Rroxscaffold_7G00185800

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000131
Physical Location & Seq
Forward (+)
25240863 .. 25248887
8025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185800.1

Sequence Viewer

Length: 1119 bp
ATGGAAGAACCAGATGAAAAACAAACAAAAAAAAGAGCAACGGAAGAACACAAGAAGAGGTATCTCCAACATTTTCTAAATCGGACCCCGGAAATTAGCTTGGAGAAATTTCTAAAGAAAATAAAAGGCCAAGAAGCAAAAATACGGAGTTGTTATGCAGAACCCATTAAGATTAACAGTGATGATTTCGTAAAACTCATTCTAATTGATGCTACATTCATCCTTGAGCTCTTATTGAGGTCGTATTTTAGCGAATACGGACAGGAAGGAGACCGTATATTTAATATACCATTGATGATATACGATATATGGCCCGACATATTGTTGCTTGAAAATCAGCTGCCATTCTTCATTTTTGAGGAGCTGTTGGATTTGCACAACACTGAAGCAGAAGAACCAGTTTCAATAGGTACTCTTTCTCTCAATTTCTTTCGTGGGCTATTGAATGTTGAAAAAGCTAAGAAGCACATATTGGAGACAGTAGGTTCTTCTCTTGCACAAGCGGATCATTTTGTTGATTTTATAATGAGACAACTATGTCTCCCATTCAAAACCCGAGTTGCAGGGGAATTCAACGGTACTAGGAGTATCACAAATCTGCATCAAGCGGGAGTCAAGTTTCAGGTTGTACCAAACAAAACACATTTATTTGGTCTTGACATACAATACACTGATGGGGTTCTAAAAATTCCGATGATCACAATACAAGACAGTACTGAGGTTATAATCAGAAACCTCGTTGCCTTTGAACAATGTTATGCTATTGACAATCACATAACCGATTATGTCATTATGATGGATCGTTTAGTGAACACCCCAGAAGATGTGGACTTGCTTGTTGAGAGTGGCATCATTCAAAATATGTTGGGTGACAGCGCAGCAGTATCAACTCTGATCAATGCTCTTGCCAACGGGGTCAGTGTTGATCCCTCTAAATTCTTTTATGCTGCTGTCTGTGATGACCTGAACAAGCACTACGGTAAATCTTGTAACAAATGGAAGGCAAATCTGAGACAAAATTATTTCAATACACCTTGGGCTATTATTTCTCTCAGTGCAGCTACTTTCCTCATCATACTCACTATCATACAAACAGTGTGCTCTATCATCGCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

372

Amino Acids

42.43

Weight (kDa)

