Rh3DG227000

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000131
Physical Location & Seq
Reverse (-)
21428422 .. 21434815
6394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG227000.1

Sequence Viewer

Length: 1617 bp
ATGGTCAGAGAATGCGCTGTCCCAGCAATCCGTCCTTCGGGAGAAATCCGTCCTTCGGAAGAAATCCATCCTTTGGGAGGTCAATATGGTGAAGTTTTCAACTATCTACCTTACAAGGGGCTTCTGAAAATTAACTATAGACTAAATTTGGGAATCATTTTTTTTTCTTTCCTTTTTCTGTTTTTTCCTCAACAAGCAGAAGCACCGGAGAAGGAGCCAAGAAGTCTTTATGAGGGTCTAAAACTGTGGTGTTGTAGCTCAGTCTCAGCTAAAGATCAGGTCGATAATCATGTGTCAAATTCAGCAGATGATGTTCCTAGTGCTGCTGAACCAACATCGCCTGATCGGAGTCCGAGGAATCAAACAACAATGCGTAAACAAAATGTGAGTGATCCCATTGCAATTATAATAATGGATAAAGTTACAAACAAGCCTACATTTTGGCCCGACTGCTGTATCTATAAAGTCCCCGGGAGATTGTGCAAAGGTTACGAAGACTTCTACACACCTCGGGTGGTCTCAGTTGGACCTTATCACTACTGCAATGGAGGAAGCTCGGAAGGAATGCAAGCCTATAAATTCATATACCTGGAGGCATTTTTCAGTCGGAACAACTTGAACTTGGACCACTGTCTTGGAGTTGTAAGAGAGCTAGAAGGAAAAGCCAGGAGTTATTATGTCGAGCCAGTCAAACTAAACAGTGATGAATTTGCTCTAATGTTGCTGGTGGATGGAAGTTTTCTTTTGGAGCTAATGCTTAGGCATTACTTTGTGGAAATTGTTGATAAATGTGATCGGATATATCGCAAGCCGAGAGTGATTCAGGATGTTTATCGCGACCTCTTGTTGATTGAGAACCAAATTCCCTTCTTTATTCTCGAGGCTTTGTATAAGGAATTGGATATGAAGACTTGGCGAGCCCAGCCATCTCTTGTGACGCTTACAAATGTGTTCTTCAGGTATTTGGTGGAAGTTGACAAGTTTCCTGGTCCAGAAAAAGTGAAGCATTTCGTTGATTTTATCCGATGGTACTACTTGCCCAAGAGTGACAGGAACAGTGAAAAAGGGATTATCTTTGACGTTCCAAGTGTGACAGCAATGGACGAGGCTGGAGTTAAGTTTGAGAAAGTCACGAAATCGATCACATTGCTTGACATGGAATTCACTAATGGCTCTCTGCGAATTCCGCACTTCATAGTAAATGATTGGAGTGAGACTCTCTTCAGGAATCTCATTGCGTTTGAGCAATGTCATGATCACCAAGTAAAGTACATCTCACAGTTTATGTGCCTTATGGGGTGTATGATCAGGACTCCAAAGGATGCAGATTTACTCATCGATCGCGAAATTATATCTACCACGCTAGGGACTAGTGAAGATATTTCGACCATATTCAACAAGATTAGCAAAGGTGTGACCTTGGATAGTTCATTTTATTACTTCACTCTCCTTAAAAATCTGAATAAATATTGCAGGAGCCCATGGCACAGTTGGAAAGCAACTCTGAAGAGGGACTATTTCAACACTCCATGGAAACTGGTTTCTACAATTGCTGCATTTGTATTGCTTGTCCTCACTGTTATACAAACAGTGTGCTCCATCATATCCCTATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

538

Amino Acids

62.16

Weight (kDa)

6.8

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 153 - 525 5.6e-105 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AccB7I CCANNNNNTGG 1 cut(s) 73
AccII CGCG 2 cut(s) 837, 1344
AciI CCGC 1 cut(s) 1187
