RchiOBHm_Chr6g0252341

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000131
Physical Location & Seq
Forward (+)
7518206 .. 7519162
957 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22625

Sequence Viewer

Length: 957 bp
ATGGAAGATCACAAAAAGTGGTACCTTAAATGTTTCATGGGCCGAACCAGTTCAAAGCTGAATGATTGTGCAAGAAAAATAGAAGACCAAGAAAAGAAATTGCGGAGTTGGTACGGTGAGACCATTGTGCGTAAAAGTGATGAATTTGTCACGATCATTTTTGTGGATGCCATCTTCGTCATTGAGTTCTTATGGAGGTACTGGGACGATAAATTGCGAGATGCAAATGACTGCATCTTTGGAAAACCAAGGATGGTAGAGGATATACTGACTGACTTGCTGATGCTTGAAAATCAGCTGCCATTCTTCATTCTCAAGGACCTTTTCGACTCAATTGCAAACAGAATTAAAGTCCCTAGTGTTGAGAGGCTTTCCATACGGTTTCTTCATCAGGAGTTTTCAGTTGGTGTCACAACTTTCGGGGGAATGTCATTAGAGGAGTTATTGACAAAAATAGATTCTTCCAACGAAGAAGTGCAACATCTTGTTGATCTCTTAAGAAAGCTATGGATAGCTCCTTTATCGAATGAACAAAGAAAATCTGCCACCAAAAAGAAAAAATCTGCAACAGCACCTAGCATTGAAAAGCTACACCTGGCAGGAGTCAAATTTAAGGTCAAATCAGACACGAACTTGTTTGACATACGATTCGATAAAGGGATTCTAATGATTCCAAGATTGAATATAGAGGATCCAACAGAGATTATACTTAGAAATTTAGTTGCCTTTGAACAATGCAGTACTACTTCTGACGATTATTACATTAGTGATTATGTTAGCATGATGGATGAGTTGGTGGACACTCCAAAAGATGCGGAGTTGCTTGTTAAGTACGACATTGTTAAAAATGATCTCGGAGGTGGCGATCACCAGTTGTCTAGCTTGATCAACAGCCTTTCAACTGGGATTCTATATGACTCAGGAAACTTCTATTATGGTGATCTTTGTGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

318

Amino Acids

36.77

Weight (kDa)