5.45

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 10 - 360 2e-97 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 524, 725
AasI GACNNNNNNGTC 1 cut(s) 537
AciI CCGC 2 cut(s) 503, 608
AclWI GGATC 3 cut(s) 513, 807, 920
AcsI RAATTY 4 cut(s) 107, 569, 687, 935
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 4 cut(s) 412, 580, 630, 715
AgsI TTSAA 9 cut(s) 332, 405, 445, 452, 550, 574, 749, 857, 1027
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AluBI AGCT 6 cut(s) 99, 229, 340, 364, 458, 1061
AluI AGCT 6 cut(s) 99, 229, 340, 364, 458, 1061
Alw21I GWGCWC 2 cut(s) 231, 1103
Alw26I GTCTC 5 cut(s) 264, 470, 523, 545, 1006
AlwI GGATC 3 cut(s) 513, 807, 920
Ama87I CYCGRG 1 cut(s) 555
AoxI GGCC 2 cut(s) 127, 311
ApeKI GCWGC 4 cut(s) 340, 878, 947, 1058
ApoI RAATTY 4 cut(s) 107, 569, 687, 935
AspLEI GCGC 1 cut(s) 878
AspS9I GGNCC 2 cut(s) 84, 312
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 881
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 231
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
Bbv12I GWGCWC 2 cut(s) 231, 1103
BbvI GCAGC 4 cut(s) 327, 890, 934, 1070
BccI CCATC 2 cut(s) 668, 790
BclI TGATCA 2 cut(s) 696, 894
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 5 cut(s) 264, 470, 523, 545, 1006
BfaI CTAG 1 cut(s) 582
BisI GCNGC 4 cut(s) 341, 879, 948, 1059
BlsI GCNGC 4 cut(s) 342, 880, 949, 1060
BmcAI AGTACT 1 cut(s) 715
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 555
BmgT120I GGNCC 2 cut(s) 84, 312
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 3 cut(s) 199, 610, 858
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 87, 1034
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bse1I ACTGG 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 87, 1034
BseGI GGATG 1 cut(s) 219
BseMII CTCAG 3 cut(s) 708, 1001, 1066
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 4 cut(s) 327, 890, 934, 1070
BsgI GTGCAG 1 cut(s) 1077
BshFI GGCC 2 cut(s) 129, 313
BsiHKAI GWGCWC 2 cut(s) 231, 1103
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 1 cut(s) 89
BsmAI GTCTC 5 cut(s) 264, 470, 523, 545, 1006
BsnI GGCC 2 cut(s) 129, 313
Bso31I GGTCTC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 555
Bsp1286I GDGCHC 2 cut(s) 231, 1103
Bsp143I GATC 5 cut(s) 505, 696, 799, 894, 925
BspACI CCGC 2 cut(s) 503, 608
BspANI GGCC 2 cut(s) 129, 313
BspCNI CTCAG 3 cut(s) 709, 1002, 1065
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 3 cut(s) 513, 807, 920
BspTNI GGTCTC 1 cut(s) 264
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 87, 1034
BssMI GATC 5 cut(s) 505, 696, 799, 894, 925
BssT1I CCWWGG 1 cut(s) 1034
Bst4CI ACNGT 7 cut(s) 179, 275, 481, 578, 713, 980, 1096
Bst6I CTCTTC 1 cut(s) 50
BstDEI CTNAG 4 cut(s) 459, 717, 1010, 1052
BstF5I GGATG 1 cut(s) 219
BstHHI GCGC 1 cut(s) 878
BstKTI GATC 5 cut(s) 508, 699, 802, 897, 928
BstMAI GTCTC 5 cut(s) 264, 470, 523, 545, 1006
BstMBI GATC 5 cut(s) 505, 696, 799, 894, 925
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 4 cut(s) 327, 890, 934, 1070
BsuRI GGCC 2 cut(s) 129, 313
BtgZI GCGATG 1 cut(s) 1093
BtsCI GGATG 1 cut(s) 219
BtsIMutI CAGTG 6 cut(s) 184, 381, 669, 925, 1060, 1101
CfoI GCGC 1 cut(s) 878
Cfr13I GGNCC 2 cut(s) 84, 312
Csp6I GTAC 4 cut(s) 411, 579, 629, 714
CviQI GTAC 4 cut(s) 411, 579, 629, 714
DdeI CTNAG 4 cut(s) 459, 717, 1010, 1052
DpnI GATC 5 cut(s) 507, 698, 801, 896, 927
DpnII GATC 5 cut(s) 505, 696, 799, 894, 925
DrdI GACNNNNNNGTC 1 cut(s) 537
DseDI GACNNNNNNGTC 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 1034
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 405