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 7 cut(s) 145, 298, 578, 707, 861, 1160, 1182
AcuI CTGAAG 3 cut(s) 940, 1207, 1526
AfaI GTAC 2 cut(s) 1031, 1271
AfiI CCNNNNNNNGG 6 cut(s) 37, 55, 73, 77, 116, 1365
AgsI TTSAA 4 cut(s) 100, 619, 1396, 1522
AhlI ACTAGT 1 cut(s) 1370
AjnI CCWGG 3 cut(s) 588, 665, 985
AluBI AGCT 5 cut(s) 258, 269, 555, 652, 751
AluI AGCT 5 cut(s) 258, 269, 555, 652, 751
Alw21I GWGCWC 1 cut(s) 1598
Alw26I GTCTC 3 cut(s) 268, 523, 1208
AlwI GGATC 1 cut(s) 386
Ama87I CYCGRG 3 cut(s) 470, 510, 878
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 2 cut(s) 323, 1553
ApoI RAATTY 7 cut(s) 145, 298, 578, 707, 861, 1160, 1182
Asp700I GAANNNNTTC 1 cut(s) 1007
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 4 cut(s) 444, 527, 625, 989
AsuC2I CCSGG 2 cut(s) 471, 472
AsuHPI GGTGA 2 cut(s) 101, 1250
AvaI CYCGRG 3 cut(s) 470, 510, 878
AvaII GGWCC 3 cut(s) 527, 625, 989
BaeI ACNNNNGTAYC 2 cut(s) 439, 472
BanII GRGCYC 2 cut(s) 922, 1481
BbsI GAAGAC 2 cut(s) 501, 914
Bbv12I GWGCWC 1 cut(s) 1598
BbvI GCAGC 2 cut(s) 310, 1540
BccI CCATC 5 cut(s) 75, 725, 934, 1020, 1607
BcgI CGANNNNNNTGC 2 cut(s) 1129, 1163
BciT130I CCWGG 3 cut(s) 590, 667, 987
BclI TGATCA 2 cut(s) 1255, 1305
BcnI CCSGG 2 cut(s) 471, 472
BcoDI GTCTC 3 cut(s) 268, 523, 1208
BcuI ACTAGT 1 cut(s) 1370
BfaI CTAG 4 cut(s) 318, 653, 1364, 1371
BfmI CTRYAG 1 cut(s) 136
BisI GCNGC 2 cut(s) 324, 1554
BlsI GCNGC 2 cut(s) 325, 1555
Bme1390I CCNGG 5 cut(s) 471, 472, 590, 667, 987
Bme18I GGWCC 3 cut(s) 527, 625, 989
BmeT110I CYCGRG 3 cut(s) 470, 510, 878
BmgT120I GGNCC 4 cut(s) 444, 527, 625, 989
BmiI GGNNCC 2 cut(s) 216, 1478
BmrFI CCNGG 5 cut(s) 471, 472, 590, 667, 987
BmsI GCATC 1 cut(s) 1312
BoxI GACNNNNGTC 1 cut(s) 630
BpiI GAAGAC 2 cut(s) 501, 914
BplI GAGNNNNNCTC 2 cut(s) 1201, 1233
BpmI CTGGAG 2 cut(s) 611, 1131
Bpu10I CCTNAGC 1 cut(s) 758
BpuMI CCSGG 2 cut(s) 471, 472
Bsa29I ATCGAT 2 cut(s) 1139, 1338
BsaBI GATNNNNATC 1 cut(s) 831
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 7 cut(s) 353, 469, 470, 509, 1419, 1481, 1529
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 6 cut(s) 37, 55, 73, 77, 116, 1365
Bse1I ACTGG 2 cut(s) 686, 1542
Bse3DI GCAATG 6 cut(s) 396, 550, 1104, 1145, 1233, 1253
Bse8I GATNNNNATC 1 cut(s) 831
