RchiOBHm_Chr3g0452021

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000131
Physical Location & Seq
Reverse (-)
2858511 .. 2859149
639 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41923

Sequence Viewer

Length: 639 bp
ATGCTGCAAGATGTGTGGCCTGACATGCAATTGCTTGAAAATCAGTTGCCATTCTTCATTCTTGATGATCTTTTTGAGCCCCAGAAAGTTAGGATCTCTTCTAAGAGTGACAGTAGTGTGAGGCTTTCGATAACTAATTTGTCTGAAAAATTCGTCAAGTCTCAAATGCATATAGAGGGAGTGGATGATTGTCTGAAGAGGATATCTAAAGCAGATCATTTTGTTGATTTCATAAGAACTTTATGTCTACCCTGGGAGTTTTCACATGAAGTTGGAGGGGAGTTGAAAACTGTAACCACACTCAGCATGAGAGAGCTAGACCGTGCCGGGGTCAAATTCAAGGTGGGATCGAGCAAAAACTTATTTGACATAAGGTTCACTGATGGGGTACTTGAAGTTCCAAAGTTAACTCTAAGTGATGAAACATGGATCAGAATCCGAAACCTCCTGGCCTTTGAACAATGCCAGTGCATCGAGAATTATGTGTACGACTATGTTTTCATCATGAAATGCTTTGTGAGAACAAGAAAGGATGTGGAATTGCTTATGCAGCACGGAATTGTTGAAAATAGGCTTGGTGACAGCAGAGGCGTATACTCTGATCAACAACCTTGCAGATGGTGTTATCGTGAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

212

Amino Acids

24.87

Weight (kDa)

