Rh6AG021000

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000131
Physical Location & Seq
Forward (+)
2356097 .. 2362406
6310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG021000.1

Sequence Viewer

Length: 891 bp
ATGAGGAAAATGAAAGGAAATATTGTAGCTGCTCCAACTGACATAGAAAACCAGTACGATCCATTAGAAACTTTGATAAAGAAGGTGGATAGCTTGTCTCCCCCGTCCCCTTTGCGTTGCATCTACCGGGTTCCGTATCGACTCCGCCGTGTACACGAGGAGGCCTACACACCTCGTGTAATCTCCATAGGCCCATTTCATCATGGAAATGAAGCCTTGAAAGCCATGGAAGATCACAAAAAGTGGTACCTTAAATGTTTCATGGGCCGAACCAGTTCAAAGCTGAATGATTGTGCAAGAAAAATAGAAGACCAAGAAAAGAAATTGCGGAGTTGGTACGGTGAGACCATTGTGCGTAAAAGTGATGAATTTGTCACGATCATTTTTGTGGATGCCATCTTCGTCATTGAGTTCTTATGGAGGTACTGGGACGATAAATTGCGAGATGCAAATGACTGCATATTTGGAAAACCAAGGATGGTAGAGGATATACTGACTGACTTGCTGATGCTTGAAAATCAGCTGCCATTCTTCATTCTCAAGGACCTTTTCGACTCAATTGCAAACAGAATTAAAGTCCCTAGTGTTGAGAGGCTTTCCATACGGTTTCTTCATCAGGAGTTTTCAGTTGGTGTCACAACTTTCGGGGGAATGTCATTAGAGGAGTTATTGACAAAAATAGATTCTTCCAAAGAAGAAGTGCAACATCTTGTTGATCTCTTAAGAAAGCTATGGATAGCTCCTTTATCGAATGAACAAAGAAAATCTGCCACCAACAAAAAAAATCTGCAACAGCACCTAGCATTGAAAAGCTACACCTGGCAGGAGTCAAATTTAAGGTCAAATCAGACACGAACTTGTTTGACATACGATTCGATAAAGGGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

296

Amino Acids

34.72

Weight (kDa)