BseBI CCWGG 3 cut(s) 590, 667, 987
BseCI ATCGAT 2 cut(s) 1139, 1338
BseDI CCNNGG 7 cut(s) 353, 469, 470, 509, 1419, 1481, 1529
BseGI GGATG 4 cut(s) 67, 736, 832, 1327
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 6 cut(s) 37, 55, 73, 77, 116, 1365
BseMI GCAATG 6 cut(s) 396, 550, 1104, 1145, 1233, 1253
BseMII CTCAG 3 cut(s) 273, 279, 534
BseNI ACTGG 2 cut(s) 686, 1542
BseXI GCAGC 2 cut(s) 310, 1540
BseYI CCCAGC 2 cut(s) 22, 921
Bsh1236I CGCG 2 cut(s) 837, 1344
Bsh1285I CGRYCG 1 cut(s) 1342
BshFI GGCC 1 cut(s) 445
BshVI ATCGAT 2 cut(s) 1139, 1338
BsiEI CGRYCG 1 cut(s) 1342
BsiHKAI GWGCWC 1 cut(s) 1598
BsiHKCI CYCGRG 3 cut(s) 470, 510, 878
BsiSI CCGG 2 cut(s) 206, 471
BslFI GGGAC 4 cut(s) 5, 452, 1381, 1526
BslI CCNNNNNNNGG 6 cut(s) 37, 55, 73, 77, 116, 1365
BsmAI GTCTC 3 cut(s) 268, 523, 1208
BsmFI GGGAC 4 cut(s) 5, 452, 1381, 1526
BsmI GAATGC 2 cut(s) 17, 570
BsnI GGCC 1 cut(s) 445
Bso31I GGTCTC 1 cut(s) 523
BsoBI CYCGRG 3 cut(s) 470, 510, 878
Bsp1286I GDGCHC 3 cut(s) 922, 1481, 1598
Bsp143I GATC 8 cut(s) 274, 343, 391, 793, 1140, 1255, 1305, 1339
Bsp19I CCATGG 2 cut(s) 1481, 1529
Bsp68I TCGCGA 2 cut(s) 837, 1344
BspACI CCGC 1 cut(s) 1187
BspANI GGCC 1 cut(s) 445
BspCNI CTCAG 3 cut(s) 272, 278, 533
BspDI ATCGAT 2 cut(s) 1139, 1338
BspFNI CGCG 2 cut(s) 837, 1344
BspHI TCATGA 1 cut(s) 1252
BspLI GGNNCC 2 cut(s) 216, 1478
BspPI GGATC 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 523
BsrDI GCAATG 6 cut(s) 396, 550, 1104, 1145, 1233, 1253
BsrI ACTGG 2 cut(s) 686, 1542
BssECI CCNNGG 7 cut(s) 353, 469, 470, 509, 1419, 1481, 1529
BssMI GATC 8 cut(s) 274, 343, 391, 793, 1140, 1255, 1305, 1339
BssT1I CCWWGG 3 cut(s) 1419, 1481, 1529
Bst2UI CCWGG 3 cut(s) 590, 667, 987
Bst4CI ACNGT 8 cut(s) 246, 632, 701, 1058, 1281, 1490, 1579, 1591
Bst6I CTCTTC 2 cut(s) 1226, 1502
BstC8I GCNNGC 3 cut(s) 570, 809, 918
BstDEI CTNAG 4 cut(s) 259, 265, 520, 758
BstDSI CCRYGG 2 cut(s) 1481, 1529
BstENI CCTNNNNNAGG 1 cut(s) 75
BstF5I GGATG 4 cut(s) 67, 736, 832, 1327
BstFNI CGCG 2 cut(s) 837, 1344
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 8 cut(s) 277, 346, 394, 796, 1143, 1258, 1308, 1342
BstMAI GTCTC 3 cut(s) 268, 523, 1208
