Rh2BG283800

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000131
Physical Location & Seq
Forward (+)
31138769 .. 31139488
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG283800.1

Sequence Viewer

Length: 720 bp
ATGACCACTATGTTAGAAACTTCATTACAGGCGGAGTTGAATGGTGTCTGTGACCTGACCTCTTTGTGTAGTATCTACAAAGTTCCTGAGCGACTTGCTTGGTGCGCAAGTAAAAAGTGCTACACACCTTTGGTAGTCTCGATAGGCCCGCTTCACCGTCATCGCCATGAACTAAAAGCCATGGAAGAACACAAACTGAGATACCTAAAACATTTTATAGGTCGGACCAATGTTAGCTTGAAGGAGCATCTAATGACTATACAGGGAAAAGAAGAAAGCCTTCGCAATTGTTACGCAGAAGCTATTGGACTTAATAGTGATGAATTTGTAAGAATGATTCTAGTGGATGCAGCTTTTGTAATTGAAATGTTGTTGAAGTATAGTCACTGTAATTTGCGGGATGAGAATCATGATCGGATATTTCATAAACCATGGATGATTCAGGATGTATGGCATGACATGCGGTTGCTTGAGAATCAACTGCCTTTCTGCATCCTTGATCTCCTTTATGACAAAGTTAATGTCAGTGACAAGCTTCCATTAGTTCGTCTTTCTCACAACTTCTTCTTCAAGATTCCAATGCTTATAAATGGAACAAAAGGCATGTTGGAGATAATCCAAGGCAAAATGGTTAGAGAGGGAACTGAAGGCAAGTTGGCGATGCTATCACATACTTCAGAAGTAAAACTTTTGTTGATTTTATTAGAACGTTGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

239

Amino Acids

27.79

Weight (kDa)

7.65

Isoelectric Point (pI)

