Rroxscaffold_7G00170720

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000131
Physical Location & Seq
Reverse (-)
11100662 .. 11101395
734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170720.1

Sequence Viewer

Length: 537 bp
ATGTCTGGATTTGCTCAACATAAACAAAGGAGAATGGAAGTAAGCAATCAAGCTACTCCAAATAAAAAAGGAAACCCGTACATTTCGTTAGAAGCTTCAATGGGTGAGGAGCCATATAATGTGTCTCGTGTATCCCCAGTGCGTTGTATCTATCGAGTTCCTTACCGACTGAGACATGTACATGAAAATGCCTATACACCCAAATTAGTTTCTATAGGGGCATTTCATCATGGTCCTATTAGAGTAAGTTCACCGGCAACCTTATGCCCGGCACCACGTCAAAAGGAGGCTTGGGGGCAAGGATTTTCCACTGTTCATTCTTCCACCGGATTTGGGGCAAGACTACGGTGGGAGGCCCGAGACACCATCTCGGGCACCATGGTGACCGAGGTCGTGACCCGGCTGCCACACCGGCCCAAAAAGAGGAGCCGAGGGGAGACGCGCCGGGAGGGTGGAGTGCATGCAAGTCGCTTGTCTTCTAGTAGAGACAAGGCTACAGCGCGTGGGAGTGGGGAAAAGTCAGGTTGTGGCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

178

Amino Acids

19.69

Weight (kDa)

