Rw6G001700

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000131
Physical Location & Seq
Forward (+)
2677349 .. 2678617
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G001700.1

Sequence Viewer

Length: 1269 bp
ATGGGAGAGCTACAGCCAAAAAATCTGAAACAAAAGTTGGAAAAAGTGTCTCCACTTTCTCCTCAGTGTTGTATCTACAGGGTTCCAAAGAGACTACGTAACCAGAATGAGAAGGCATACACACCTCAAGTGGTCTCAATAGGCCCGCTTCACCATGGTGGAAAAGACCTAGAAGCCATGGAAGATCACAAAATACGGTATGTGAAGGACTTTCTAGAACGGACCAAGGTAAGCATGGAGGAATGTTTCAATGCCTTGAAGGGGCGGGAGACAGAAATCCGTGCTTGTTATGCAGTAAAAATTGAATACGAAGAAACTGAGCTTGTGGAAATGGTTCTTGTAGATTCCATTTTCATCTTTGAGCTCCTGCTGAGGGTTCCTTACCAAGCACTGCAAAAGGAAAAGGTTGACCGTGTATTCGGAAAACCATGGATGCAAAGGGACATAACATATGACTTGTTATTGCTTGAAAATCAGATCCCATTCTTCATTCTTGAGTATCTTTATTCCTTAGCCCTTGCCCGTAATACTATTCCTCTGGAAGCTAATGGGGTGCTTTCTCTCTTTGAGCTTACCCACCGATTTTTGGAGAAGAGCGTATACATAAGGCCATATGATCGAGAAATGAAGAAGAAACTCGAGCATAAACAAATACAACATTTTGTTGATTTTGTCCTCACATGTCATCGACCTTTACCTTCTGAGCTTCCCAAGGCGGAGAAACTCAAGAGTTTAACCATACCAAGTGCAACAGAATTATACCAGTCCGGAGTCAAGTTTGTGAAAGGCGATGACAAAAACATATTTGACATAAAATTTGAGAATGGGGTCCTGAAAATTCCACACTTGAGAATCCGCGGGTCAACAGAAATTTTCTTTCGGAATCTCATTGCCTACGAGCAGTGTGAGCTCCATGATCACTACATCCACGATTATGTGTTCATCATTGACGGCCTGGTTGAAAGTTCTAAGGATGTGGACTTGCTTGTTAAGGCGGGAATCCTTGACTCTAAGCTACCGGATAGTGAAGCAACAACACGTTTTATCAATTCCCTTGACTCGGGGCCTATTCTGTTCAGTAAAAAATCCTATGTTACTGATCTCTGTGACGCTCTGAATGCATACTATAGGGTCCCCTGGCACAAGTGGAAGGCAAGCTTGAAACAGGACTACTTTAGTACTCCATGGGCTGGAATGTCTATTGTTGTAGCGGCTATTCTCGTTGTGCTCACTTTTATTCAAACAGTGTGCTCTATAATGTCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

422

Amino Acids

48.97

Weight (kDa)