BstMBI GATC 8 cut(s) 274, 343, 391, 793, 1140, 1255, 1305, 1339
BstMCI CGRYCG 1 cut(s) 1342
BstMWI GCNNNNNNNGC 3 cut(s) 23, 922, 1186
BstNI CCWGG 3 cut(s) 590, 667, 987
BstPAI GACNNNNGTC 1 cut(s) 630
BstSCI CCNGG 5 cut(s) 469, 470, 588, 665, 985
BstSFI CTRYAG 1 cut(s) 136
BstUI CGCG 2 cut(s) 837, 1344
BstV1I GCAGC 2 cut(s) 310, 1540
BstV2I GAAGAC 2 cut(s) 501, 914
BstXI CCANNNNNNTGG 1 cut(s) 635
Bsu15I ATCGAT 2 cut(s) 1139, 1338
BsuRI GGCC 1 cut(s) 445
BsuTUI ATCGAT 2 cut(s) 1139, 1338
BtgI CCRYGG 2 cut(s) 1481, 1529
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 4 cut(s) 67, 736, 832, 1327
BtsIMutI CAGTG 5 cut(s) 628, 706, 1063, 1575, 1596
BtuMI TCGCGA 2 cut(s) 837, 1344
Cac8I GCNNGC 3 cut(s) 570, 809, 918
CciI TCATGA 1 cut(s) 1252
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 4 cut(s) 444, 527, 625, 989
Cfr9I CCCGGG 1 cut(s) 470
ClaI ATCGAT 2 cut(s) 1139, 1338
CseI GACGC 1 cut(s) 946
Csp6I GTAC 2 cut(s) 1030, 1270
CviAII CATG 5 cut(s) 290, 1156, 1253, 1482, 1530
CviQI GTAC 2 cut(s) 1030, 1270
DdeI CTNAG 4 cut(s) 259, 265, 520, 758
DpnI GATC 8 cut(s) 276, 345, 393, 795, 1142, 1257, 1307, 1341
DpnII GATC 8 cut(s) 274, 343, 391, 793, 1140, 1255, 1305, 1339
Eam1104I CTCTTC 2 cut(s) 1226, 1502
EarI CTCTTC 2 cut(s) 1226, 1502
Eco130I CCWWGG 3 cut(s) 1419, 1481, 1529
Eco24I GRGCYC 2 cut(s) 922, 1481
Eco31I GGTCTC 1 cut(s) 523
Eco47I GGWCC 3 cut(s) 527, 625, 989
Eco57I CTGAAG 3 cut(s) 940, 1207, 1526
Eco88I CYCGRG 3 cut(s) 470, 510, 878
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoRI GAATTC 2 cut(s) 1160, 1182
EcoRII CCWGG 3 cut(s) 588, 665, 985
EcoT14I CCWWGG 3 cut(s) 1419, 1481, 1529
EcoT38I GRGCYC 2 cut(s) 922, 1481
ErhI CCWWGG 3 cut(s) 1419, 1481, 1529
FaeI CATG 5 cut(s) 293, 1159, 1256, 1485, 1533
FaqI GGGAC 4 cut(s) 5, 452, 1381, 1526
FatI CATG 5 cut(s) 289, 1155, 1252, 1481, 1529
FbaI TGATCA 2 cut(s) 1255, 1305
Fnu4HI GCNGC 2 cut(s) 324, 1554
FokI GGATG 4 cut(s) 54, 743, 839, 1334
FriOI GRGCYC 2 cut(s) 922, 1481
Fsp4HI GCNGC 2 cut(s) 324, 1554
FspBI CTAG 4 cut(s) 318, 653, 1364, 1371
GlaI GCGC 1 cut(s) 16
GluI GCNGC 2 cut(s) 324, 1554
GsaI CCCAGC 2 cut(s) 26, 925
GsuI CTGGAG 2 cut(s) 611, 1131
HaeIII GGCC 1 cut(s) 445
HapII CCGG 2 cut(s) 206, 471