10.76

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 50 - 78 1.2e-07 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 271, 374
AccII CGCG 2 cut(s) 442, 502
AfaI GTAC 2 cut(s) 80, 180
AfiI CCNNNNNNNGG 2 cut(s) 333, 423
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 1 cut(s) 99
AjiI CACGTC 1 cut(s) 278
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 2 cut(s) 53, 95
AluI AGCT 2 cut(s) 53, 95
Alw26I GTCTC 5 cut(s) 129, 166, 354, 431, 480
Ama87I CYCGRG 2 cut(s) 357, 370
AoxI GGCC 3 cut(s) 354, 413, 529
ApeKI GCWGC 1 cut(s) 403
AspLEI GCGC 2 cut(s) 444, 502
AspS9I GGNCC 3 cut(s) 233, 355, 414
AsuC2I CCSGG 3 cut(s) 269, 400, 446
AsuHPI GGTGA 3 cut(s) 116, 243, 394
AvaI CYCGRG 2 cut(s) 357, 370
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 377
BanI GGYRCC 2 cut(s) 271, 374
BauI CACGAG 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 390
BccI CCATC 1 cut(s) 374
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciVI GTATCC 1 cut(s) 142
BcnI CCSGG 3 cut(s) 269, 400, 446
BcoDI GTCTC 5 cut(s) 129, 166, 354, 431, 480
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 3 cut(s) 213, 495, 533
BfuI GTATCC 1 cut(s) 142
BglI GCCNNNNNGGC 1 cut(s) 412
BisI GCNGC 1 cut(s) 404
BlsI GCNGC 1 cut(s) 405
Bme1390I CCNGG 3 cut(s) 269, 400, 446
Bme18I GGWCC 1 cut(s) 233
BmeT110I CYCGRG 2 cut(s) 357, 370
BmgBI CACGTC 1 cut(s) 278
BmgT120I GGNCC 3 cut(s) 233, 355, 414
BmiI GGNNCC 4 cut(s) 111, 273, 376, 428
BmrFI CCNGG 3 cut(s) 269, 400, 446
BmrI ACTGGG 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 131
BoxI GACNNNNGTC 1 cut(s) 389
BpiI GAAGAC 1 cut(s) 468
BpuMI CCSGG 3 cut(s) 269, 400, 446
BsaJI CCNNGG 3 cut(s) 378, 387, 430
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 423
Bse118I RCCGGY 2 cut(s) 253, 411
Bse1I ACTGG 1 cut(s) 137
BseDI CCNNGG 3 cut(s) 378, 387, 430
BseLI CCNNNNNNNGG 2 cut(s) 333, 423
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 2 cut(s) 122, 439
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 1 cut(s) 390
Bsh1236I CGCG 2 cut(s) 442, 502
BshFI GGCC 3 cut(s) 356, 415, 531
BshNI GGYRCC 2 cut(s) 271, 374
BsiHKCI CYCGRG 2 cut(s) 357, 370
BsiSI CCGG 6 cut(s) 254, 269, 327, 400, 412, 445
BslI CCNNNNNNNGG 2 cut(s) 333, 423
BsmAI GTCTC 5 cut(s) 129, 166, 354, 431, 480
BsmBI CGTCTC 1 cut(s) 431
BsnI GGCC 3 cut(s) 356, 415, 531
BsoBI CYCGRG 2 cut(s) 357, 370
Bsp1286I GDGCHC 1 cut(s) 377
Bsp1407I TGTACA 1 cut(s) 178
Bsp19I CCATGG 1 cut(s) 378
BspANI GGCC 3 cut(s) 356, 415, 531
BspCNI CTCAG 1 cut(s) 162
BspFNI CGCG 2 cut(s) 442, 502
BspLI GGNNCC 4 cut(s) 111, 273, 376, 428
BspT107I GGYRCC 2 cut(s) 271, 374
BsrFI RCCGGY 2 cut(s) 253, 411
BsrGI TGTACA 1 cut(s) 178
BsrI ACTGG 1 cut(s) 137
BssAI RCCGGY 2 cut(s) 253, 411
BssECI CCNNGG 3 cut(s) 378, 387, 430
BssSI CACGAG 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 313, 348
BstAUI TGTACA 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 170
BstDSI CCRYGG 1 cut(s) 378
BstEII GGTNACC 1 cut(s) 382
BstFNI CGCG 2 cut(s) 442, 502
BstHHI GCGC 2 cut(s) 444, 502
BstMAI GTCTC 5 cut(s) 129, 166, 354, 431, 480
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstNSI RCATGY 2 cut(s) 179, 464
BstPAI GACNNNNGTC 1 cut(s) 389
BstPI GGTNACC 1 cut(s) 382
BstSCI CCNGG 3 cut(s) 267, 398, 444
BstSFI CTRYAG 3 cut(s) 213, 495, 533
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 2 cut(s) 442, 502
BstV1I GCAGC 1 cut(s) 390
BstV2I GAAGAC 1 cut(s) 468
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 3 cut(s) 356, 415, 531