7.17

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 25 - 410 5.2e-114 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1190
AccI GTMKAC 1 cut(s) 600
AccII CGCG 1 cut(s) 858
AccIII TCCGGA 1 cut(s) 767
AciI CCGC 7 cut(s) 146, 265, 716, 856, 858, 995, 1211
AclWI GGATC 1 cut(s) 472
AcsI RAATTY 3 cut(s) 815, 837, 870
AfaI GTAC 1 cut(s) 1180
AfiI CCNNNNNNNGG 5 cut(s) 261, 373, 586, 1060, 1190
AflIII ACRYGT 2 cut(s) 680, 1037
AgsI TTSAA 7 cut(s) 250, 259, 305, 470, 962, 1162, 1241
AjnI CCWGG 2 cut(s) 954, 1136
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 9 cut(s) 10, 322, 364, 545, 571, 706, 910, 1015, 1158
AluI AGCT 9 cut(s) 10, 322, 364, 545, 571, 706, 910, 1015, 1158
Alw21I GWGCWC 4 cut(s) 366, 912, 1230, 1253
Alw26I GTCTC 4 cut(s) 54, 85, 139, 263
AlwI GGATC 1 cut(s) 472
Ama87I CYCGRG 2 cut(s) 638, 1060
Aor13HI TCCGGA 1 cut(s) 767
AoxI GGCC 4 cut(s) 142, 608, 952, 1064
ApoI RAATTY 3 cut(s) 815, 837, 870
ArsI GACNNNNNNTTYG 4 cut(s) 401, 433, 800, 832
Asp700I GAANNNNTTC 1 cut(s) 333
AspS9I GGNCC 5 cut(s) 143, 222, 829, 1064, 1132
AsuHPI GGTGA 1 cut(s) 143
AvaI CYCGRG 2 cut(s) 638, 1060
AvaII GGWCC 3 cut(s) 222, 829, 1132
BanII GRGCYC 2 cut(s) 366, 912
BarI GAAGNNNNNNTAC 2 cut(s) 584, 616
Bbv12I GWGCWC 4 cut(s) 366, 912, 1230, 1253
BbvCI CCTCAGC 1 cut(s) 371
BceAI ACGGC 1 cut(s) 967
BciT130I CCWGG 2 cut(s) 956, 1138
BclI TGATCA 1 cut(s) 916
BcoDI GTCTC 4 cut(s) 54, 85, 139, 263
BfaI CTAG 2 cut(s) 170, 215
BfmI CTRYAG 3 cut(s) 11, 76, 1126
BisI GCNGC 1 cut(s) 1212
BlsI GCNGC 1 cut(s) 1213
BmcAI AGTACT 1 cut(s) 1180
Bme1390I CCNGG 2 cut(s) 956, 1138
Bme18I GGWCC 3 cut(s) 222, 829, 1132
BmeT110I CYCGRG 2 cut(s) 638, 1060
BmgT120I GGNCC 5 cut(s) 143, 222, 829, 1064, 1132
BmiI GGNNCC 6 cut(s) 84, 378, 830, 1065, 1133, 1134
BmrFI CCNGG 2 cut(s) 956, 1138
BmsI GCATC 1 cut(s) 423
Bpu10I CCTNAGC 2 cut(s) 371, 511
BpuEI CTTGAG 4 cut(s) 111, 515, 710, 868
BsaAI YACGTR 1 cut(s) 98
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 8 cut(s) 154, 177, 225, 428, 711, 856, 1136, 1184
BsaWI WCCGGW 2 cut(s) 767, 1018
Bsc4I CCNNNNNNNGG 5 cut(s) 261, 373, 586, 1060, 1190
Bse1I ACTGG 1 cut(s) 763
Bse3DI GCAATG 1 cut(s) 888
BseAI TCCGGA 1 cut(s) 767
BseBI CCWGG 2 cut(s) 956, 1138
BseDI CCNNGG 8 cut(s) 154, 177, 225, 428, 711, 856, 1136, 1184
BseGI GGATG 3 cut(s) 438, 924, 979
BseLI CCNNNNNNNGG 5 cut(s) 261, 373, 586, 1060, 1190
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 4 cut(s) 77, 309, 362, 693
BseNI ACTGG 1 cut(s) 763
BseRI GAGGAG 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 858
BshFI GGCC 4 cut(s) 144, 610, 954, 1066
BsiHKAI GWGCWC 4 cut(s) 366, 912, 1230, 1253
BsiHKCI CYCGRG 2 cut(s) 638, 1060
BsiSI CCGG 2 cut(s) 768, 1019
BslFI GGGAC 2 cut(s) 455, 1118
BslI CCNNNNNNNGG 5 cut(s) 261, 373, 586, 1060, 1190
BsmAI GTCTC 4 cut(s) 54, 85, 139, 263
