Rh4CG170100

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000131
Physical Location & Seq
Reverse (-)
37147616 .. 37148236
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG170100.1

Sequence Viewer

Length: 621 bp
ATGTGGGTGAATGATGTATGGCCTGACCTGGTAAGGCTTGAAAATCAGCTTCCATTCTTCATTCTTGAGGACCTATTCGACCCAGACATATTTCCGGTCCCTCCACAGTACTCTAACAGGCTTAATGGTGTTGAGAGGCTTTCAATATTGTTTCTTTCTCACCATTTTGTAAATGATATCGCGAAAGATATAGGGGGGCTGCTGGATAATGTGGAGATGGTTTATTCTTCCGAAGAGATAGACCATTTTGCTGATCTCTTAAGAAAGCTATATATAGCACCTATCAATAGAGAATCTGTAGAAACGAAAATTTATACAGCACCTACCATTGAAGAGCTAAACCGGGCGGGAGTGAAATTTAAGGTTGGACTAACCAAGAATTTATTTGACATACAGTTTGATGATGGAATTCTGAAAATTCCAAAATTCATAGCACATGATGGTACAGAGTTTGTACTAAAAAATCTAGTTGCTTTTGAGCAATGCGATACTGGCAAAGGAAATTACCTATCTGATTATGTCATTCTTATGGATCAACTTGTGGACACCTCAAAAGATGCGGAGTTGCTCGTTAAGTATAAAATCATTGTAAACAATAAACATGCTAGGAGGTGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

206

Amino Acids

23.85

Weight (kDa)

4.9

Isoelectric Point (pI)