5.65

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 2 - 198 1e-45 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 247, 594
AclWI GGATC 3 cut(s) 101, 355, 437
AcsI RAATTY 2 cut(s) 149, 335
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 2 cut(s) 390, 488
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 6 cut(s) 38, 286, 340, 395, 458, 566
AjnI CCWGG 2 cut(s) 251, 447
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 3 cut(s) 101, 355, 437
AoxI GGCC 2 cut(s) 17, 450
ApeKI GCWGC 2 cut(s) 4, 550
ApoI RAATTY 2 cut(s) 149, 335
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 590
BanII GRGCYC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 562
BccI CCATC 2 cut(s) 377, 612
BciT130I CCWGG 2 cut(s) 253, 449
BclI TGATCA 1 cut(s) 601
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 165
BfaI CTAG 2 cut(s) 317, 637
BisI GCNGC 2 cut(s) 5, 551
BlsI GCNGC 2 cut(s) 6, 552
Bme1390I CCNGG 3 cut(s) 253, 328, 449
BmrFI CCNGG 3 cut(s) 253, 328, 449
BmsI GCATC 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 251, 252, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 466
Bse8I GATNNNNATC 1 cut(s) 434
BseBI CCWGG 2 cut(s) 253, 449
BseDI CCNNGG 3 cut(s) 251, 252, 327
BseGI GGATG 2 cut(s) 190, 538
BseJI GATNNNNATC 1 cut(s) 434
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 466
BseXI GCAGC 1 cut(s) 562
BshFI GGCC 2 cut(s) 19, 452
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 165
BsnI GGCC 2 cut(s) 19, 452
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 6 cut(s) 67, 93, 214, 347, 429, 601
BspANI GGCC 2 cut(s) 19, 452
BspCNI CTCAG 1 cut(s) 315
BspHI TCATGA 1 cut(s) 504
BspPI GGATC 3 cut(s) 101, 355, 437
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 3 cut(s) 251, 252, 327
BssMI GATC 6 cut(s) 67, 93, 214, 347, 429, 601
BssNAI GTATAC 1 cut(s) 595
Bst1107I GTATAC 1 cut(s) 595
Bst2UI CCWGG 2 cut(s) 253, 449
Bst4CI ACNGT 3 cut(s) 113, 292, 323
Bst6I CTCTTC 2 cut(s) 103, 191
BstDEI CTNAG 3 cut(s) 102, 302, 413
BstF5I GGATG 2 cut(s) 190, 538
BstKTI GATC 6 cut(s) 70, 96, 217, 350, 432, 604
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 6 cut(s) 67, 93, 214, 347, 429, 601
BstMWI GCNNNNNNNGC 2 cut(s) 25, 550
BstNI CCWGG 2 cut(s) 253, 449
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 3 cut(s) 251, 326, 447
BstV1I GCAGC 1 cut(s) 562
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BstZ17I GTATAC 1 cut(s) 595
BsuRI GGCC 2 cut(s) 19, 452
BtsCI GGATG 2 cut(s) 190, 538
BtsIMutI CAGTG 2 cut(s) 378, 473
CciI TCATGA 1 cut(s) 504
Csp6I GTAC 2 cut(s) 389, 487
CspCI CAANNNNNGTGG 1 cut(s) 31
CviAII CATG 5 cut(s) 25, 266, 307, 426, 505
CviJI RGCY 6 cut(s) 19, 79, 124, 316, 452, 574
CviKI_1 RGCY 6 cut(s) 19, 79, 124, 316, 452, 574
CviQI GTAC 2 cut(s) 389, 487
DdeI CTNAG 3 cut(s) 102, 302, 413
DpnI GATC 6 cut(s) 69, 95, 216, 349, 431, 603
DpnII GATC 6 cut(s) 67, 93, 214, 347, 429, 601
Eam1104I CTCTTC 2 cut(s) 103, 191
EarI CTCTTC 2 cut(s) 103, 191
Eco24I GRGCYC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 251, 447
EcoRV GATATC 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 81
FaeI CATG 5 cut(s) 28, 269, 310, 429, 508
FatI CATG 5 cut(s) 24, 265, 306, 425, 504
FbaI TGATCA 1 cut(s) 601
FblI GTMKAC 2 cut(s) 247, 594
Fnu4HI GCNGC 2 cut(s) 5, 551
FokI GGATG 2 cut(s) 197, 545
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 5, 551
FspBI CTAG 2 cut(s) 317, 637
GluI GCNGC 2 cut(s) 5, 551
HaeIII GGCC 2 cut(s) 19, 452
HapII CCGG 1 cut(s) 327
Hin1II CATG 5 cut(s) 28, 269, 310, 429, 508
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HinfI GANTC 1 cut(s) 435
HpaI GTTAAC 1 cut(s) 408
HpaII CCGG 1 cut(s) 327
HphI GGTGA 1 cut(s) 590
Hpy166II GTNNAC 6 cut(s) 248, 378, 408, 487, 595, 632
Hpy188I TCNGA 5 cut(s) 145, 195, 434, 440, 601
Hpy188III TCNNGA 4 cut(s) 62, 475, 505, 629
Hpy8I GTNNAC 6 cut(s) 248, 378, 408, 487, 595, 632
HpyCH4III ACNGT 3 cut(s) 113, 292, 323
HpyCH4V TGCA 6 cut(s) 7, 28, 169, 471, 550, 615
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 550
HpyF3I CTNAG 3 cut(s) 102, 302, 413
Hsp92II CATG 5 cut(s) 28, 269, 310, 429, 508
Ksp22I TGATCA 1 cut(s) 601
KspAI GTTAAC 1 cut(s) 408
Kzo9I GATC 6 cut(s) 67, 93, 214, 347, 429, 601
LpnPI CCDG 8 cut(s) 33, 95, 238, 265, 340, 434, 461, 479
Lsp1109I GCAGC 1 cut(s) 562
LweI GCATC 1 cut(s) 480
MaeI CTAG 2 cut(s) 317, 637
MaeIII GTNAC 3 cut(s) 107, 292, 578
MalI GATC 6 cut(s) 69, 95, 216, 349, 431, 603
MboI GATC 6 cut(s) 67, 93, 214, 347, 429, 601
MboII GAAGA 3 cut(s) 46, 90, 208
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 7 cut(s) 29, 136, 149, 335, 478, 539, 558
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 6 cut(s) 114, 169, 192, 269, 455, 581
Mph1103I ATGCAT 1 cut(s) 171
MseI TTAA 1 cut(s) 407
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 3 cut(s) 253, 328, 449
MunI CAATTG 1 cut(s) 29
MvaI CCWGG 2 cut(s) 253, 449
MwoI GCNNNNNNNGC 2 cut(s) 25, 550
NciI CCSGG 1 cut(s) 328
NdeII GATC 6 cut(s) 67, 93, 214, 347, 429, 601
NlaIII CATG 5 cut(s) 28, 269, 310, 429, 508
NmuCI GTSAC 2 cut(s) 107, 578
NsiI ATGCAT 1 cut(s) 171
NspI RCATGY 1 cut(s) 28
PagI TCATGA 1 cut(s) 504
PasI CCCWGGG 1 cut(s) 252
PfeI GAWTC 1 cut(s) 435
PkrI GCNGC 2 cut(s) 6, 552
Psp6I CCWGG 2 cut(s) 251, 447
PspGI CCWGG 2 cut(s) 251, 447
PsrI GAACNNNNNNTAC 2 cut(s) 381, 413
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 2 cut(s) 390, 488
RsaNI GTAC 2 cut(s) 389, 487
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 2 cut(s) 5, 551
Sau3AI GATC 6 cut(s) 67, 93, 214, 347, 429, 601
ScrFI CCNGG 3 cut(s) 253, 328, 449
SduI GDGCHC 1 cut(s) 81
SetI ASST 5 cut(s) 318, 345, 377, 447, 613
SfaNI GCATC 1 cut(s) 480
Sse9I AATT 7 cut(s) 29, 136, 149, 335, 478, 539, 558
SspMI CTAG 2 cut(s) 317, 637
StyD4I CCNGG 3 cut(s) 251, 326, 447
TaaI ACNGT 3 cut(s) 113, 292, 323
TaqI TCGA 3 cut(s) 128, 350, 474
TasI AATT 7 cut(s) 29, 136, 149, 335, 478, 539, 558
TfiI GAWTC 1 cut(s) 435
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TscAI CASTG 2 cut(s) 385, 473
TseFI GTSAC 2 cut(s) 107, 578
TseI GCWGC 2 cut(s) 4, 550
Tsp45I GTSAC 2 cut(s) 107, 578
TspDTI ATGAA 6 cut(s) 46, 220, 282, 435, 490, 521
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 2 cut(s) 385, 473
XapI RAATTY 2 cut(s) 149, 335
XceI RCATGY 1 cut(s) 28
XmiI GTMKAC 2 cut(s) 247, 594
XspI CTAG 2 cut(s) 317, 637
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.