5.17

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 317 9.1e-80 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AciI CCGC 2 cut(s) 103, 815
AclWI GGATC 2 cut(s) 686, 699
AcsI RAATTY 3 cut(s) 143, 608, 715
AfaI GTAC 5 cut(s) 23, 113, 200, 742, 833
AflII CTTAAG 1 cut(s) 496
AgsI TTSAA 6 cut(s) 54, 290, 584, 682, 731, 900
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 6 cut(s) 58, 298, 505, 515, 589, 882
AluI AGCT 6 cut(s) 58, 298, 505, 515, 589, 882
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 2 cut(s) 686, 699
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 1 cut(s) 298
ApoI RAATTY 3 cut(s) 143, 608, 715
ArsI GACNNNNNNTTYG 6 cut(s) 221, 253, 600, 632, 632, 664
Asp700I GAANNNNTTC 1 cut(s) 49
Asp718I GGTACC 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 40, 319
AsuHPI GGTGA 3 cut(s) 128, 860, 950
AvaII GGWCC 1 cut(s) 319
BamHI GGATCC 1 cut(s) 691
BanI GGYRCC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 285
BccI CCATC 3 cut(s) 179, 247, 778
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 1 cut(s) 596
BclI TGATCA 1 cut(s) 885
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 3 cut(s) 357, 576, 879
BfrI CTTAAG 1 cut(s) 496
BisI GCNGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 300
BmcAI AGTACT 1 cut(s) 742
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 40, 319
BmiI GGNNCC 2 cut(s) 23, 693
BmrFI CCNGG 1 cut(s) 596
BmrI ACTGGG 2 cut(s) 211, 912
BmsI GCATC 5 cut(s) 157, 211, 243, 273, 802
BmuI ACTGGG 2 cut(s) 211, 912
BpiI GAAGAC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 248
Bse1I ACTGG 4 cut(s) 48, 206, 871, 907
BseBI CCWGG 1 cut(s) 596
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 3 cut(s) 172, 258, 793
BseMII CTCAG 1 cut(s) 933
BseNI ACTGG 4 cut(s) 48, 206, 871, 907
BseRI GAGGAG 1 cut(s) 452
BseXI GCAGC 1 cut(s) 285
BshFI GGCC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 21
BslFI GGGAC 2 cut(s) 218, 338
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 2 cut(s) 218, 338
BsnI GGCC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 113
Bsp143I GATC 8 cut(s) 7, 153, 490, 691, 850, 865, 885, 940
BspACI CCGC 2 cut(s) 103, 815
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 932
BspLI GGNNCC 2 cut(s) 23, 693
BspPI GGATC 2 cut(s) 686, 699
BspT107I GGYRCC 1 cut(s) 21
BspTI CTTAAG 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 4 cut(s) 48, 206, 871, 907
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 8 cut(s) 7, 153, 490, 691, 850, 865, 885, 940
BssT1I CCWWGG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 2 cut(s) 116, 381
BstAFI CTTAAG 1 cut(s) 496
BstDEI CTNAG 2 cut(s) 710, 919
BstF5I GGATG 3 cut(s) 172, 258, 793
BstKTI GATC 8 cut(s) 10, 156, 493, 694, 853, 868, 888, 943
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 8 cut(s) 7, 153, 490, 691, 850, 865, 885, 940
BstNI CCWGG 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 594
BstV1I GCAGC 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 691
BstYI RGATCY 1 cut(s) 691
BsuRI GGCC 1 cut(s) 42
BtsCI GGATG 3 cut(s) 172, 258, 793
Cfr13I GGNCC 2 cut(s) 40, 319
Csp6I GTAC 5 cut(s) 22, 112, 199, 741, 832
CviAII CATG 2 cut(s) 37, 781
CviJI RGCY 9 cut(s) 42, 58, 298, 370, 505, 515, 589, 882, 894
CviKI_1 RGCY 9 cut(s) 42, 58, 298, 370, 505, 515, 589, 882, 894
CviQI GTAC 5 cut(s) 22, 112, 199, 741, 832
DdeI CTNAG 2 cut(s) 710, 919
DpnI GATC 8 cut(s) 9, 155, 492, 693, 852, 867, 887, 942
DpnII GATC 8 cut(s) 7, 153, 490, 691, 850, 865, 885, 940
Eco130I CCWWGG 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 594
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 2 cut(s) 40, 784
FaqI GGGAC 2 cut(s) 218, 338
