MD15G1100700.v1.1

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000131
Physical Location & Seq
Forward (+)
6997535 .. 6998771
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1100700.v1.1.491

Sequence Viewer

Length: 810 bp
ATGTTGTGGGATGTGCGTCCAGACTTGCGGTTGATTGAAAATCAGCTGCCATTCTTCATTCTTCAGGATCTTTTCAGATTTTTTTCTTCTTCTTCTCTTTCGTTACTTGATATTTCCCACAAATTTTTCAAAGGCGAAATTGATAGCAAGGGAAAAGAAGAGAATTTTAAAAATATTTCTAATGGAGATGTACAACATTTTGTTGATCTGATAAGAATTCTATACGGACAGTTGAAATCAAAAACTAGAGCTAACATCACAGTCACAGACACACCCAACGTGACAGAGCTACACCAGGCTGGAGTCAAGTTTAAGGAAGGAAAAGGCAGCAGCTTATTTGACATAAAATTCTCGCATGGGATCCTCGAAATTCCAAAGTTAACAGTGGACGATACCACAGAGCTGACACTCAGAAATCTCCTTGCTTTTGAACAATGCCATCGCAGAGAGGAGGATTACCTAGCTAATTATGTTTTCCTTATGAAGCGTCTCGTGAAAACCCCTGAGGATGTGCAATTGCTTGTTGATAAGGAAATCATTGATAATTGGCTAGGTGATACCCATAAGATATCTACTTTGCTTCATGACCTTGGCACCGGGATGATGGTTGACCACCACTACTATGCCCCTCTTTGTAAAGAGCTGAAAGATTACCGCGAAAAGCTCTGGCACGGATGGATGGTAATTTTGAAAACAAAATTATTTTTAACACGCCTTGGGCCAGTATTTCTGTTGTTGCTGCTGTTATTCTCCTCATACTCACTGTCATACAAACAGCGTGCTCTTACAAATCTGTCCCGCTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

270

Amino Acids

31.39

Weight (kDa)