BsmFI GGGAC 2 cut(s) 455, 1118
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 4 cut(s) 144, 610, 954, 1066
Bso31I GGTCTC 1 cut(s) 139
BsoBI CYCGRG 2 cut(s) 638, 1060
Bsp1286I GDGCHC 4 cut(s) 366, 912, 1230, 1253
Bsp13I TCCGGA 1 cut(s) 767
Bsp143I GATC 5 cut(s) 184, 477, 616, 916, 1099
Bsp19I CCATGG 4 cut(s) 154, 177, 428, 1184
BspACI CCGC 7 cut(s) 146, 265, 716, 856, 858, 995, 1211
BspANI GGCC 4 cut(s) 144, 610, 954, 1066
BspCNI CTCAG 4 cut(s) 76, 310, 363, 694
BspEI TCCGGA 1 cut(s) 767
BspFNI CGCG 1 cut(s) 858
BspLI GGNNCC 6 cut(s) 84, 378, 830, 1065, 1133, 1134
BspPI GGATC 1 cut(s) 472
BspQI GCTCTTC 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 888
BsrI ACTGG 1 cut(s) 763
BssECI CCNNGG 8 cut(s) 154, 177, 225, 428, 711, 856, 1136, 1184
BssMI GATC 5 cut(s) 184, 477, 616, 916, 1099
BssNAI GTATAC 1 cut(s) 601
BssT1I CCWWGG 6 cut(s) 154, 177, 225, 428, 711, 1184
Bst1107I GTATAC 1 cut(s) 601
Bst2UI CCWGG 2 cut(s) 956, 1138
Bst4CI ACNGT 3 cut(s) 198, 413, 1246
Bst6I CTCTTC 1 cut(s) 587
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 146, 1156
BstDEI CTNAG 7 cut(s) 63, 318, 371, 511, 702, 969, 1011
BstDSI CCRYGG 5 cut(s) 154, 177, 428, 856, 1184
BstF5I GGATG 3 cut(s) 438, 924, 979
BstFNI CGCG 1 cut(s) 858
BstKTI GATC 5 cut(s) 187, 480, 619, 919, 1102
BstMAI GTCTC 4 cut(s) 54, 85, 139, 263
BstMBI GATC 5 cut(s) 184, 477, 616, 916, 1099
BstMWI GCNNNNNNNGC 3 cut(s) 290, 907, 1118
BstNI CCWGG 2 cut(s) 956, 1138
BstNSI RCATGY 1 cut(s) 684
BstSCI CCNGG 2 cut(s) 954, 1136
BstSFI CTRYAG 3 cut(s) 11, 76, 1126
BstSNI TACGTA 1 cut(s) 98
BstUI CGCG 1 cut(s) 858
BstX2I RGATCY 1 cut(s) 477
BstYI RGATCY 1 cut(s) 477
BstZ17I GTATAC 1 cut(s) 601
BsuRI GGCC 4 cut(s) 144, 610, 954, 1066
BtgI CCRYGG 5 cut(s) 154, 177, 428, 856, 1184
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 3 cut(s) 438, 924, 979
BtsI GCAGTG 2 cut(s) 389, 908
BtsIMutI CAGTG 4 cut(s) 71, 389, 908, 1251
Cac8I GCNNGC 2 cut(s) 146, 1156
Cfr13I GGNCC 5 cut(s) 143, 222, 829, 1064, 1132
Cfr42I CCGCGG 1 cut(s) 859
CseI GACGC 1 cut(s) 1118
Csp6I GTAC 1 cut(s) 1179
CviAII CATG 7 cut(s) 155, 178, 235, 429, 681, 914, 1185
CviQI GTAC 1 cut(s) 1179
DdeI CTNAG 7 cut(s) 63, 318, 371, 511, 702, 969, 1011
DpnI GATC 5 cut(s) 186, 479, 618, 918, 1101
DpnII GATC 5 cut(s) 184, 477, 616, 916, 1099
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
EciI GGCGGA 1 cut(s) 731
Ecl136II GAGCTC 2 cut(s) 364, 910
Eco105I TACGTA 1 cut(s) 98
Eco130I CCWWGG 6 cut(s) 154, 177, 225, 428, 711, 1184
Eco24I GRGCYC 2 cut(s) 366, 912
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 3 cut(s) 222, 829, 1132
Eco53kI GAGCTC 2 cut(s) 364, 910
Eco88I CYCGRG 2 cut(s) 638, 1060
EcoICRI GAGCTC 2 cut(s) 364, 910
EcoO109I RGGNCCY 3 cut(s) 829, 1064, 1132
EcoRII CCWGG 2 cut(s) 954, 1136
EcoT14I CCWWGG 6 cut(s) 154, 177, 225, 428, 711, 1184
EcoT22I ATGCAT 1 cut(s) 1123
