GAANNNNTTC 1 cut(s) 587
MseI TTAA 2 cut(s) 456, 516
MslI CAYNNNNRTG 1 cut(s) 410
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 245, 326
NciI CCSGG 1 cut(s) 152
NcoI CCATGG 1 cut(s) 249
NdeII GATC 1 cut(s) 415
NlaIII CATG 6 cut(s) 62, 176, 253, 326, 481, 606
NlaIV GGNNCC 1 cut(s) 156
NspI RCATGY 2 cut(s) 176, 481
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 1 cut(s) 703
Pfl23II CGTACG 1 cut(s) 75
PkrI GCNGC 1 cut(s) 676
PspLI CGTACG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 2 cut(s) 53, 215
PstI CTGCAG 1 cut(s) 596
RsaI GTAC 4 cut(s) 77, 272, 342, 565
RsaNI GTAC 4 cut(s) 76, 271, 341, 564
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 2 cut(s) 456, 516
SatI GCNGC 1 cut(s) 675
Sau3AI GATC 1 cut(s) 415
Sau96I GGNCC 2 cut(s) 53, 215
ScrFI CCNGG 1 cut(s) 152
SfaNI GCATC 3 cut(s) 232, 316, 430
SfcI CTRYAG 3 cut(s) 210, 330, 592
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 410
SsiI CCGC 1 cut(s) 520
SspI AATATT 1 cut(s) 281
SspMI CTAG 3 cut(s) 198, 353, 482
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 3 cut(s) 197, 249, 650
TaiI ACGT 2 cut(s) 81, 189
TaqI TCGA 2 cut(s) 163, 719
TatI WGTACW 1 cut(s) 340
TfiI GAWTC 1 cut(s) 703
Tru1I TTAA 2 cut(s) 456, 516
Tru9I TTAA 2 cut(s) 456, 516
TscAI CASTG 2 cut(s) 225, 379
TseI GCWGC 1 cut(s) 674
TspDTI ATGAA 3 cut(s) 84, 564, 654
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 2 cut(s) 225, 379
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 6 cut(s) 91, 294, 303, 311, 551, 622
XceI RCATGY 2 cut(s) 176, 481
XmaJI CCTAGG 1 cut(s) 197
XmiI GTMKAC 2 cut(s) 189, 576
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 3 cut(s) 198, 353, 482
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.