7.79

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 4 - 235 4.1e-64 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 593
AccBSI CCGCTC 1 cut(s) 801
AccII CGCG 1 cut(s) 657
AciI CCGC 3 cut(s) 28, 655, 799
AclWI GGATC 3 cut(s) 75, 355, 368
AcsI RAATTY 5 cut(s) 122, 163, 216, 347, 369
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 1 cut(s) 192
AgsI TTSAA 5 cut(s) 38, 130, 235, 431, 691
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 8 cut(s) 46, 251, 289, 333, 403, 464, 643, 664
AluI AGCT 8 cut(s) 46, 251, 289, 333, 403, 464, 643, 664
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 3 cut(s) 75, 355, 368
AoxI GGCC 1 cut(s) 719
ApeKI GCWGC 4 cut(s) 46, 327, 330, 739
ApoI RAATTY 5 cut(s) 122, 163, 216, 347, 369
AspS9I GGNCC 1 cut(s) 719
AsuC2I CCSGG 1 cut(s) 598
AsuHPI GGTGA 1 cut(s) 566
AxyI CCTNAGG 1 cut(s) 504
BamHI GGATCC 1 cut(s) 360
BanI GGYRCC 1 cut(s) 593
BauI CACGAG 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 784
BbvI GCAGC 4 cut(s) 33, 339, 342, 726
BccI CCATC 4 cut(s) 447, 598, 669, 673
BciT130I CCWGG 1 cut(s) 296
BcnI CCSGG 1 cut(s) 598
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 3 cut(s) 246, 461, 551
BisI GCNGC 4 cut(s) 47, 328, 331, 740
BlsI GCNGC 4 cut(s) 48, 329, 332, 741
Bme1390I CCNGG 2 cut(s) 296, 598
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 2 cut(s) 362, 595
BmrFI CCNGG 2 cut(s) 296, 598
BpmI CTGGAG 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 598
BsaJI CCNNGG 2 cut(s) 589, 715
Bse1I ACTGG 1 cut(s) 722
Bse21I CCTNAGG 1 cut(s) 504
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 589, 715
BseGI GGATG 5 cut(s) 16, 514, 606, 680, 684
BseMII CTCAG 2 cut(s) 424, 495
BseNI ACTGG 1 cut(s) 722
BseRI GAGGAG 2 cut(s) 464, 742
BseXI GCAGC 4 cut(s) 33, 339, 342, 726
Bsh1236I CGCG 1 cut(s) 657
BshFI GGCC 1 cut(s) 721
BshNI GGYRCC 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 784
BsiSI CCGG 1 cut(s) 597
BslFI GGGAC 1 cut(s) 781
BsmAI GTCTC 1 cut(s) 494
BsmBI CGTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 781
BsnI GGCC 1 cut(s) 721
Bsp1286I GDGCHC 1 cut(s) 784
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 3 cut(s) 67, 205, 360
BspACI CCGC 3 cut(s) 28, 655, 799
BspANI GGCC 1 cut(s) 721
BspCNI CTCAG 2 cut(s) 423, 496
BspFNI CGCG 1 cut(s) 657
BspHI TCATGA 1 cut(s) 583
BspLI GGNNCC 2 cut(s) 362, 595
BspPI GGATC 3 cut(s) 75, 355, 368
BspT107I GGYRCC 1 cut(s) 593
BsrBI CCGCTC 1 cut(s) 801
BsrGI TGTACA 1 cut(s) 190
BsrI ACTGG 1 cut(s) 722
BssECI CCNNGG 2 cut(s) 589, 715
BssMI GATC 3 cut(s) 67, 205, 360
BssSI CACGAG 1 cut(s) 491
BssT1I CCWWGG 2 cut(s) 589, 715
Bst2BI CACGAG 1 cut(s) 491
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 4 cut(s) 231, 262, 385, 765
Bst6I CTCTTC 1 cut(s) 153
BstAUI TGTACA 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 780
BstDEI CTNAG 2 cut(s) 410, 504
BstF5I GGATG 5 cut(s) 16, 514, 606, 680, 684
BstFNI CGCG 1 cut(s) 657
BstKTI GATC 3 cut(s) 70, 208, 363
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 3 cut(s) 67, 205, 360
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 294, 596
BstUI CGCG 1 cut(s) 657
BstV1I GCAGC 4 cut(s) 33, 339, 342, 726
BstX2I RGATCY 2 cut(s) 67, 360
BstYI RGATCY 2 cut(s) 67, 360
Bsu36I CCTNAGG 1 cut(s) 504
BsuRI GGCC 1 cut(s) 721
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 5 cut(s) 16, 514, 606, 680, 684
BtsIMutI CAGTG 2 cut(s) 390, 761
Cac8I GCNNGC 1 cut(s) 780
CciI TCATGA 1 cut(s) 583
Cfr13I GGNCC 1 cut(s) 719
CseI GACGC 2 cut(s) 5, 476
Csp6I GTAC 1 cut(s) 191
CviAII CATG 2 cut(s) 356, 584
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 2 cut(s) 410, 504
DpnI GATC 3 cut(s) 69, 207, 362