EcoT38I GRGCYC 2 cut(s) 366, 912
ErhI CCWWGG 6 cut(s) 154, 177, 225, 428, 711, 1184
FaeI CATG 7 cut(s) 158, 181, 238, 432, 684, 917, 1188
FalI AAGNNNNNCTT 2 cut(s) 1142, 1174
FaqI GGGAC 2 cut(s) 455, 1118
FatI CATG 7 cut(s) 154, 177, 234, 428, 680, 913, 1184
FauI CCCGC 4 cut(s) 153, 258, 851, 988
FauNDI CATATG 2 cut(s) 451, 613
FbaI TGATCA 1 cut(s) 916
FblI GTMKAC 1 cut(s) 600
Fnu4HI GCNGC 1 cut(s) 1212
FokI GGATG 3 cut(s) 445, 911, 986
FriOI GRGCYC 2 cut(s) 366, 912
Fsp4HI GCNGC 1 cut(s) 1212
FspBI CTAG 2 cut(s) 170, 215
GluI GCNGC 1 cut(s) 1212
HaeIII GGCC 4 cut(s) 144, 610, 954, 1066
HapII CCGG 2 cut(s) 768, 1019
HgaI GACGC 1 cut(s) 1118
Hin1II CATG 7 cut(s) 158, 181, 238, 432, 684, 917, 1188
HincII GTYRAC 2 cut(s) 409, 864
HindII GTYRAC 2 cut(s) 409, 864
HindIII AAGCTT 1 cut(s) 1156
HinfI GANTC 7 cut(s) 344, 771, 852, 883, 999, 1007, 1058
HpaII CCGG 2 cut(s) 768, 1019
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 4 cut(s) 409, 601, 864, 979
Hpy188I TCNGA 6 cut(s) 27, 422, 477, 703, 882, 1116
Hpy188III TCNNGA 7 cut(s) 215, 494, 539, 620, 727, 768, 832
Hpy8I GTNNAC 4 cut(s) 409, 601, 864, 979
HpyAV CCTTC 5 cut(s) 106, 199, 253, 708, 1144
HpyCH4III ACNGT 3 cut(s) 198, 413, 1246
HpyCH4IV ACGT 2 cut(s) 97, 1039
HpyCH4V TGCA 5 cut(s) 293, 394, 436, 749, 1121
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 907, 1118
HpyF3I CTNAG 7 cut(s) 63, 318, 371, 511, 702, 969, 1011
HpySE526I ACGT 2 cut(s) 97, 1039
Hsp92II CATG 7 cut(s) 158, 181, 238, 432, 684, 917, 1188
KflI GGGWCCC 1 cut(s) 1132
Kpn2I TCCGGA 1 cut(s) 767
Ksp22I TGATCA 1 cut(s) 916
KspI CCGCGG 1 cut(s) 859
Kzo9I GATC 5 cut(s) 184, 477, 616, 916, 1099
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 2 cut(s) 369, 915
LweI GCATC 1 cut(s) 423
MaeI CTAG 2 cut(s) 170, 215
MaeII ACGT 2 cut(s) 97, 1039
MaeIII GTNAC 3 cut(s) 98, 1093, 1106
MalI GATC 5 cut(s) 186, 479, 618, 918, 1101
MboI GATC 5 cut(s) 184, 477, 616, 916, 1099
MboII GAAGA 6 cut(s) 194, 323, 478, 604, 640, 643
MflI RGATCY 1 cut(s) 477
MhlI GDGCHC 4 cut(s) 366, 912, 1230, 1253
MluCI AATT 6 cut(s) 300, 755, 815, 837, 870, 1048
MlyI GAGTC 3 cut(s) 780, 1001, 1052
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 6 cut(s) 72, 135, 232, 366, 546, 686
Mph1103I ATGCAT 1 cut(s) 1123
MroI TCCGGA 1 cut(s) 767
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 2 cut(s) 734, 990
MslI CAYNNNNRTG 2 cut(s) 156, 933
MspA1I CMGCKG 1 cut(s) 858
MspI CCGG 2 cut(s) 768, 1019
MspR9I CCNGG 2 cut(s) 956, 1138
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 2 cut(s) 956, 1138
MvnI CGCG 1 cut(s) 858
MwoI GCNNNNNNNGC 3 cut(s) 290, 907, 1118
NcoI CCATGG 4 cut(s) 154, 177, 428, 1184
NdeI CATATG 2 cut(s) 451, 613
NdeII GATC 5 cut(s) 184, 477, 616, 916, 1099
NlaIII CATG 7 cut(s) 158, 181, 238, 432, 684, 917, 1188
NlaIV GGNNCC 6 cut(s) 84, 378, 830, 1065, 1133, 1134