8.93

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 41 - 263 1.3e-55 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 246
AciI CCGC 2 cut(s) 145, 328
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 2 cut(s) 368, 832
AdeI CACNNNGTG 1 cut(s) 176
AfaI GTAC 5 cut(s) 56, 153, 248, 338, 425
AflII CTTAAG 1 cut(s) 721
AgsI TTSAA 4 cut(s) 220, 279, 515, 808
AjnI CCWGG 1 cut(s) 818
AluBI AGCT 7 cut(s) 29, 93, 283, 523, 730, 740, 813
AluI AGCT 7 cut(s) 29, 93, 283, 523, 730, 740, 813
Alw26I GTCTC 2 cut(s) 102, 338
AlwI GGATC 1 cut(s) 53
AoxI GGCC 3 cut(s) 162, 190, 265
ApeKI GCWGC 2 cut(s) 29, 523
ApoI RAATTY 2 cut(s) 368, 832
ArsI GACNNNNNNTTYG 6 cut(s) 446, 478, 824, 856, 856, 888
Asp700I GAANNNNTTC 1 cut(s) 274
Asp718I GGTACC 1 cut(s) 246
AspS9I GGNCC 3 cut(s) 191, 265, 544
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 353
AvaII GGWCC 1 cut(s) 544
BanI GGYRCC 1 cut(s) 246
BauI CACGAG 2 cut(s) 155, 174
BbsI GAAGAC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 16, 510
BccI CCATC 2 cut(s) 404, 472
BceAI ACGGC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 542, 576
BciT130I CCWGG 1 cut(s) 820
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 102, 338
BfaI CTAG 2 cut(s) 582, 800
BfrI CTTAAG 1 cut(s) 721
BisI GCNGC 2 cut(s) 30, 524
BlsI GCNGC 2 cut(s) 31, 525
Bme1390I CCNGG 2 cut(s) 128, 820
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 3 cut(s) 191, 265, 544
BmiI GGNNCC 2 cut(s) 132, 248
BmrFI CCNGG 2 cut(s) 128, 820
BmrI ACTGGG 1 cut(s) 436
BmsI GCATC 4 cut(s) 129, 382, 436, 498
BmuI ACTGGG 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 225, 473
Bse1I ACTGG 3 cut(s) 52, 273, 431
BseBI CCWGG 1 cut(s) 820
BseDI CCNNGG 2 cut(s) 225, 473
BseGI GGATG 2 cut(s) 397, 483
BseNI ACTGG 3 cut(s) 52, 273, 431
BseRI GAGGAG 2 cut(s) 173, 677
BseXI GCAGC 2 cut(s) 16, 510
BshFI GGCC 3 cut(s) 164, 192, 267
BshNI GGYRCC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 127
BslFI GGGAC 3 cut(s) 91, 443, 563
BsmAI GTCTC 2 cut(s) 102, 338
BsmFI GGGAC 3 cut(s) 91, 443, 563
BsnI GGCC 3 cut(s) 164, 192, 267
Bso31I GGTCTC 1 cut(s) 338
Bsp1407I TGTACA 1 cut(s) 151
Bsp143I GATC 4 cut(s) 58, 232, 378, 715
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 2 cut(s) 145, 328
BspANI GGCC 3 cut(s) 164, 192, 267
BspLI GGNNCC 2 cut(s) 132, 248
BspPI GGATC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 246
BspTI CTTAAG 1 cut(s) 721
BspTNI GGTCTC 1 cut(s) 338
BsrGI TGTACA 1 cut(s) 151
BsrI ACTGG 3 cut(s) 52, 273, 431
BssECI CCNNGG 2 cut(s) 225, 473
BssMI GATC 4 cut(s) 58, 232, 378, 715
BssSI CACGAG 2 cut(s) 155, 174
BssT1I CCWWGG 2 cut(s) 225, 473
Bst2BI CACGAG 2 cut(s) 155, 174
Bst2UI CCWGG 1 cut(s) 820
Bst4CI ACNGT 2 cut(s) 341, 606
BstAFI CTTAAG 1 cut(s) 721
BstAUI TGTACA 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 2 cut(s) 397, 483
BstKTI GATC 4 cut(s) 61, 235, 381, 718
BstMAI GTCTC 2 cut(s) 102, 338
BstMBI GATC 4 cut(s) 58, 232, 378, 715
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 1 cut(s) 820
BstSCI CCNGG 2 cut(s) 126, 818
BstV1I GCAGC 2 cut(s) 16, 510
BstV2I GAAGAC 1 cut(s) 315
BsuRI GGCC 3 cut(s) 164, 192, 267
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 2 cut(s) 397, 483
Cfr13I GGNCC 3 cut(s) 191, 265, 544
Csp6I GTAC 5 cut(s) 55, 152, 247, 337, 424
CviAII CATG 3 cut(s) 203, 226, 262
CviQI GTAC 5 cut(s) 55, 152, 247, 337, 424
DpnI GATC 4 cut(s) 60, 234, 380, 717
DpnII GATC 4 cut(s) 58, 232, 378, 715
DraIII CACNNNGTG 1 cut(s) 176
EciI GGCGGA 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 225, 473
Eco147I AGGCCT 1 cut(s) 164
Eco31I GGTCTC 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 544
EcoO109I RGGNCCY 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 818
EcoT14I CCWWGG 2 cut(s) 225, 473
