RLG00000023811

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000131
Physical Location & Seq
Forward (+)
28547851 .. 28549773
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023811

Sequence Viewer

Length: 1005 bp
ATGCCCAGAAGTATAAGATGTGCTGAGGTCGACATCCGTCCTTTGGAAGAAGCACAGAAGAAGGAGAAGACGATTGACCCAATAGGTCCTCCTGCAAGTGTACTACAAAGAAGAAGTCTTTATGATGGTCTAAAGTTCTCAGCTAAAGGTGAGGTCGATGATCATGTGTTAAATTCAGTAGATAATGTTGCTAGGACTGCCGGACCAACATTGCCTGAACGGAGTCCAGAGGATCAAACAACAATGCGTAAACAAAATGTGAGTGATCCCATCGCAATTATAATAATGGATAGAGTTACAAACATGCCTAAATTTTCGCCCGACTGTTGTATCTATAAAGTCTCCGGGAGATTGTACGAAGGATACGAAGACTTCTACACGCCTCGAGTGGTCTCAATTGGACCTTATCACTATTGCAATGTAGGAAGTTCGGAAGGAATGGAAGCCTATAAATTAAACTATCTGGAGGCATTTTTCAGTCGGAACAACTTGAACTTGGACCACTGTCTTGGAGTTGTAAGAGAGCTAGAAGGAAAAGCCAGGAGTTATTATGTTGAGCCGGTCAAACTAAACAGGGAAGAATTTGCTCTAATGTTGCTGGTGGATGGAACTTTTCTTCTGGAGCTAATGCTTAGGCATTACTTTGCTGAATTTGTCGATGATTGTGATCGGATATATGGCAAGCCGAGAGTGATTCAGTATGTTTACCGCGACCTCATGTTGATTGAGAACCAAATTCCCTTCTTTGTTCTCCAGGCTTTGTATAAAGAATTGGATAGGAAGAACTGGGGAGACCAGCCATCTCTTGTCACGGTTACACATAAATTCTTCACGTATTTGGGGAAAGAAGACGAGTTTCCTGGTCCCGAGGAAGTGAAGCATTTCGTTGATTTTGTCCGATGGTCAGGGACTAGGGAAGATATTTTGACTATGTTCAACAATATTAGCAAAGAAGCGTCGCAAGATGCGTTGGAGATTATGCTGGAGTACGTTTCAAACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

335

Amino Acids

38.65

Weight (kDa)

