Rroxscaffold_3G00234420

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000131
Physical Location & Seq
Reverse (-)
20800205 .. 20810630
10426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234420.1

Sequence Viewer

Length: 261 bp
ATGATGGAGGAGTTGCAGTTGGATAGCTTGTTTCCCCTGTCCCCTTCGCGCTGTATCTACAAGGTTCCTGATCGACTCCGGAGTGTACGCGAAGAGGCCTACACACCTCGTGTTATCTCTATAGGCTCACCTCATCATGGAAACGAAGCCTTCAAAGCCATGAAAGAACACAAAAAGAGGTTGGGAGGCGGCAGCAATGAATTGTCTACCATGATTAACCGCCTTTGTGAAGACTGGAACAAGCGTTGCAGTTTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

86

Amino Acids

9.9

Weight (kDa)

8.93

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 19 - 60 1.2e-11 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 206
AccII CGCG 2 cut(s) 49, 90
AccIII TCCGGA 1 cut(s) 78
AciI CCGC 2 cut(s) 189, 220
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 154, 256
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
Aor13HI TCCGGA 1 cut(s) 78
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 120
BauI CACGAG 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 2 cut(s) 190, 193
BlsI GCNGC 2 cut(s) 191, 194
BmiI GGNNCC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 202
BseAI TCCGGA 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 204
Bsh1236I CGCG 2 cut(s) 49, 90
BshFI GGCC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 98
Bsp13I TCCGGA 1 cut(s) 78
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 2 cut(s) 189, 220
BspANI GGCC 1 cut(s) 98
BspEI TCCGGA 1 cut(s) 78
BspFNI CGCG 2 cut(s) 49, 90
BspLI GGNNCC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 202
BsrI ACTGG 1 cut(s) 239
BssMI GATC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 87
BstFNI CGCG 2 cut(s) 49, 90
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 120
BstUI CGCG 2 cut(s) 49, 90
BstV1I GCAGC 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 237
BsuRI GGCC 1 cut(s) 98
CfoI GCGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 86
CviAII CATG 3 cut(s) 137, 160, 211
CviJI RGCY 5 cut(s) 27, 98, 126, 149, 158
CviKI_1 RGCY 5 cut(s) 27, 98, 126, 149, 158
CviQI GTAC 1 cut(s) 86
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DraIII CACNNNGTG 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco147I AGGCCT 1 cut(s) 98
FaeI CATG 3 cut(s) 140, 163, 214
FaiI YATR 4 cut(s) 122, 138, 161, 212
FaqI GGGAC 1 cut(s) 25
FatI CATG 3 cut(s) 136, 159, 210
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 2 cut(s) 190, 193
Fsp4HI GCNGC 2 cut(s) 190, 193
GlaI GCGC 1 cut(s) 50
GluI GCNGC 2 cut(s) 190, 193
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 79
HhaI GCGC 1 cut(s) 51
Hin1II CATG 3 cut(s) 140, 163, 214
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 1 cut(s) 75
HpaII CCGG 1 cut(s) 79
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 2 cut(s) 86, 207
Hpy188III TCNNGA 2 cut(s) 68, 79
Hpy8I GTNNAC 2 cut(s) 86, 207
HpyAV CCTTC 2 cut(s) 54, 160
HpyCH4V TGCA 2 cut(s) 16, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
Hsp92II CATG 3 cut(s) 140, 163, 214
HspAI GCGC 1 cut(s) 49
Kpn2I TCCGGA 1 cut(s) 78
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 4 cut(s) 50, 81, 92, 220
Lsp1109I GCAGC 1 cut(s) 204
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 104, 242
MluCI AATT 2 cut(s) 200, 256
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 5 cut(s) 88, 117, 141, 171, 179
MroI TCCGGA 1 cut(s) 78
MseI TTAA 1 cut(s) 216
MspI CCGG 1 cut(s) 79
MvnI CGCG 2 cut(s) 49, 90
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 70
NlaIII CATG 3 cut(s) 140, 163, 214
NlaIV GGNNCC 1 cut(s) 66
PceI AGGCCT 1 cut(s) 98
PkrI GCNGC 2 cut(s) 191, 194
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 66
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 2 cut(s) 190, 193
Sau3AI GATC 1 cut(s) 70
SchI GAGTC 1 cut(s) 69
SetI ASST 5 cut(s) 29, 66, 109, 133, 182
SfcI CTRYAG 1 cut(s) 120
Sse9I AATT 2 cut(s) 200, 256
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 2 cut(s) 189, 220
StuI AGGCCT 1 cut(s) 98
TaqI TCGA 1 cut(s) 73
TasI AATT 2 cut(s) 200, 256
TauI GCSGC 1 cut(s) 192
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseI GCWGC 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 176, 213
XmiI GTMKAC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.