NmuCI GTSAC 1 cut(s) 1106
NsiI ATGCAT 1 cut(s) 1123
NspI RCATGY 1 cut(s) 684
OliI CACNNNNGTG 1 cut(s) 156
PaeR7I CTCGAG 1 cut(s) 638
PciI ACATGT 1 cut(s) 680
PciSI GCTCTTC 1 cut(s) 587
PctI GAATGC 1 cut(s) 1123
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 4 cut(s) 344, 852, 883, 999
PflMI CCANNNNNTGG 1 cut(s) 1190
PkrI GCNGC 1 cut(s) 1213
PleI GAGTC 3 cut(s) 779, 1001, 1052
PpsI GAGTC 3 cut(s) 779, 1001, 1052
Ppu21I YACGTR 1 cut(s) 98
PpuMI RGGWCCY 2 cut(s) 829, 1132
PscI ACATGT 1 cut(s) 680
Psp124BI GAGCTC 2 cut(s) 366, 912
Psp5II RGGWCCY 2 cut(s) 829, 1132
Psp6I CCWGG 2 cut(s) 954, 1136
PspGI CCWGG 2 cut(s) 954, 1136
PspN4I GGNNCC 6 cut(s) 84, 378, 830, 1065, 1133, 1134
PspPI GGNCC 5 cut(s) 143, 222, 829, 1064, 1132
PspPPI RGGWCCY 2 cut(s) 829, 1132
PspXI VCTCGAGB 1 cut(s) 638
PsuI RGATCY 1 cut(s) 477
RsaI GTAC 1 cut(s) 1180
RsaNI GTAC 1 cut(s) 1179
RseI CAYNNNNRTG 2 cut(s) 156, 933
SacI GAGCTC 2 cut(s) 366, 912
SacII CCGCGG 1 cut(s) 859
SapI GCTCTTC 1 cut(s) 587
SaqAI TTAA 2 cut(s) 734, 990
SatI GCNGC 1 cut(s) 1212
Sau3AI GATC 5 cut(s) 184, 477, 616, 916, 1099
Sau96I GGNCC 5 cut(s) 143, 222, 829, 1064, 1132
ScaI AGTACT 1 cut(s) 1180
SchI GAGTC 3 cut(s) 780, 1001, 1052
ScrFI CCNGG 2 cut(s) 956, 1138
SduI GDGCHC 4 cut(s) 366, 912, 1230, 1253
SfaNI GCATC 1 cut(s) 423
SfcI CTRYAG 3 cut(s) 11, 76, 1126
Sfr274I CTCGAG 1 cut(s) 638
Sfr303I CCGCGG 1 cut(s) 859
SgrBI CCGCGG 1 cut(s) 859
SinI GGWCC 3 cut(s) 222, 829, 1132
SlaI CTCGAG 1 cut(s) 638
SmiMI CAYNNNNRTG 2 cut(s) 156, 933
SmlI CTYRAG 5 cut(s) 126, 494, 638, 725, 847
SmoI CTYRAG 5 cut(s) 126, 494, 638, 725, 847
SnaBI TACGTA 1 cut(s) 98
Sse9I AATT 6 cut(s) 300, 755, 815, 837, 870, 1048
SsiI CCGC 7 cut(s) 146, 265, 716, 856, 858, 995, 1211
SspMI CTAG 2 cut(s) 170, 215
SstI GAGCTC 2 cut(s) 366, 912
StyD4I CCNGG 2 cut(s) 954, 1136
StyI CCWWGG 6 cut(s) 154, 177, 225, 428, 711, 1184
TaaI ACNGT 3 cut(s) 198, 413, 1246
TaiI ACGT 2 cut(s) 100, 1042
TaqI TCGA 3 cut(s) 619, 639, 688
TasI AATT 6 cut(s) 300, 755, 815, 837, 870, 1048
TatI WGTACW 1 cut(s) 1178
TauI GCSGC 1 cut(s) 1214
TfiI GAWTC 4 cut(s) 344, 852, 883, 999
Tru1I TTAA 2 cut(s) 734, 990
Tru9I TTAA 2 cut(s) 734, 990
TscAI CASTG 4 cut(s) 71, 396, 908, 1251
TseFI GTSAC 1 cut(s) 1106
Tsp45I GTSAC 1 cut(s) 1106
TspDTI ATGAA 4 cut(s) 343, 478, 641, 931
TspGWI ACGGA 2 cut(s) 235, 269
TspRI CASTG 4 cut(s) 71, 396, 908, 1251
Van91I CCANNNNNTGG 1 cut(s) 1190
VpaK11BI GGWCC 3 cut(s) 222, 829, 1132
XapI RAATTY 3 cut(s) 815, 837, 870
XbaI TCTAGA 1 cut(s) 214
XceI RCATGY 1 cut(s) 684
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XhoI CTCGAG 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 600
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 2 cut(s) 170, 215
ZrmI AGTACT 1 cut(s) 1180
Zsp2I ATGCAT 1 cut(s) 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.