5.13

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 111 - 302 1.2e-46 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AccI GTMKAC 1 cut(s) 30
AccII CGCG 1 cut(s) 711
AciI CCGC 1 cut(s) 709
AclWI GGATC 2 cut(s) 240, 260
AcsI RAATTY 6 cut(s) 172, 311, 581, 650, 735, 824
AfaI GTAC 3 cut(s) 102, 356, 989
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 3 cut(s) 493, 937, 996
AjnI CCWGG 3 cut(s) 539, 753, 859
AluBI AGCT 3 cut(s) 143, 526, 625
AluI AGCT 3 cut(s) 143, 526, 625
Alw26I GTCTC 3 cut(s) 346, 397, 786
AlwI GGATC 2 cut(s) 240, 260
Ama87I CYCGRG 2 cut(s) 384, 866
ApoI RAATTY 6 cut(s) 172, 311, 581, 650, 735, 824
ArsI GACNNNNNNTTYG 2 cut(s) 100, 132
Asp700I GAANNNNTTC 1 cut(s) 881
AspS9I GGNCC 5 cut(s) 86, 203, 401, 499, 863
AsuC2I CCSGG 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 161
AvaI CYCGRG 2 cut(s) 384, 866
AvaII GGWCC 5 cut(s) 86, 203, 401, 499, 863
BaeI ACNNNNGTAYC 2 cut(s) 313, 346
BbsI GAAGAC 3 cut(s) 74, 375, 855
BbvCI CCTCAGC 1 cut(s) 24
BccI CCATC 5 cut(s) 119, 278, 599, 808, 894
BciT130I CCWGG 3 cut(s) 541, 755, 861
BciVI GTATCC 1 cut(s) 356
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 1 cut(s) 346
BcoDI GTCTC 3 cut(s) 346, 397, 786
BfaI CTAG 3 cut(s) 192, 527, 912
BfuI GTATCC 1 cut(s) 356
Bme1390I CCNGG 4 cut(s) 346, 541, 755, 861
Bme18I GGWCC 5 cut(s) 86, 203, 401, 499, 863
BmeT110I CYCGRG 2 cut(s) 384, 866
BmgT120I GGNCC 5 cut(s) 86, 203, 401, 499, 863
BmiI GGNNCC 1 cut(s) 865
BmrFI CCNGG 4 cut(s) 346, 541, 755, 861
BmrI ACTGGG 1 cut(s) 796
BmsI GCATC 1 cut(s) 955
BmuI ACTGGG 1 cut(s) 796
BoxI GACNNNNGTC 2 cut(s) 36, 504
BpiI GAAGAC 3 cut(s) 74, 375, 855
BpmI CTGGAG 4 cut(s) 485, 641, 737, 1004
Bpu10I CCTNAGC 2 cut(s) 24, 632
BpuMI CCSGG 1 cut(s) 346
BsaAI YACGTR 1 cut(s) 834
BsaBI GATNNNNATC 1 cut(s) 666
BsaI GGTCTC 2 cut(s) 397, 786
BsaJI CCNNGG 1 cut(s) 867
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 559
Bse1I ACTGG 1 cut(s) 791
Bse3DI GCAATG 2 cut(s) 209, 424
Bse8I GATNNNNATC 1 cut(s) 666
BseBI CCWGG 3 cut(s) 541, 755, 861
BseDI CCNNGG 1 cut(s) 867
BseGI GGATG 2 cut(s) 33, 610
BseJI GATNNNNATC 1 cut(s) 666
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 2 cut(s) 209, 424
BseMII CTCAG 2 cut(s) 15, 153
BseNI ACTGG 1 cut(s) 791
Bsh1236I CGCG 1 cut(s) 711
BsiHKCI CYCGRG 2 cut(s) 384, 866
BsiSI CCGG 3 cut(s) 201, 345, 560
BslFI GGGAC 2 cut(s) 849, 922
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 3 cut(s) 346, 397, 786
BsmFI GGGAC 2 cut(s) 849, 922
Bso31I GGTCTC 2 cut(s) 397, 786
BsoBI CYCGRG 2 cut(s) 384, 866
Bsp143I GATC 4 cut(s) 160, 232, 265, 667
BspACI CCGC 1 cut(s) 709
BspCNI CTCAG 2 cut(s) 16, 152
