FvH4_2g29351

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000131
Physical Location & Seq
Reverse (-)
22783292 .. 22784251
960 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29351.t1

Sequence Viewer

Length: 843 bp
ATGAGCAACAACGATGGAGCTGCTCCAAATGACACAGAAAATGCGTCCATTCCATTAGAAACTTCAATAAGAGAGAAGCTGCAAAAGTTGCCTCCTCTGTCTCCGTCATGTTTTATTTACAGAGTTCCAGAGAGGTTTAGGCTTCGAGATAATCCAAATGTCTACACACCTCAAGTAGTCTCTATAGGTCCATTACACCGTGGCAAGGAAACATTACAAGACATGGAAGAGCACAAATACAGTAATGACTTCGTAACTATCATGCTTGTGGATGCTGCATTCATCATTGAGCTCTTTTTGAACCACTATTTCAACATAGCTAATAGCACAGACCGGATAATGAGCGCACCATTTCTGATAAATGACATCAGTTCTGATTTGCTTTTGCTTGAAAATCAACTTCCATTTTTCATTCTTGAGGATCTTTTCTATCTTGAAGAAGTTAACAGAAATTCAAATTCTGGTGTGAATGGGAAGGTGTCATTTATTCAACTTTTTGGCAAATTCTTTGAACAAGAATTAGGCGCAGTTGGAGCGGACTGCAATTCGGAGATGGTAAATTTTTGTGAAGTACGAGGAGCACATTTTCTTGATTTGCCACGGGAACCTCTAGTTCGATGCACACGCAATGAGGGCACCCCTATAGCACCAAGCATCACAGAGCTACACCAAGCTGGAGTCAAGTTTGAAGTGGGATCAACCAGACACTTATTTGGCATACGATTTAATAATGGAATTCTGCAAATCCCAAAAATTGAAATTTCTGGTTGTATGGTGGATACATTGAGAAATATTGCTGTGTTTGAACAATGTCATTACTTGAATAGCAGGATAACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

281

Amino Acids

31.72

Weight (kDa)