25.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 25 - 189 5.5e-50 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 587
Acc16I TGCGCA 1 cut(s) 106
AciI CCGC 4 cut(s) 32, 149, 397, 463
AclI AACGTT 1 cut(s) 709
AcsI RAATTY 1 cut(s) 323
AcuI CTGAAG 2 cut(s) 660, 666
AgsI TTSAA 5 cut(s) 40, 241, 365, 376, 571
AluBI AGCT 4 cut(s) 237, 302, 353, 535
AluI AGCT 4 cut(s) 237, 302, 353, 535
Alw26I GTCTC 1 cut(s) 142
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 323
ArsI GACNNNNNNTTYG 2 cut(s) 507, 539
Asp700I GAANNNNTTC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 146, 225
AsuHPI GGTGA 1 cut(s) 146
AvaII GGWCC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 1 cut(s) 341
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 146, 225
BmsI GCATC 4 cut(s) 256, 337, 501, 651
Bpu10I CCTNAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 491
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 3 cut(s) 180, 431, 619
Bse8I GATNNNNATC 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 180, 431, 619
BseGI GGATG 5 cut(s) 352, 406, 441, 451, 492
BseJI GATNNNNATC 1 cut(s) 405
BseMII CTCAG 2 cut(s) 78, 188
BseXI GCAGC 1 cut(s) 362
BshFI GGCC 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 142
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 412, 499
Bsp19I CCATGG 2 cut(s) 180, 431
BspACI CCGC 4 cut(s) 32, 149, 397, 463
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 79, 189
BspHI TCATGA 1 cut(s) 409
BssECI CCNNGG 3 cut(s) 180, 431, 619
BssMI GATC 2 cut(s) 412, 499
BssT1I CCWWGG 3 cut(s) 180, 431, 619
Bst4CI ACNGT 2 cut(s) 158, 389
BstAPI GCANNNNNTGC 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 87, 197
BstDSI CCRYGG 2 cut(s) 180, 431
BstF5I GGATG 5 cut(s) 352, 406, 441, 451, 492
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 2 cut(s) 415, 502
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 2 cut(s) 412, 499
BstMWI GCNNNNNNNGC 2 cut(s) 104, 460
BstNSI RCATGY 2 cut(s) 463, 607
BstV1I GCAGC 1 cut(s) 362
BsuRI GGCC 1 cut(s) 147
BtgI CCRYGG 2 cut(s) 180, 431
BtgZI GCGATG 2 cut(s) 146, 674
BtsCI GGATG 5 cut(s) 352, 406, 441, 451, 492
BtsIMutI CAGTG 2 cut(s) 385, 532
Cac8I GCNNGC 1 cut(s) 149
CciI TCATGA 1 cut(s) 409
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 146, 225
CviAII CATG 7 cut(s) 167, 181, 410, 432, 455, 460, 604
CviJI RGCY 7 cut(s) 147, 179, 237, 279, 302, 353, 535
CviKI_1 RGCY 7 cut(s) 147, 179, 237, 279, 302, 353, 535
DdeI CTNAG 2 cut(s) 87, 197
DpnI GATC 2 cut(s) 414, 501
DpnII GATC 2 cut(s) 412, 499
EciI GGCGGA 1 cut(s) 47
Eco130I CCWWGG 3 cut(s) 180, 431, 619
Eco47I GGWCC 1 cut(s) 225
Eco57I CTGAAG 2 cut(s) 660, 666
EcoT14I CCWWGG 3 cut(s) 180, 431, 619
ErhI CCWWGG 3 cut(s) 180, 431, 619
FaeI CATG 7 cut(s) 170, 184, 413, 435, 458, 463, 607
FalI AAGNNNNNCTT 4 cut(s) 264, 296, 672, 704
FatI CATG 7 cut(s) 166, 180, 409, 431, 454, 459, 603
FauI CCCGC 2 cut(s) 156, 390
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 5 cut(s) 359, 413, 448, 458, 479
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 1 cut(s) 341
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 351
HaeIII GGCC 1 cut(s) 147
HhaI GCGC 1 cut(s) 107
Hin1II CATG 7 cut(s) 170, 184, 413, 435, 458, 463, 607
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 5 cut(s) 337, 406, 439, 475, 574
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 4 cut(s) 225, 417, 679, 719
Hpy188III TCNNGA 5 cut(s) 86, 139, 410, 443, 571
HpyAV CCTTC 3 cut(s) 235, 290, 641
HpyCH4III ACNGT 2 cut(s) 158, 389
HpyCH4IV ACGT 1 cut(s) 709
HpyCH4V TGCA 2 cut(s) 350, 492
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 460
HpyF3I CTNAG 2 cut(s) 87, 197
HpySE526I ACGT 1 cut(s) 709
Hsp92II CATG 7 cut(s) 170, 184, 413, 435, 458, 463, 607
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 2 cut(s) 412, 499
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 5 cut(s) 14, 68, 99, 248, 428
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 4 cut(s) 256, 337, 501, 651
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 709
MaeIII GTNAC 4 cut(s) 50, 290, 383, 527
MalI GATC 2 cut(s) 414, 501
MboI GATC 2 cut(s) 412, 499
MboII GAAGA 4 cut(s) 197, 284, 556, 559
MfeI CAATTG 1 cut(s) 286
MluCI AATT 4 cut(s) 286, 323, 360, 391
MmeI TCCRAC 2 cut(s) 203, 588
MnlI CCTC 2 cut(s) 70, 631
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 2 cut(s) 312, 519
MslI CAYNNNNRTG 1 cut(s) 165
MunI CAATTG 1 cut(s) 286
MwoI GCNNNNNNNGC 2 cut(s) 104, 460
NcoI CCATGG 2 cut(s) 180, 431
NdeII GATC 2 cut(s) 412, 499
NlaIII CATG 7 cut(s) 170, 184, 413, 435, 458, 463, 607
NmuCI GTSAC 3 cut(s) 50, 383, 527
NsbI TGCGCA 1 cut(s) 106
NspI RCATGY 2 cut(s) 463, 607
PagI TCATGA 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 5 cut(s) 337, 406, 439, 475, 574
PkrI GCNGC 1 cut(s) 352
PsiI TTATAA 1 cut(s) 587
Psp1406I AACGTT 1 cut(s) 709
PspPI GGNCC 2 cut(s) 146, 225
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 2 cut(s) 312, 519
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 2 cut(s) 412, 499
Sau96I GGNCC 2 cut(s) 146, 225
SfaNI GCATC 4 cut(s) 256, 337, 501, 651
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 4 cut(s) 286, 323, 360, 391
SsiI CCGC 4 cut(s) 32, 149, 397, 463
SspMI CTAG 1 cut(s) 341
StyI CCWWGG 3 cut(s) 180, 431, 619
TaaI ACNGT 2 cut(s) 158, 389
TaiI ACGT 1 cut(s) 712
TaqI TCGA 1 cut(s) 140
TasI AATT 4 cut(s) 286, 323, 360, 391
TfiI GAWTC 5 cut(s) 337, 406, 439, 475, 574
Tru1I TTAA 2 cut(s) 312, 519
Tru9I TTAA 2 cut(s) 312, 519
TscAI CASTG 2 cut(s) 392, 532
TseFI GTSAC 3 cut(s) 50, 383, 527
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 3 cut(s) 50, 383, 527
TspDTI ATGAA 4 cut(s) 12, 183, 336, 413
TspRI CASTG 2 cut(s) 392, 532
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 1 cut(s) 323
XceI RCATGY 2 cut(s) 463, 607
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.