BspFNI CGCG 1 cut(s) 711
BspLI GGNNCC 1 cut(s) 865
BspPI GGATC 2 cut(s) 240, 260
BspTNI GGTCTC 2 cut(s) 397, 786
BsrDI GCAATG 2 cut(s) 209, 424
BsrFI RCCGGY 1 cut(s) 559
BsrI ACTGG 1 cut(s) 791
BssAI RCCGGY 1 cut(s) 559
BssECI CCNNGG 1 cut(s) 867
BssMI GATC 4 cut(s) 160, 232, 265, 667
Bst2UI CCWGG 3 cut(s) 541, 755, 861
Bst4CI ACNGT 3 cut(s) 326, 506, 814
BstBAI YACGTR 1 cut(s) 834
BstC8I GCNNGC 1 cut(s) 683
BstDEI CTNAG 3 cut(s) 24, 139, 632
BstF5I GGATG 2 cut(s) 33, 610
BstFNI CGCG 1 cut(s) 711
BstKTI GATC 4 cut(s) 163, 235, 268, 670
BstMAI GTCTC 3 cut(s) 346, 397, 786
BstMBI GATC 4 cut(s) 160, 232, 265, 667
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 3 cut(s) 541, 755, 861
BstNSI RCATGY 1 cut(s) 307
BstPAI GACNNNNGTC 2 cut(s) 36, 504
BstSCI CCNGG 4 cut(s) 344, 539, 753, 859
BstUI CGCG 1 cut(s) 711
BstV2I GAAGAC 3 cut(s) 74, 375, 855
BstXI CCANNNNNNTGG 1 cut(s) 509
BsuI GTATCC 1 cut(s) 356
BtgZI GCGATG 1 cut(s) 256
BtsCI GGATG 2 cut(s) 33, 610
BtsIMutI CAGTG 1 cut(s) 502
Cac8I GCNNGC 1 cut(s) 683
Cfr10I RCCGGY 1 cut(s) 559
Cfr13I GGNCC 5 cut(s) 86, 203, 401, 499, 863
CseI GACGC 1 cut(s) 945
Csp6I GTAC 3 cut(s) 101, 355, 988
CviAII CATG 3 cut(s) 164, 304, 718
CviJI RGCY 9 cut(s) 143, 446, 526, 539, 559, 625, 685, 758, 799
CviKI_1 RGCY 9 cut(s) 143, 446, 526, 539, 559, 625, 685, 758, 799
CviQI GTAC 3 cut(s) 101, 355, 988
DdeI CTNAG 3 cut(s) 24, 139, 632
DpnI GATC 4 cut(s) 162, 234, 267, 669
DpnII GATC 4 cut(s) 160, 232, 265, 667
Eco31I GGTCTC 2 cut(s) 397, 786
Eco47I GGWCC 5 cut(s) 86, 203, 401, 499, 863
Eco88I CYCGRG 2 cut(s) 384, 866
EcoO109I RGGNCCY 1 cut(s) 86
EcoRII CCWGG 3 cut(s) 539, 753, 859
FaeI CATG 3 cut(s) 167, 307, 721
FaqI GGGAC 2 cut(s) 849, 922
FatI CATG 3 cut(s) 163, 303, 717
FbaI TGATCA 1 cut(s) 160
FblI GTMKAC 1 cut(s) 30
FokI GGATG 2 cut(s) 20, 617
FspBI CTAG 3 cut(s) 192, 527, 912
GsuI CTGGAG 4 cut(s) 485, 641, 737, 1004
HapII CCGG 3 cut(s) 201, 345, 560
HgaI GACGC 1 cut(s) 945
Hin1II CATG 3 cut(s) 167, 307, 721
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 2 cut(s) 223, 694
HpaII CCGG 3 cut(s) 201, 345, 560
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 4 cut(s) 31, 101, 251, 706
Hpy188I TCNGA 4 cut(s) 433, 483, 672, 899
Hpy188III TCNNGA 4 cut(s) 227, 464, 620, 866
Hpy8I GTNNAC 4 cut(s) 31, 101, 251, 706
Hpy99I CGWCG 1 cut(s) 961
HpyAV CCTTC 5 cut(s) 55, 353, 428, 524, 751
HpyCH4III ACNGT 3 cut(s) 326, 506, 814
HpyCH4IV ACGT 2 cut(s) 833, 990
HpyCH4V TGCA 2 cut(s) 95, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 3 cut(s) 24, 139, 632
HpySE526I ACGT 2 cut(s) 833, 990
Hsp92II CATG 3 cut(s) 167, 307, 721
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 4 cut(s) 160, 232, 265, 667