ErhI CCWWGG 2 cut(s) 225, 473
FaeI CATG 3 cut(s) 206, 229, 265
FaqI GGGAC 3 cut(s) 91, 443, 563
FatI CATG 3 cut(s) 202, 225, 261
Fnu4HI GCNGC 2 cut(s) 30, 524
FokI GGATG 2 cut(s) 404, 490
Fsp4HI GCNGC 2 cut(s) 30, 524
FspBI CTAG 2 cut(s) 582, 800
GluI GCNGC 2 cut(s) 30, 524
HaeIII GGCC 3 cut(s) 164, 192, 267
HapII CCGG 1 cut(s) 127
Hin1II CATG 3 cut(s) 206, 229, 265
HinfI GANTC 6 cut(s) 141, 554, 683, 827, 872, 885
HpaII CCGG 1 cut(s) 127
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 152, 154
Hpy188I TCNGA 1 cut(s) 849
Hpy188III TCNNGA 2 cut(s) 376, 617
Hpy8I GTNNAC 2 cut(s) 152, 154
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 341, 606
HpyCH4V TGCA 7 cut(s) 120, 296, 449, 459, 563, 703, 790
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
Hsp92II CATG 3 cut(s) 206, 229, 265
KpnI GGTACC 1 cut(s) 250
Kzo9I GATC 4 cut(s) 58, 232, 378, 715
LmnI GCTCC 2 cut(s) 37, 745
LpnPI CCDG 8 cut(s) 65, 140, 286, 412, 602, 805, 809, 832
Lsp1109I GCAGC 2 cut(s) 16, 510
LweI GCATC 4 cut(s) 129, 382, 436, 498
MaeI CTAG 2 cut(s) 582, 800
MaeIII GTNAC 2 cut(s) 373, 634
MalI GATC 4 cut(s) 60, 234, 380, 717
MboI GATC 4 cut(s) 58, 232, 378, 715
MboII GAAGA 7 cut(s) 242, 320, 391, 523, 602, 678, 707
MfeI CAATTG 1 cut(s) 558
MluCI AATT 6 cut(s) 323, 368, 437, 558, 570, 832
MlyI GAGTC 3 cut(s) 135, 548, 836
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 7 cut(s) 151, 154, 183, 414, 478, 585, 655
MroXI GAANNNNTTC 1 cut(s) 274
MseI TTAA 4 cut(s) 252, 573, 722, 836
MslI CAYNNNNRTG 2 cut(s) 207, 386
MspA1I CMGCKG 1 cut(s) 523
MspCI CTTAAG 1 cut(s) 721
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 2 cut(s) 128, 820
MunI CAATTG 1 cut(s) 558
MvaI CCWGG 1 cut(s) 820
MwoI GCNNNNNNNGC 1 cut(s) 221
NciI CCSGG 1 cut(s) 128
NcoI CCATGG 1 cut(s) 225
NdeII GATC 4 cut(s) 58, 232, 378, 715
NlaIII CATG 3 cut(s) 206, 229, 265
NlaIV GGNNCC 2 cut(s) 132, 248
NmuCI GTSAC 2 cut(s) 373, 634
PceI AGGCCT 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 274
PfeI GAWTC 3 cut(s) 683, 872, 885
PkrI GCNGC 2 cut(s) 31, 525
PleI GAGTC 3 cut(s) 135, 548, 835
PpsI GAGTC 3 cut(s) 135, 548, 835
PpuMI RGGWCCY 1 cut(s) 544
Psp5II RGGWCCY 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 818
PspGI CCWGG 1 cut(s) 818
PspN4I GGNNCC 2 cut(s) 132, 248
PspPI GGNCC 3 cut(s) 191, 265, 544
PspPPI RGGWCCY 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 5 cut(s) 56, 153, 248, 338, 425
RsaNI GTAC 5 cut(s) 55, 152, 247, 337, 424
RseI CAYNNNNRTG 2 cut(s) 207, 386
SaqAI TTAA 4 cut(s) 252, 573, 722, 836
SatI GCNGC 2 cut(s) 30, 524
Sau3AI GATC 4 cut(s) 58, 232, 378, 715
Sau96I GGNCC 3 cut(s) 191, 265, 544
SchI GAGTC 3 cut(s) 135, 548, 836
ScrFI CCNGG 2 cut(s) 128, 820
SfaNI GCATC 4 cut(s) 129, 382, 436, 498
SinI GGWCC 1 cut(s) 544
SmiMI CAYNNNNRTG 2 cut(s) 207, 386
SmlI CTYRAG 2 cut(s) 539, 721
SmoI CTYRAG 2 cut(s) 539, 721
Sse9I AATT 6 cut(s) 323, 368, 437, 558, 570, 832
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 2 cut(s) 145, 328
SspI AATATT 1 cut(s) 22
SspMI CTAG 2 cut(s) 582, 800
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 126, 818
StyI CCWWGG 2 cut(s) 225, 473
TaaI ACNGT 2 cut(s) 341, 606
TaqI TCGA 4 cut(s) 139, 552, 749, 875
TasI AATT 6 cut(s) 323, 368, 437, 558, 570, 832
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 3 cut(s) 683, 872, 885
Tru1I TTAA 4 cut(s) 252, 573, 722, 836
Tru9I TTAA 4 cut(s) 252, 573, 722, 836
TseFI GTSAC 2 cut(s) 373, 634
TseI GCWGC 2 cut(s) 29, 523
Tsp45I GTSAC 2 cut(s) 373, 634
TspDTI ATGAA 8 cut(s) 26, 188, 225, 250, 381, 523, 602, 768
TspGWI ACGGA 1 cut(s) 123
Vha464I CTTAAG 1 cut(s) 721
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 2 cut(s) 368, 832
XmnI GAANNNNTTC 1 cut(s) 274
XspI CTAG 2 cut(s) 582, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.