HgaI GACGC 1 cut(s) 946
HhaI GCGC 1 cut(s) 17
Hin1II CATG 5 cut(s) 293, 1159, 1256, 1485, 1533
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 976
HindII GTYRAC 1 cut(s) 976
HinfI GANTC 7 cut(s) 153, 349, 358, 820, 1216, 1228, 1312
HpaII CCGG 2 cut(s) 206, 471
HphI GGTGA 2 cut(s) 101, 1250
Hpy166II GTNNAC 2 cut(s) 377, 976
Hpy8I GTNNAC 2 cut(s) 377, 976
HpyAV CCTTC 6 cut(s) 45, 63, 205, 554, 650, 877
HpyCH4III ACNGT 8 cut(s) 246, 632, 701, 1058, 1281, 1490, 1579, 1591
HpyCH4IV ACGT 1 cut(s) 1080
HpyCH4V TGCA 7 cut(s) 401, 483, 543, 568, 1325, 1473, 1556
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 922, 1186
HpyF3I CTNAG 4 cut(s) 259, 265, 520, 758
HpySE526I ACGT 1 cut(s) 1080
Hsp92II CATG 5 cut(s) 293, 1159, 1256, 1485, 1533
HspAI GCGC 1 cut(s) 15
Ksp22I TGATCA 2 cut(s) 1255, 1305
Kzo9I GATC 8 cut(s) 274, 343, 391, 793, 1140, 1255, 1305, 1339
LmnI GCTCC 4 cut(s) 214, 748, 1476, 1601
Lsp1109I GCAGC 2 cut(s) 310, 1540
LweI GCATC 1 cut(s) 1312
MaeI CTAG 4 cut(s) 318, 653, 1364, 1371
MaeII ACGT 1 cut(s) 1080
MaeIII GTNAC 7 cut(s) 421, 488, 934, 1046, 1090, 1129, 1414
MalI GATC 8 cut(s) 276, 345, 393, 795, 1142, 1257, 1307, 1341
MboI GATC 8 cut(s) 274, 343, 391, 793, 1140, 1255, 1305, 1339
MboII GAAGA 7 cut(s) 71, 506, 919, 946, 1213, 1388, 1519
MfeI CAATTG 1 cut(s) 1548
MhlI GDGCHC 3 cut(s) 922, 1481, 1598
MlyI GAGTC 3 cut(s) 358, 1210, 1306
MmeI TCCRAC 3 cut(s) 505, 587, 1472
MroXI GAANNNNTTC 1 cut(s) 1007
MseI TTAA 3 cut(s) 132, 1116, 1452
MspI CCGG 2 cut(s) 206, 471
MspR9I CCNGG 5 cut(s) 471, 472, 590, 667, 987
MunI CAATTG 1 cut(s) 1548
Mva1269I GAATGC 2 cut(s) 17, 570
MvaI CCWGG 3 cut(s) 590, 667, 987
MvnI CGCG 2 cut(s) 837, 1344
MwoI GCNNNNNNNGC 3 cut(s) 23, 922, 1186
NciI CCSGG 2 cut(s) 471, 472
NcoI CCATGG 2 cut(s) 1481, 1529
NdeII GATC 8 cut(s) 274, 343, 391, 793, 1140, 1255, 1305, 1339
NlaIII CATG 5 cut(s) 293, 1159, 1256, 1485, 1533
NlaIV GGNNCC 2 cut(s) 216, 1478
NmeAIII GCCGAG 1 cut(s) 837
NmuCI GTSAC 5 cut(s) 934, 1046, 1090, 1129, 1414
NruI TCGCGA 2 cut(s) 837, 1344
PaeR7I CTCGAG 1 cut(s) 878
PagI TCATGA 1 cut(s) 1252
PctI GAATGC 2 cut(s) 17, 570
PdmI GAANNNNTTC 1 cut(s) 1007
PfeI GAWTC 4 cut(s) 153, 358, 820, 1228