5.06

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 39 - 80 6.1e-13 Plant protein of unknown function
DUF247 PF03140 81 - 273 6.3e-38 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 635
AccBSI CCGCTC 1 cut(s) 536
AccI GTMKAC 1 cut(s) 162
AciI CCGC 1 cut(s) 536
AclWI GGATC 2 cut(s) 429, 703
AcsI RAATTY 6 cut(s) 451, 457, 503, 559, 735, 759
AfaI GTAC 1 cut(s) 573
AfiI CCNNNNNNNGG 1 cut(s) 205
AluBI AGCT 6 cut(s) 20, 79, 292, 320, 664, 674
AluI AGCT 6 cut(s) 20, 79, 292, 320, 664, 674
Alw21I GWGCWC 3 cut(s) 234, 294, 583
Alw26I GTCTC 2 cut(s) 105, 184
AlwI GGATC 2 cut(s) 429, 703
ApeKI GCWGC 3 cut(s) 20, 79, 275
ApoI RAATTY 6 cut(s) 451, 457, 503, 559, 735, 759
AspLEI GCGC 2 cut(s) 347, 527
AspS9I GGNCC 1 cut(s) 188
AvaII GGWCC 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 638
BanI GGYRCC 1 cut(s) 635
BanII GRGCYC 1 cut(s) 294
Bbv12I GWGCWC 3 cut(s) 234, 294, 583
BbvI GCAGC 3 cut(s) 7, 66, 262
BccI CCATC 2 cut(s) 8, 547
BcgI CGANNNNNNTGC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 772
BcoDI GTCTC 2 cut(s) 105, 184
BfaI CTAG 1 cut(s) 611
BfmI CTRYAG 2 cut(s) 183, 642
BfuI GTATCC 1 cut(s) 772
BisI GCNGC 3 cut(s) 21, 80, 276
BlsI GCNGC 3 cut(s) 22, 81, 277
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 606, 637
BmsI GCATC 3 cut(s) 262, 608, 663
BpmI CTGGAG 1 cut(s) 696
BpuEI CTTGAG 2 cut(s) 156, 437
BsaJI CCNNGG 2 cut(s) 199, 599
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 634
BseDI CCNNGG 2 cut(s) 199, 599
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 634
BseRI GAGGAG 2 cut(s) 84, 591
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 3 cut(s) 7, 66, 262
BshNI GGYRCC 1 cut(s) 635
BsiHKAI GWGCWC 3 cut(s) 234, 294, 583
BsiSI CCGG 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 2 cut(s) 105, 184
BsmI GAATGC 1 cut(s) 278
Bsp1286I GDGCHC 4 cut(s) 234, 294, 583, 638
Bsp143I GATC 2 cut(s) 421, 695
BspACI CCGC 1 cut(s) 536
BspLI GGNNCC 2 cut(s) 606, 637
BspPI GGATC 2 cut(s) 429, 703
BspQI GCTCTTC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 634
BssECI CCNNGG 2 cut(s) 199, 599
BssMI GATC 2 cut(s) 421, 695
Bst4CI ACNGT 2 cut(s) 200, 242
Bst6I CTCTTC 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 88
BstDSI CCRYGG 2 cut(s) 199, 599
BstF5I GGATG 1 cut(s) 277
BstHHI GCGC 2 cut(s) 347, 527
BstKTI GATC 2 cut(s) 424, 698
BstMAI GTCTC 2 cut(s) 105, 184
BstMBI GATC 2 cut(s) 421, 695
BstMWI GCNNNNNNNGC 3 cut(s) 88, 533, 633
BstSFI CTRYAG 2 cut(s) 183, 642
BstSLI GKGCMC 1 cut(s) 638
BstV1I GCAGC 3 cut(s) 7, 66, 262
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuI GTATCC 1 cut(s) 772
BtgI CCRYGG 2 cut(s) 199, 599
BtsCI GGATG 1 cut(s) 277
CfoI GCGC 2 cut(s) 347, 527
Cfr13I GGNCC 1 cut(s) 188
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 572
CviAII CATG 3 cut(s) 108, 223, 262
CviJI RGCY 7 cut(s) 20, 79, 142, 292, 320, 664, 674
CviKI_1 RGCY 7 cut(s) 20, 79, 142, 292, 320, 664, 674
CviQI GTAC 1 cut(s) 572
DpnI GATC 2 cut(s) 423, 697
DpnII GATC 2 cut(s) 421, 695
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 292
EcoRI GAATTC 1 cut(s) 735
EcoT38I GRGCYC 1 cut(s) 294
FaeI CATG 3 cut(s) 111, 226, 265
FaiI YATR 8 cut(s) 109, 185, 224, 263, 317, 644, 719, 773
FatI CATG 3 cut(s) 107, 222, 261
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 3 cut(s) 21, 80, 276
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 3 cut(s) 21, 80, 276
FspBI CTAG 1 cut(s) 611
GlaI GCGC 2 cut(s) 346, 526
GluI GCNGC 3 cut(s) 21, 80, 276
GsuI CTGGAG 1 cut(s) 696
HapII CCGG 1 cut(s) 334
HgaI GACGC 1 cut(s) 33
HhaI GCGC 2 cut(s) 347, 527
Hin1II CATG 3 cut(s) 111, 226, 265
Hin6I GCGC 2 cut(s) 345, 525
HinP1I GCGC 2 cut(s) 345, 525
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HinfI GANTC 1 cut(s) 678
HpaI GTTAAC 1 cut(s) 445
HpaII CCGG 1 cut(s) 334
Hpy166II GTNNAC 2 cut(s) 163, 445
Hpy188I TCNGA 3 cut(s) 357, 376, 550
Hpy188III TCNNGA 5 cut(s) 128, 146, 416, 434, 590
Hpy8I GTNNAC 2 cut(s) 163, 445
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 2 cut(s) 200, 242
HpyCH4V TGCA 5 cut(s) 82, 278, 543, 621, 742
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 533, 633
Hsp92II CATG 3 cut(s) 111, 226, 265
HspAI GCGC 2 cut(s) 345, 525
KspAI GTTAAC 1 cut(s) 445
Kzo9I GATC 2 cut(s) 421, 695
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 4 cut(s) 17, 28, 533, 578
LpnPI CCDG 7 cut(s) 141, 347, 447, 660, 715, 750, 814
Lsp1109I GCAGC 3 cut(s) 7, 66, 262
LweI GCATC 3 cut(s) 262, 608, 663
MaeI CTAG 1 cut(s) 611
MaeIII GTNAC 1 cut(s) 253
MalI GATC 2 cut(s) 423, 697
MbiI CCGCTC 1 cut(s) 536
MboI GATC 2 cut(s) 421, 695
MboII GAAGA 2 cut(s) 239, 449
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 4 cut(s) 234, 294, 583, 638
MluCI AATT 9 cut(s) 451, 457, 503, 518, 544, 559, 735, 753, 759
MlyI GAGTC 1 cut(s) 687
MmeI TCCRAC 1 cut(s) 511
MnlI CCTC 8 cut(s) 102, 105, 126, 180, 412, 569, 618, 625
MseI TTAA 3 cut(s) 444, 726, 841
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 1 cut(s) 334
Mva1269I GAATGC 1 cut(s) 278
MwoI GCNNNNNNNGC 3 cut(s) 88, 533, 633
NdeII GATC 2 cut(s) 421, 695
NlaIII CATG 3 cut(s) 111, 226, 265
NlaIV GGNNCC 2 cut(s) 606, 637
PciSI GCTCTTC 1 cut(s) 222
PctI GAATGC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 22, 81, 277
PleI GAGTC 1 cut(s) 686
PpsI GAGTC 1 cut(s) 686
Psp124BI GAGCTC 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 606, 637
PspPI GGNCC 1 cut(s) 188
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 1 cut(s) 573
RsaNI GTAC 1 cut(s) 572
RseI CAYNNNNRTG 1 cut(s) 266
SacI GAGCTC 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 444, 726, 841
SatI GCNGC 3 cut(s) 21, 80, 276
Sau3AI GATC 2 cut(s) 421, 695
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 687
SduI GDGCHC 4 cut(s) 234, 294, 583, 638
SfaNI GCATC 3 cut(s) 262, 608, 663
SfcI CTRYAG 2 cut(s) 183, 642
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 2 cut(s) 171, 416
SmoI CTYRAG 2 cut(s) 171, 416
Sse9I AATT 9 cut(s) 451, 457, 503, 518, 544, 559, 735, 753, 759
SsiI CCGC 1 cut(s) 536
SspI AATATT 1 cut(s) 793
SspMI CTAG 1 cut(s) 611
SstI GAGCTC 1 cut(s) 294
TaaI ACNGT 2 cut(s) 200, 242
TaqI TCGA 2 cut(s) 145, 616
TasI AATT 9 cut(s) 451, 457, 503, 518, 544, 559, 735, 753, 759
Tru1I TTAA 3 cut(s) 444, 726, 841
Tru9I TTAA 3 cut(s) 444, 726, 841
TseI GCWGC 3 cut(s) 20, 79, 275
TspDTI ATGAA 2 cut(s) 271, 400
TspGWI ACGGA 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 6 cut(s) 451, 457, 503, 559, 735, 759
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.