29.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 4 - 199 3.6e-42 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 182
AciI CCGC 2 cut(s) 347, 560
AclWI GGATC 1 cut(s) 540
AcsI RAATTY 6 cut(s) 309, 356, 379, 408, 417, 425
AfaI GTAC 3 cut(s) 110, 445, 456
AflII CTTAAG 1 cut(s) 259
AgsI TTSAA 3 cut(s) 41, 144, 332
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 3 cut(s) 49, 268, 337
AluI AGCT 3 cut(s) 49, 268, 337
AlwI GGATC 1 cut(s) 540
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 6 cut(s) 309, 356, 379, 408, 417, 425
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
AspS9I GGNCC 2 cut(s) 70, 97
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 2 cut(s) 19, 152
AvaII GGWCC 2 cut(s) 70, 97
BbvI GCAGC 1 cut(s) 186
BccI CCATC 3 cut(s) 211, 398, 434
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 1 cut(s) 344
BfaI CTAG 2 cut(s) 467, 606
BfmI CTRYAG 1 cut(s) 297
BfrI CTTAAG 1 cut(s) 259
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BmcAI AGTACT 1 cut(s) 110
Bme1390I CCNGG 2 cut(s) 29, 344
Bme18I GGWCC 2 cut(s) 70, 97
BmgT120I GGNCC 2 cut(s) 70, 97
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 2 cut(s) 29, 344
BmsI GCATC 1 cut(s) 547
BpuEI CTTGAG 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 344
BsaWI WCCGGW 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 496
Bse3DI GCAATG 1 cut(s) 488
BseBI CCWGG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 488
BseNI ACTGG 1 cut(s) 496
BseXI GCAGC 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 1 cut(s) 22
BsiSI CCGG 2 cut(s) 95, 343
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 253, 532
Bsp68I TCGCGA 1 cut(s) 182
BspACI CCGC 2 cut(s) 347, 560
BspANI GGCC 1 cut(s) 22
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 1 cut(s) 540
BspQI GCTCTTC 1 cut(s) 327
BspTI CTTAAG 1 cut(s) 259
BsrDI GCAATG 1 cut(s) 488
BsrI ACTGG 1 cut(s) 496
BssMI GATC 2 cut(s) 253, 532
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 108, 396
Bst6I CTCTTC 2 cut(s) 228, 327
BstAFI CTTAAG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 182
BstKTI GATC 2 cut(s) 256, 535
BstMBI GATC 2 cut(s) 253, 532
BstMWI GCNNNNNNNGC 1 cut(s) 492
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 2 cut(s) 27, 342
BstSFI CTRYAG 1 cut(s) 297
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 22
BtuMI TCGCGA 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 70, 97
CsiI ACCWGGT 1 cut(s) 27
Csp6I GTAC 3 cut(s) 109, 444, 455
CviAII CATG 2 cut(s) 437, 602
CviJI RGCY 8 cut(s) 22, 37, 49, 121, 139, 199, 268, 337
CviKI_1 RGCY 8 cut(s) 22, 37, 49, 121, 139, 199, 268, 337
CviQI GTAC 3 cut(s) 109, 444, 455
DpnI GATC 2 cut(s) 255, 534
DpnII GATC 2 cut(s) 253, 532
Eam1104I CTCTTC 2 cut(s) 228, 327
EarI CTCTTC 2 cut(s) 228, 327
Eco32I GATATC 1 cut(s) 178
Eco47I GGWCC 2 cut(s) 70, 97
EcoO109I RGGNCCY 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 1 cut(s) 178
FaeI CATG 2 cut(s) 440, 605
FaqI GGGAC 1 cut(s) 83
FatI CATG 2 cut(s) 436, 601
FauI CCCGC 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 2 cut(s) 467, 606
GluI GCNGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 22
HapII CCGG 2 cut(s) 95, 343
Hin1II CATG 2 cut(s) 440, 605
HinfI GANTC 1 cut(s) 293
HpaII CCGG 2 cut(s) 95, 343
HphI GGTGA 2 cut(s) 19, 152
Hpy166II GTNNAC 2 cut(s) 544, 592
Hpy188I TCNGA 3 cut(s) 232, 414, 514
Hpy188III TCNNGA 2 cut(s) 65, 181
Hpy8I GTNNAC 2 cut(s) 544, 592
HpyCH4III ACNGT 2 cut(s) 108, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 492
Hsp92II CATG 2 cut(s) 440, 605
Kzo9I GATC 2 cut(s) 253, 532
LguI GCTCTTC 1 cut(s) 327
LpnPI CCDG 9 cut(s) 14, 36, 41, 96, 103, 108, 188, 356, 477
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 1 cut(s) 547
MabI ACCWGGT 1 cut(s) 27
MaeI CTAG 2 cut(s) 467, 606
MalI GATC 2 cut(s) 255, 534
MboI GATC 2 cut(s) 253, 532
MboII GAAGA 4 cut(s) 49, 219, 245, 344
MluCI AATT 7 cut(s) 309, 356, 379, 408, 417, 425, 502
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 5 cut(s) 61, 111, 129, 559, 603
MseI TTAA 4 cut(s) 123, 260, 360, 573
MslI CAYNNNNRTG 1 cut(s) 527
MspCI CTTAAG 1 cut(s) 259
MspI CCGG 2 cut(s) 95, 343
MspR9I CCNGG 2 cut(s) 29, 344
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 492
NciI CCSGG 1 cut(s) 344
NdeII GATC 2 cut(s) 253, 532
NlaIII CATG 2 cut(s) 440, 605
NlaIV GGNNCC 1 cut(s) 99
NruI TCGCGA 1 cut(s) 182
NspI RCATGY 1 cut(s) 605
PciSI GCTCTTC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 201
PpuMI RGGWCCY 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 2 cut(s) 70, 97
PspPPI RGGWCCY 1 cut(s) 70
RruI TCGCGA 1 cut(s) 182
RsaI GTAC 3 cut(s) 110, 445, 456
RsaNI GTAC 3 cut(s) 109, 444, 455
RseI CAYNNNNRTG 1 cut(s) 527
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 4 cut(s) 123, 260, 360, 573
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 2 cut(s) 253, 532
Sau96I GGNCC 2 cut(s) 70, 97
ScaI AGTACT 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 29, 344
SexAI ACCWGGT 1 cut(s) 27
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 2 cut(s) 70, 97
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 2 cut(s) 65, 259
SmoI CTYRAG 2 cut(s) 65, 259
Sse9I AATT 7 cut(s) 309, 356, 379, 408, 417, 425, 502
SsiI CCGC 2 cut(s) 347, 560
SspI AATATT 1 cut(s) 147
SspMI CTAG 2 cut(s) 467, 606
StyD4I CCNGG 2 cut(s) 27, 342
TaaI ACNGT 2 cut(s) 108, 396
TaqI TCGA 1 cut(s) 78
TasI AATT 7 cut(s) 309, 356, 379, 408, 417, 425, 502
TatI WGTACW 2 cut(s) 108, 454
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 4 cut(s) 123, 260, 360, 573
Tru9I TTAA 4 cut(s) 123, 260, 360, 573
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 49, 418
Vha464I CTTAAG 1 cut(s) 259
VpaK11BI GGWCC 2 cut(s) 70, 97
XapI RAATTY 6 cut(s) 309, 356, 379, 408, 417, 425
XceI RCATGY 1 cut(s) 605
XspI CTAG 2 cut(s) 467, 606
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.