DpnII GATC 3 cut(s) 67, 205, 360
DraI TTTAAA 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 589, 715
Eco32I GATATC 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 47
Eco81I CCTNAGG 1 cut(s) 504
EcoRI GAATTC 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 294
EcoRV GATATC 1 cut(s) 570
EcoT14I CCWWGG 2 cut(s) 589, 715
ErhI CCWWGG 2 cut(s) 589, 715
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 2 cut(s) 359, 587
FaqI GGGAC 1 cut(s) 781
FatI CATG 2 cut(s) 355, 583
FauI CCCGC 1 cut(s) 806
Fnu4HI GCNGC 4 cut(s) 47, 328, 331, 740
FokI GGATG 5 cut(s) 23, 521, 613, 687, 691
Fsp4HI GCNGC 4 cut(s) 47, 328, 331, 740
FspBI CTAG 3 cut(s) 246, 461, 551
GluI GCNGC 4 cut(s) 47, 328, 331, 740
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 1 cut(s) 721
HapII CCGG 1 cut(s) 597
HgaI GACGC 2 cut(s) 5, 476
Hin1II CATG 2 cut(s) 359, 587
HincII GTYRAC 2 cut(s) 381, 610
HindII GTYRAC 2 cut(s) 381, 610
HinfI GANTC 1 cut(s) 303
HpaI GTTAAC 1 cut(s) 381
HpaII CCGG 1 cut(s) 597
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 3 cut(s) 381, 388, 610
Hpy188I TCNGA 3 cut(s) 77, 210, 413
Hpy188III TCNNGA 4 cut(s) 20, 65, 493, 584
Hpy8I GTNNAC 3 cut(s) 381, 388, 610
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 4 cut(s) 231, 262, 385, 765
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 514
HpyF3I CTNAG 2 cut(s) 410, 504
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 2 cut(s) 359, 587
KspAI GTTAAC 1 cut(s) 381
Kzo9I GATC 3 cut(s) 67, 205, 360
LpnPI CCDG 9 cut(s) 33, 50, 281, 285, 308, 516, 610, 652, 735
Lsp1109I GCAGC 4 cut(s) 33, 339, 342, 726
MaeI CTAG 3 cut(s) 246, 461, 551
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 3 cut(s) 102, 262, 280
MalI GATC 3 cut(s) 69, 207, 362
MbiI CCGCTC 1 cut(s) 801
MboI GATC 3 cut(s) 67, 205, 360
MboII GAAGA 6 cut(s) 46, 53, 78, 81, 84, 170
MfeI CAATTG 1 cut(s) 515
MflI RGATCY 2 cut(s) 67, 360
MhlI GDGCHC 1 cut(s) 784
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 6 cut(s) 374, 442, 445, 499, 639, 763
MseI TTAA 5 cut(s) 168, 312, 380, 707, 808
MslI CAYNNNNRTG 2 cut(s) 599, 621
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 597
MspR9I CCNGG 2 cut(s) 296, 598
MunI CAATTG 1 cut(s) 515
MvaI CCWGG 1 cut(s) 296
MvnI CGCG 1 cut(s) 657
NciI CCSGG 1 cut(s) 598
NdeII GATC 3 cut(s) 67, 205, 360
NlaIII CATG 2 cut(s) 359, 587
NlaIV GGNNCC 2 cut(s) 362, 595
NmuCI GTSAC 2 cut(s) 262, 280
PagI TCATGA 1 cut(s) 583
PkrI GCNGC 4 cut(s) 48, 329, 332, 741
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 362, 595
PspPI GGNCC 1 cut(s) 719
PsuI RGATCY 2 cut(s) 67, 360
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
RseI CAYNNNNRTG 2 cut(s) 599, 621
SaqAI TTAA 5 cut(s) 168, 312, 380, 707, 808
SatI GCNGC 4 cut(s) 47, 328, 331, 740
Sau3AI GATC 3 cut(s) 67, 205, 360
Sau96I GGNCC 1 cut(s) 719
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 2 cut(s) 296, 598
SduI GDGCHC 1 cut(s) 784
SmiMI CAYNNNNRTG 2 cut(s) 599, 621
SsiI CCGC 3 cut(s) 28, 655, 799
SspI AATATT 1 cut(s) 175
SspMI CTAG 3 cut(s) 246, 461, 551
StyD4I CCNGG 2 cut(s) 294, 596
StyI CCWWGG 2 cut(s) 589, 715
TaaI ACNGT 4 cut(s) 231, 262, 385, 765
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 366
TatI WGTACW 1 cut(s) 190
Tru1I TTAA 5 cut(s) 168, 312, 380, 707, 808
Tru9I TTAA 5 cut(s) 168, 312, 380, 707, 808
TscAI CASTG 2 cut(s) 390, 768
TseFI GTSAC 2 cut(s) 262, 280
TseI GCWGC 4 cut(s) 46, 327, 330, 739
Tsp45I GTSAC 2 cut(s) 262, 280
TspDTI ATGAA 3 cut(s) 46, 497, 572
TspGWI ACGGA 2 cut(s) 240, 687
TspRI CASTG 2 cut(s) 390, 768
XapI RAATTY 5 cut(s) 122, 163, 216, 347, 369
XspI CTAG 3 cut(s) 246, 461, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.