FatI CATG 2 cut(s) 36, 780
FbaI TGATCA 1 cut(s) 885
Fnu4HI GCNGC 1 cut(s) 299
FokI GGATG 3 cut(s) 179, 265, 800
Fsp4HI GCNGC 1 cut(s) 299
FspBI CTAG 3 cut(s) 357, 576, 879
GluI GCNGC 1 cut(s) 299
HaeIII GGCC 1 cut(s) 42
Hin1II CATG 2 cut(s) 40, 784
HinfI GANTC 8 cut(s) 329, 458, 603, 648, 661, 670, 907, 917
HphI GGTGA 3 cut(s) 128, 860, 950
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 3 cut(s) 625, 751, 857
Hpy188III TCNNGA 3 cut(s) 151, 392, 921
Hpy8I GTNNAC 1 cut(s) 799
HpyCH4III ACNGT 2 cut(s) 116, 381
HpyCH4V TGCA 7 cut(s) 71, 224, 234, 338, 478, 566, 738
HpyF3I CTNAG 2 cut(s) 710, 919
Hsp92II CATG 2 cut(s) 40, 784
KpnI GGTACC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 885
Kzo9I GATC 8 cut(s) 7, 153, 490, 691, 850, 865, 885, 940
LmnI GCTCC 1 cut(s) 520
LpnPI CCDG 9 cut(s) 61, 187, 377, 581, 585, 608, 884, 888, 906
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 5 cut(s) 157, 211, 243, 273, 802
MaeI CTAG 3 cut(s) 357, 576, 879
MaeIII GTNAC 2 cut(s) 148, 409
MalI GATC 8 cut(s) 9, 155, 492, 693, 852, 867, 887, 942
MboI GATC 8 cut(s) 7, 153, 490, 691, 850, 865, 885, 940
MboII GAAGA 7 cut(s) 17, 95, 166, 298, 377, 453, 482
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 1 cut(s) 691
MluCI AATT 7 cut(s) 98, 143, 212, 333, 345, 608, 715
MlyI GAGTC 3 cut(s) 323, 612, 911
MmeI TCCRAC 2 cut(s) 489, 719
MnlI CCTC 6 cut(s) 189, 253, 360, 430, 682, 851
MroXI GAANNNNTTC 1 cut(s) 49
MseI TTAA 6 cut(s) 27, 348, 497, 612, 828, 843
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 298
MspCI CTTAAG 1 cut(s) 496
MspR9I CCNGG 1 cut(s) 596
MunI CAATTG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 596
NdeII GATC 8 cut(s) 7, 153, 490, 691, 850, 865, 885, 940
NlaIII CATG 2 cut(s) 40, 784
NlaIV GGNNCC 2 cut(s) 23, 693
NmuCI GTSAC 2 cut(s) 148, 409
PcsI WCGNNNNNNNCGW 1 cut(s) 861
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 5 cut(s) 458, 648, 661, 670, 907
PkrI GCNGC 1 cut(s) 300
PleI GAGTC 3 cut(s) 323, 611, 911
PpsI GAGTC 3 cut(s) 323, 611, 911
PpuMI RGGWCCY 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 594
PspGI CCWGG 1 cut(s) 594
PspN4I GGNNCC 2 cut(s) 23, 693
PspPI GGNCC 2 cut(s) 40, 319
PspPPI RGGWCCY 1 cut(s) 319
PsuI RGATCY 1 cut(s) 691
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 5 cut(s) 23, 113, 200, 742, 833
RsaNI GTAC 5 cut(s) 22, 112, 199, 741, 832
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 6 cut(s) 27, 348, 497, 612, 828, 843
SatI GCNGC 1 cut(s) 299
Sau3AI GATC 8 cut(s) 7, 153, 490, 691, 850, 865, 885, 940
Sau96I GGNCC 2 cut(s) 40, 319
ScaI AGTACT 1 cut(s) 742
SchI GAGTC 3 cut(s) 323, 612, 911
ScrFI CCNGG 1 cut(s) 596
SfaNI GCATC 5 cut(s) 157, 211, 243, 273, 802
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 2 cut(s) 314, 496
SmoI CTYRAG 2 cut(s) 314, 496
Sse9I AATT 7 cut(s) 98, 143, 212, 333, 345, 608, 715
SsiI CCGC 2 cut(s) 103, 815
SspMI CTAG 3 cut(s) 357, 576, 879
StyD4I CCNGG 1 cut(s) 594
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 2 cut(s) 116, 381
TaqI TCGA 3 cut(s) 327, 524, 651
TasI AATT 7 cut(s) 98, 143, 212, 333, 345, 608, 715
TatI WGTACW 1 cut(s) 740
TfiI GAWTC 5 cut(s) 458, 648, 661, 670, 907
Tru1I TTAA 6 cut(s) 27, 348, 497, 612, 828, 843
Tru9I TTAA 6 cut(s) 27, 348, 497, 612, 828, 843
TseFI GTSAC 2 cut(s) 148, 409
TseI GCWGC 1 cut(s) 298
Tsp45I GTSAC 2 cut(s) 148, 409
TspDTI ATGAA 5 cut(s) 25, 156, 298, 377, 543
Vha464I CTTAAG 1 cut(s) 496
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 3 cut(s) 143, 608, 715
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 3 cut(s) 357, 576, 879
ZrmI AGTACT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.