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 2 cut(s) 325, 1555
Ple19I CGATCG 1 cut(s) 1342
PleI GAGTC 3 cut(s) 357, 1210, 1306
PpsI GAGTC 3 cut(s) 357, 1210, 1306
PshAI GACNNNNGTC 1 cut(s) 630
PsiI TTATAA 1 cut(s) 407
Psp6I CCWGG 3 cut(s) 588, 665, 985
PspFI CCCAGC 2 cut(s) 22, 921
PspGI CCWGG 3 cut(s) 588, 665, 985
PspN4I GGNNCC 2 cut(s) 216, 1478
PspPI GGNCC 4 cut(s) 444, 527, 625, 989
PvuI CGATCG 1 cut(s) 1342
RruI TCGCGA 2 cut(s) 837, 1344
RsaI GTAC 2 cut(s) 1031, 1271
RsaNI GTAC 2 cut(s) 1030, 1270
SaqAI TTAA 3 cut(s) 132, 1116, 1452
SatI GCNGC 2 cut(s) 324, 1554
Sau3AI GATC 8 cut(s) 274, 343, 391, 793, 1140, 1255, 1305, 1339
Sau96I GGNCC 4 cut(s) 444, 527, 625, 989
SchI GAGTC 3 cut(s) 358, 1210, 1306
ScrFI CCNGG 5 cut(s) 471, 472, 590, 667, 987
SduI GDGCHC 3 cut(s) 922, 1481, 1598
SfaNI GCATC 1 cut(s) 1312
SfcI CTRYAG 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 878
SinI GGWCC 3 cut(s) 527, 625, 989
SlaI CTCGAG 1 cut(s) 878
SmaI CCCGGG 1 cut(s) 472
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
SpeI ACTAGT 1 cut(s) 1370
SsiI CCGC 1 cut(s) 1187
SspI AATATT 1 cut(s) 1469
SspMI CTAG 4 cut(s) 318, 653, 1364, 1371
StyD4I CCNGG 5 cut(s) 469, 470, 588, 665, 985
StyI CCWWGG 3 cut(s) 1419, 1481, 1529
TaaI ACNGT 8 cut(s) 246, 632, 701, 1058, 1281, 1490, 1579, 1591
TaiI ACGT 1 cut(s) 1083
TaqI TCGA 6 cut(s) 282, 681, 879, 1139, 1338, 1385
TatI WGTACW 1 cut(s) 1269
TfiI GAWTC 4 cut(s) 153, 358, 820, 1228
Tru1I TTAA 3 cut(s) 132, 1116, 1452
Tru9I TTAA 3 cut(s) 132, 1116, 1452
TscAI CASTG 5 cut(s) 635, 706, 1063, 1582, 1596
TseFI GTSAC 5 cut(s) 934, 1046, 1090, 1129, 1414
TseI GCWGC 2 cut(s) 323, 1553
Tsp45I GTSAC 5 cut(s) 934, 1046, 1090, 1129, 1414
TspDTI ATGAA 5 cut(s) 571, 720, 920, 1183, 1419
TspGWI ACGGA 2 cut(s) 20, 38
TspMI CCCGGG 1 cut(s) 470
TspRI CASTG 5 cut(s) 635, 706, 1063, 1582, 1596
Van91I CCANNNNNTGG 1 cut(s) 73
VpaK11BI GGWCC 3 cut(s) 527, 625, 989
XagI CCTNNNNNAGG 1 cut(s) 75
XapI RAATTY 7 cut(s) 145, 298, 578, 707, 861, 1160, 1182
XcmI CCANNNNNNNNNTGG 1 cut(s) 1488
XhoI CTCGAG 1 cut(s) 878
XmaI CCCGGG 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 1007
XspI CTAG 4 cut(s) 318, 653, 1364, 1371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.