Rmu_sc0009318.1_g000002

Plant protein of unknown function

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009318.1
Physical Location & Seq
Forward (+)
16613 .. 17080
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009318.1_g000002.1.cds

Sequence Viewer

Length: 468 bp
atgatcactacttcaacgattatgtgggtcctgcaaattccacacttgagaattcacgggtcaacagaaattttctttcggaatctcattgcctacgagcagtgtgagctccatgatcactacttcaacgattatgtgttcatcattgaccgcctggttgacagttccaaggatgtggacttgcttgttaagagtggaatccttgaatctaagctaccagatagtgaagcagcggcaagttatatcaactcccttgacttggggcctattctgttcagtagaaacttctattttactgatctctgtgaggatctgaatgcatactatagagtcccctggcacaagtggaaggcaagcttgaaacaggactattttagtactccatgggctggactgtctattgttgtagcagctattctcgttgtgctcacttttattcaaacagtttgctctataatgtctttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.86

Weight (kDa)

5.18

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 389
AciI CCGC 2 cut(s) 151, 233
AclWI GGATC 1 cut(s) 318
AcsI RAATTY 3 cut(s) 36, 51, 69
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 2 cut(s) 259, 389
AgsI TTSAA 5 cut(s) 15, 127, 206, 361, 440
AjnI CCWGG 2 cut(s) 153, 335
AluBI AGCT 4 cut(s) 109, 214, 357, 413
AluI AGCT 4 cut(s) 109, 214, 357, 413
Alw21I GWGCWC 2 cut(s) 111, 429
AlwI GGATC 1 cut(s) 318
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 2 cut(s) 230, 410
ApoI RAATTY 3 cut(s) 36, 51, 69
AspS9I GGNCC 2 cut(s) 28, 263
AvaII GGWCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 2 cut(s) 111, 429
BbvI GCAGC 2 cut(s) 242, 422
BciT130I CCWGG 2 cut(s) 155, 337
BclI TGATCA 2 cut(s) 3, 115
BfmI CTRYAG 1 cut(s) 325
BisI GCNGC 3 cut(s) 231, 234, 411
BlsI GCNGC 3 cut(s) 232, 235, 412
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 2 cut(s) 155, 337
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 2 cut(s) 28, 263
BmiI GGNNCC 2 cut(s) 29, 264
BmrFI CCNGG 2 cut(s) 155, 337
BpuEI CTTGAG 1 cut(s) 67
BsaJI CCNNGG 3 cut(s) 168, 335, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 389
Bse3DI GCAATG 1 cut(s) 87
BseBI CCWGG 2 cut(s) 155, 337
BseDI CCNNGG 3 cut(s) 168, 335, 383
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 2 cut(s) 259, 389
BseMI GCAATG 1 cut(s) 87
BseXI GCAGC 2 cut(s) 242, 422
BshFI GGCC 1 cut(s) 265
BsiHKAI GWGCWC 2 cut(s) 111, 429
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 2 cut(s) 259, 389
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 322
BsnI GGCC 1 cut(s) 265
Bsp1286I GDGCHC 2 cut(s) 111, 429
Bsp143I GATC 4 cut(s) 3, 115, 298, 310
Bsp19I CCATGG 1 cut(s) 383
BspACI CCGC 2 cut(s) 151, 233
BspANI GGCC 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 29, 264
BspPI GGATC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 87
BssECI CCNNGG 3 cut(s) 168, 335, 383
BssMI GATC 4 cut(s) 3, 115, 298, 310
BssT1I CCWWGG 2 cut(s) 168, 383
Bst2UI CCWGG 2 cut(s) 155, 337
Bst4CI ACNGT 3 cut(s) 164, 396, 445
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 178
BstKTI GATC 4 cut(s) 6, 118, 301, 313
BstMBI GATC 4 cut(s) 3, 115, 298, 310
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 2 cut(s) 155, 337
BstSCI CCNGG 2 cut(s) 153, 335
BstSFI CTRYAG 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 242, 422
BstX2I RGATCY 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 175
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 1 cut(s) 265
BtgI CCRYGG 1 cut(s) 383
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 28, 263
Csp6I GTAC 1 cut(s) 378
CviAII CATG 2 cut(s) 113, 384
CviJI RGCY 6 cut(s) 109, 214, 265, 357, 389, 413