Eco88I CYCGRG 1 cut(s) 555
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 1034
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 1034
FauI CCCGC 1 cut(s) 601
FbaI TGATCA 2 cut(s) 696, 894
Fnu4HI GCNGC 4 cut(s) 341, 879, 948, 1059
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 4 cut(s) 341, 879, 948, 1059
FspBI CTAG 1 cut(s) 582
GlaI GCGC 1 cut(s) 877
GluI GCNGC 4 cut(s) 341, 879, 948, 1059
HaeIII GGCC 2 cut(s) 129, 313
HapII CCGG 1 cut(s) 89
HhaI GCGC 1 cut(s) 878
Hin6I GCGC 1 cut(s) 876
HinP1I GCGC 1 cut(s) 876
HinfI GANTC 1 cut(s) 612
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 881
Hpy166II GTNNAC 2 cut(s) 811, 829
Hpy188I TCNGA 6 cut(s) 84, 693, 731, 894, 1011, 1118
Hpy188III TCNNGA 1 cut(s) 656
Hpy8I GTNNAC 2 cut(s) 811, 829
HpyAV CCTTC 2 cut(s) 260, 994
HpyCH4III ACNGT 7 cut(s) 179, 275, 481, 578, 713, 980, 1096
HpyCH4V TGCA 6 cut(s) 158, 376, 497, 563, 601, 1058
HpyF3I CTNAG 4 cut(s) 459, 717, 1010, 1052
HspAI GCGC 1 cut(s) 876
Ksp22I TGATCA 2 cut(s) 696, 894
Kzo9I GATC 5 cut(s) 505, 696, 799, 894, 925
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 8 cut(s) 24, 102, 248, 411, 549, 608, 831, 977
Lsp1109I GCAGC 4 cut(s) 327, 890, 934, 1070
LweI GCATC 3 cut(s) 199, 610, 858
MaeI CTAG 1 cut(s) 582
MaeIII GTNAC 2 cut(s) 869, 989
MalI GATC 5 cut(s) 507, 698, 801, 896, 927
MboI GATC 5 cut(s) 505, 696, 799, 894, 925
MboII GAAGA 7 cut(s) 17, 56, 67, 340, 404, 480, 833
MhlI GDGCHC 2 cut(s) 231, 1103
MluCI AATT 8 cut(s) 93, 107, 204, 424, 569, 687, 935, 1018
MlyI GAGTC 1 cut(s) 621
MmeI TCCRAC 2 cut(s) 91, 348
MnlI CCTC 7 cut(s) 51, 231, 352, 712, 746, 940, 1079
MseI TTAA 3 cut(s) 168, 174, 282
MslI CAYNNNNRTG 1 cut(s) 794
MspA1I CMGCKG 1 cut(s) 340
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 89
NciI CCSGG 1 cut(s) 89
NdeII GATC 5 cut(s) 505, 696, 799, 894, 925
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 869
PkrI GCNGC 4 cut(s) 342, 880, 949, 1060
PleI GAGTC 1 cut(s) 620
PpsI GAGTC 1 cut(s) 620
PsiI TTATAA 2 cut(s) 524, 725
Psp124BI GAGCTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 2 cut(s) 84, 312
PsrI GAACNNNNNNTAC 2 cut(s) 959, 991
PvuII CAGCTG 1 cut(s) 340
RsaI GTAC 4 cut(s) 412, 580, 630, 715
RsaNI GTAC 4 cut(s) 411, 579, 629, 714
RseI CAYNNNNRTG 1 cut(s) 794
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 168, 174, 282
SatI GCNGC 4 cut(s) 341, 879, 948, 1059
Sau3AI GATC 5 cut(s) 505, 696, 799, 894, 925
Sau96I GGNCC 2 cut(s) 84, 312
ScaI AGTACT 1 cut(s) 715
SchI GAGTC 1 cut(s) 621
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 2 cut(s) 231, 1103
SfaNI GCATC 3 cut(s) 199, 610, 858
SinI GGWCC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 794
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 8 cut(s) 93, 107, 204, 424, 569, 687, 935, 1018
SsiI CCGC 2 cut(s) 503, 608
SspMI CTAG 1 cut(s) 582
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 1 cut(s) 1034
TaaI ACNGT 7 cut(s) 179, 275, 481, 578, 713, 980, 1096
TasI AATT 8 cut(s) 93, 107, 204, 424, 569, 687, 935, 1018
TatI WGTACW 1 cut(s) 713
Tru1I TTAA 3 cut(s) 168, 174, 282
Tru9I TTAA 3 cut(s) 168, 174, 282
TscAI CASTG 6 cut(s) 184, 388, 676, 925, 1060, 1101
TseFI GTSAC 1 cut(s) 869
TseI GCWGC 4 cut(s) 340, 878, 947, 1058
Tsp45I GTSAC 1 cut(s) 869
TspDTI ATGAA 3 cut(s) 30, 208, 340
TspGWI ACGGA 3 cut(s) 56, 160, 273
TspRI CASTG 6 cut(s) 184, 388, 676, 925, 1060, 1101
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 4 cut(s) 107, 569, 687, 935
XspI CTAG 1 cut(s) 582
ZrmI AGTACT 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.