BtgI CCRYGG 1 cut(s) 378
BtrI CACGTC 1 cut(s) 278
BtsIMutI CAGTG 2 cut(s) 144, 309
Cac8I GCNNGC 1 cut(s) 462
CfoI GCGC 2 cut(s) 444, 502
Cfr10I RCCGGY 2 cut(s) 253, 411
Cfr13I GGNCC 3 cut(s) 233, 355, 414
CseI GACGC 1 cut(s) 448
Csp6I GTAC 2 cut(s) 79, 179
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 5 cut(s) 176, 182, 230, 379, 461
CviQI GTAC 2 cut(s) 79, 179
DdeI CTNAG 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 233
Eco88I CYCGRG 2 cut(s) 357, 370
Eco91I GGTNACC 1 cut(s) 382
EcoO65I GGTNACC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 5 cut(s) 179, 185, 233, 382, 464
FatI CATG 5 cut(s) 175, 181, 229, 378, 460
Fnu4HI GCNGC 1 cut(s) 404
Fsp4HI GCNGC 1 cut(s) 404
FspBI CTAG 1 cut(s) 480
GlaI GCGC 2 cut(s) 443, 501
GluI GCNGC 1 cut(s) 404
HaeIII GGCC 3 cut(s) 356, 415, 531
HapII CCGG 6 cut(s) 254, 269, 327, 400, 412, 445
HgaI GACGC 1 cut(s) 448
HhaI GCGC 2 cut(s) 444, 502
Hin1II CATG 5 cut(s) 179, 185, 233, 382, 464
Hin6I GCGC 2 cut(s) 442, 500
HinP1I GCGC 2 cut(s) 442, 500
HindIII AAGCTT 1 cut(s) 93
HpaII CCGG 6 cut(s) 254, 269, 327, 400, 412, 445
HphI GGTGA 3 cut(s) 116, 243, 394
Hpy166II GTNNAC 1 cut(s) 251
Hpy188III TCNNGA 2 cut(s) 6, 394
Hpy8I GTNNAC 1 cut(s) 251
HpyCH4III ACNGT 2 cut(s) 313, 348
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 460, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 5 cut(s) 179, 185, 233, 382, 464
HspAI GCGC 2 cut(s) 442, 500
LmnI GCTCC 2 cut(s) 109, 426
LpnPI CCDG 8 cut(s) 150, 267, 282, 340, 413, 425, 458, 507
Lsp1109I GCAGC 1 cut(s) 390
MaeI CTAG 1 cut(s) 480
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 2 cut(s) 382, 394
MboII GAAGA 2 cut(s) 312, 468
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 1 cut(s) 203
MnlI CCTC 7 cut(s) 100, 280, 346, 382, 417, 425, 442
MslI CAYNNNNRTG 3 cut(s) 180, 186, 380
MspI CCGG 6 cut(s) 254, 269, 327, 400, 412, 445
MspR9I CCNGG 3 cut(s) 269, 400, 446
MvnI CGCG 2 cut(s) 442, 502
MwoI GCNNNNNNNGC 1 cut(s) 412
NciI CCSGG 3 cut(s) 269, 400, 446
NcoI CCATGG 1 cut(s) 378
NlaIII CATG 5 cut(s) 179, 185, 233, 382, 464
NlaIV GGNNCC 4 cut(s) 111, 273, 376, 428
NmeAIII GCCGAG 1 cut(s) 455
NmuCI GTSAC 2 cut(s) 382, 394
NspI RCATGY 2 cut(s) 179, 464
OliI CACNNNNGTG 1 cut(s) 380
PaeI GCATGC 1 cut(s) 464
PciI ACATGT 1 cut(s) 175
PkrI GCNGC 1 cut(s) 405
PscI ACATGT 1 cut(s) 175
PshAI GACNNNNGTC 1 cut(s) 389
PspEI GGTNACC 1 cut(s) 382
PspN4I GGNNCC 4 cut(s) 111, 273, 376, 428
PspPI GGNCC 3 cut(s) 233, 355, 414
RsaI GTAC 2 cut(s) 80, 180
RsaNI GTAC 2 cut(s) 79, 179
RseI CAYNNNNRTG 3 cut(s) 180, 186, 380
SatI GCNGC 1 cut(s) 404
Sau96I GGNCC 3 cut(s) 233, 355, 414
ScrFI CCNGG 3 cut(s) 269, 400, 446
SduI GDGCHC 1 cut(s) 377
SetI ASST 6 cut(s) 55, 97, 263, 280, 393, 526
SfcI CTRYAG 3 cut(s) 213, 495, 533
SinI GGWCC 1 cut(s) 233
SmiMI CAYNNNNRTG 3 cut(s) 180, 186, 380
SphI GCATGC 1 cut(s) 464
Sse9I AATT 1 cut(s) 203
SspMI CTAG 1 cut(s) 480
StyD4I CCNGG 3 cut(s) 267, 398, 444
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 313, 348
TaiI ACGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 154
TaqII GACCGA 1 cut(s) 401
TasI AATT 1 cut(s) 203
TatI WGTACW 1 cut(s) 178
TscAI CASTG 2 cut(s) 144, 316
TseFI GTSAC 2 cut(s) 382, 394
TseI GCWGC 1 cut(s) 403
Tsp45I GTSAC 2 cut(s) 382, 394
TspDTI ATGAA 3 cut(s) 198, 215, 305
TspRI CASTG 2 cut(s) 144, 316
VpaK11BI GGWCC 1 cut(s) 233
XceI RCATGY 2 cut(s) 179, 464
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.