LmnI GCTCC 1 cut(s) 622
LweI GCATC 1 cut(s) 955
MaeI CTAG 3 cut(s) 192, 527, 912
MaeII ACGT 2 cut(s) 833, 990
MaeIII GTNAC 3 cut(s) 295, 808, 814
MalI GATC 4 cut(s) 162, 234, 267, 669
MboI GATC 4 cut(s) 160, 232, 265, 667
MfeI CAATTG 1 cut(s) 396
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 2 cut(s) 461, 951
MnlI CCTC 8 cut(s) 19, 99, 145, 223, 393, 460, 725, 862
MroXI GAANNNNTTC 1 cut(s) 881
MseI TTAA 2 cut(s) 170, 455
MspI CCGG 3 cut(s) 201, 345, 560
MspR9I CCNGG 4 cut(s) 346, 541, 755, 861
MunI CAATTG 1 cut(s) 396
MvaI CCWGG 3 cut(s) 541, 755, 861
MvnI CGCG 1 cut(s) 711
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 346
NdeII GATC 4 cut(s) 160, 232, 265, 667
NlaIII CATG 3 cut(s) 167, 307, 721
NlaIV GGNNCC 1 cut(s) 865
NmeAIII GCCGAG 1 cut(s) 711
NmuCI GTSAC 1 cut(s) 808
NspI RCATGY 1 cut(s) 307
PaeR7I CTCGAG 1 cut(s) 384
PcsI WCGNNNNNNNCGW 2 cut(s) 363, 965
PdmI GAANNNNTTC 1 cut(s) 881
PfeI GAWTC 1 cut(s) 694
PfoI TCCNGGA 1 cut(s) 344
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
Ppu21I YACGTR 1 cut(s) 834
PpuMI RGGWCCY 1 cut(s) 86
PshAI GACNNNNGTC 2 cut(s) 36, 504
PsiI TTATAA 1 cut(s) 281
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 3 cut(s) 539, 753, 859
PspGI CCWGG 3 cut(s) 539, 753, 859
PspN4I GGNNCC 1 cut(s) 865
PspPI GGNCC 5 cut(s) 86, 203, 401, 499, 863
PspPPI RGGWCCY 1 cut(s) 86
PspXI VCTCGAGB 1 cut(s) 384
RsaI GTAC 3 cut(s) 102, 356, 989
RsaNI GTAC 3 cut(s) 101, 355, 988
SalI GTCGAC 1 cut(s) 29
SaqAI TTAA 2 cut(s) 170, 455
Sau3AI GATC 4 cut(s) 160, 232, 265, 667
Sau96I GGNCC 5 cut(s) 86, 203, 401, 499, 863
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 4 cut(s) 346, 541, 755, 861
SfaNI GCATC 1 cut(s) 955
Sfr274I CTCGAG 1 cut(s) 384
SinI GGWCC 5 cut(s) 86, 203, 401, 499, 863
SlaI CTCGAG 1 cut(s) 384
SmlI CTYRAG 1 cut(s) 384
SmoI CTYRAG 1 cut(s) 384
SsiI CCGC 1 cut(s) 709
SspI AATATT 1 cut(s) 943
SspMI CTAG 3 cut(s) 192, 527, 912
StyD4I CCNGG 4 cut(s) 344, 539, 753, 859
TaaI ACNGT 3 cut(s) 326, 506, 814
TaiI ACGT 2 cut(s) 836, 993
TaqI TCGA 4 cut(s) 30, 156, 385, 657
TatI WGTACW 1 cut(s) 100
TfiI GAWTC 1 cut(s) 694
Tru1I TTAA 2 cut(s) 170, 455
Tru9I TTAA 2 cut(s) 170, 455
TscAI CASTG 1 cut(s) 509
TseFI GTSAC 1 cut(s) 808
Tsp45I GTSAC 1 cut(s) 808
TspGWI ACGGA 2 cut(s) 26, 235
TspRI CASTG 1 cut(s) 509
VpaK11BI GGWCC 5 cut(s) 86, 203, 401, 499, 863
XapI RAATTY 6 cut(s) 172, 311, 581, 650, 735, 824
XceI RCATGY 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 384
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 881
XspI CTAG 3 cut(s) 192, 527, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.