CviKI_1 RGCY 6 cut(s) 109, 214, 265, 357, 389, 413
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 1 cut(s) 210
DpnI GATC 4 cut(s) 5, 117, 300, 312
DpnII GATC 4 cut(s) 3, 115, 298, 310
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 168, 383
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 2 cut(s) 28, 263
EcoRI GAATTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 153, 335
EcoT14I CCWWGG 2 cut(s) 168, 383
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 2 cut(s) 168, 383
FaeI CATG 2 cut(s) 116, 387
FaiI YATR 8 cut(s) 23, 114, 135, 243, 322, 327, 385, 455
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 112, 383
FbaI TGATCA 2 cut(s) 3, 115
Fnu4HI GCNGC 3 cut(s) 231, 234, 411
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 3 cut(s) 231, 234, 411
GluI GCNGC 3 cut(s) 231, 234, 411
HaeIII GGCC 1 cut(s) 265
Hin1II CATG 2 cut(s) 116, 387
HincII GTYRAC 2 cut(s) 63, 160
HindII GTYRAC 2 cut(s) 63, 160
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 4 cut(s) 82, 198, 206, 330
Hpy166II GTNNAC 3 cut(s) 63, 160, 178
Hpy188I TCNGA 2 cut(s) 81, 315
Hpy8I GTNNAC 3 cut(s) 63, 160, 178
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 3 cut(s) 164, 396, 445
HpyCH4V TGCA 2 cut(s) 34, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 2 cut(s) 116, 387
Ksp22I TGATCA 2 cut(s) 3, 115
Kzo9I GATC 4 cut(s) 3, 115, 298, 310
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 8 cut(s) 44, 140, 167, 231, 322, 349, 350, 375
Lsp1109I GCAGC 2 cut(s) 242, 422
MalI GATC 4 cut(s) 5, 117, 300, 312
MboI GATC 4 cut(s) 3, 115, 298, 310
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 2 cut(s) 111, 429
MluCI AATT 3 cut(s) 36, 51, 69
MlyI GAGTC 1 cut(s) 339
MnlI CCTC 1 cut(s) 301
Mph1103I ATGCAT 1 cut(s) 322
MseI TTAA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 233
MspR9I CCNGG 2 cut(s) 155, 337
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 2 cut(s) 155, 337
MwoI GCNNNNNNNGC 1 cut(s) 106
NcoI CCATGG 1 cut(s) 383
NdeII GATC 4 cut(s) 3, 115, 298, 310
NlaIII CATG 2 cut(s) 116, 387
NlaIV GGNNCC 2 cut(s) 29, 264
NsiI ATGCAT 1 cut(s) 322
PctI GAATGC 1 cut(s) 322
PfeI GAWTC 3 cut(s) 82, 198, 206
PflMI CCANNNNNTGG 1 cut(s) 389
PkrI GCNGC 3 cut(s) 232, 235, 412
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PpuMI RGGWCCY 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 28
Psp6I CCWGG 2 cut(s) 153, 335
PspGI CCWGG 2 cut(s) 153, 335
PspN4I GGNNCC 2 cut(s) 29, 264
PspPI GGNCC 2 cut(s) 28, 263
PspPPI RGGWCCY 1 cut(s) 28
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 3 cut(s) 231, 234, 411
Sau3AI GATC 4 cut(s) 3, 115, 298, 310
Sau96I GGNCC 2 cut(s) 28, 263
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 2 cut(s) 155, 337
SduI GDGCHC 2 cut(s) 111, 429
SetI ASST 4 cut(s) 111, 216, 359, 415
SfcI CTRYAG 1 cut(s) 325
SinI GGWCC 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 3 cut(s) 36, 51, 69
SsiI CCGC 2 cut(s) 151, 233
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 153, 335
StyI CCWWGG 2 cut(s) 168, 383
TaaI ACNGT 3 cut(s) 164, 396, 445
TasI AATT 3 cut(s) 36, 51, 69
TatI WGTACW 1 cut(s) 377
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 3 cut(s) 82, 198, 206
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 107
TseI GCWGC 2 cut(s) 230, 410
TspDTI ATGAA 1 cut(s) 130
TspRI CASTG 1 cut(s) 107
Van91I CCANNNNNTGG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 3 cut(s) 36, 51, 69
ZrmI AGTACT 1 cut(s) 379
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.