Prupe.1G476900_v2.0.a1

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000131
Physical Location & Seq
Reverse (-)
39876940 .. 39878463
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G476900.1

Sequence Viewer

Length: 1191 bp
ATGGAAGATCACAAACTCAGGTACCTAAAGTGTTTTCTTGATTGGACTAATGTAAAATTGAAGGATTATTTCGAGAAAATAAAGGAGAGAGAAGTTGAACTCCGTCATTATTATGAAGACACTAAGAAGTTTAACATTGCTGCTTTTGTGAATATCATTCGAGTTGATGCCGCCTTTGTCATTGAGCTATTGTTGAGGAATAAATCCGAAGAAAAATTTCAGGAAGAAAAATTGCAGGATGATAATGCTTGGATATTTAAAAAACCATGGGTGCTACAAAATATATTGCCTGACATGCTTATGCTTGGAAATCAGCTGCCATTTTTCATTCTCGAGGATCTTTACAATCTCACAGGTGCTCAGACTGGGGAGCCTTCAATAATTGAACTCTCTTACAGGTTCTTCCAACAGGCACTGCGTTTAGAAAACTTGGAGAACTCACCAGCCTTCCGTAAGTCTTTTATGCCTCCTGATCCTAAAAAACCTTTACATTTTGTTGATTTTATTAGAACTTTACATCTGCCAGATCCGACCCTAAAAGAAAATGTAGGGCTCCAAAGGACACCCAGCATGACAAAACTACACCAGGCCGGATCAAGCAAGAACTTATTCGATATACAGTTCAAGAAAAACACCTTGGAAATTCCAAAAATTGAAATACATAATTACACAGAGCTTACACTTAGAAATCTCATTGCCTTTGAACAATGCCATTGCGTGGATAAATACATAAGCTATTATGTTTTCATCCTGGATAAATTTGTAAACACTCCAAAGGATGTAGAGTTGCTTGTTGAGAATAGAATTGTTGTAAACATGCAAGGTGACAACAATAAGGTTTCCATTATGATTAACAAGCTTTGCAGTAAAGTTGCTCTGAACCACGGAAACTACTATTTTGAGAAGACCACGAACATATGGAAGGCAAATTTGAGACAAAAGTATTTCAACACACCTTGGGCAGCTATTTCTCTCTTTGCAGCTATTATTCTTCTGATACTCACTGTCATACAAATAGTGTGCGCTATTATCTCTGTTATTGATCAACTATTAGCAGTCTCTCTCCTCCACAAAGGACGAAAGCAACAAGTGAAGTCCTTGTCCTTCTTCAAGCAGCAGTGCAGTAACAGTAGCAGCAACACAGTAACAGTGTCAGCAGCAGCAACAACAGTGCAGCATCCCATATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

397

Amino Acids

46.18

Weight (kDa)

8.88

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AccB7I CCANNNNNTGG 1 cut(s) 718
AciI CCGC 1 cut(s) 171
AclWI GGATC 4 cut(s) 345, 467, 521, 601
AcsI RAATTY 4 cut(s) 215, 642, 758, 928
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 718
AgsI TTSAA 9 cut(s) 61, 98, 378, 386, 625, 656, 704, 949, 1111
AjnI CCWGG 2 cut(s) 585, 750
AjuI GAANNNNNNNTTGG 2 cut(s) 620, 652
AluBI AGCT 7 cut(s) 187, 316, 676, 735, 859, 965, 983
AluI AGCT 7 cut(s) 187, 316, 676, 735, 859, 965, 983
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 928, 1063
AlwI GGATC 4 cut(s) 345, 467, 521, 601
AlwNI CAGNNNCTG 1 cut(s) 415
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 1 cut(s) 588
ApeKI GCWGC 9 cut(s) 140, 316, 962, 980, 1114, 1134, 1157, 1160, 1174
ApoI RAATTY 4 cut(s) 215, 642, 758, 928
Asp700I GAANNNNTTC 2 cut(s) 216, 608
Asp718I GGTACC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 1025
AsuHPI GGTGA 2 cut(s) 432, 836
AvaI CYCGRG 1 cut(s) 332
BaeI ACNNNNGTAYC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 555
BbsI GAAGAC 2 cut(s) 123, 911
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 9 cut(s) 127, 303, 974, 992, 1126, 1146, 1169, 1172, 1186
BciT130I CCWGG 2 cut(s) 587, 752
BclI TGATCA 1 cut(s) 1042
BcoDI GTCTC 2 cut(s) 928, 1063
Bme1390I CCNGG 2 cut(s) 587, 752
BmeT110I CYCGRG 1 cut(s) 332
BmiI GGNNCC 3 cut(s) 23, 372, 554
BmrFI CCNGG 2 cut(s) 587, 752
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 2 cut(s) 157, 1186
BmuI ACTGGG 1 cut(s) 375
BpiI GAAGAC 2 cut(s) 123, 911
BsaJI CCNNGG 4 cut(s) 266, 636, 883, 956
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 3 cut(s) 135, 693, 712
BseBI CCWGG 2 cut(s) 587, 752
BseDI CCNNGG 4 cut(s) 266, 636, 883, 956
BseGI GGATG 4 cut(s) 244, 747, 784, 1177
BseLI CCNNNNNNNGG 1 cut(s) 718
BseMI GCAATG 3 cut(s) 135, 693, 712
BseMII CTCAG 2 cut(s) 31, 374
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 1055
BseXI GCAGC 9 cut(s) 127, 303, 974, 992, 1126, 1146, 1169, 1172, 1186
BseYI CCCAGC 1 cut(s) 566
BsgI GTGCAG 1 cut(s) 1141
BshFI GGCC 1 cut(s) 590
BshNI GGYRCC 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 1 cut(s) 591
BslI CCNNNNNNNGG 1 cut(s) 718
BsmAI GTCTC 2 cut(s) 928, 1063
BsnI GGCC 1 cut(s) 590
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 361, 555
Bsp143I GATC 6 cut(s) 7, 337, 472, 526, 593, 1042
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 590
BspCNI CTCAG 2 cut(s) 30, 373
BspLI GGNNCC 3 cut(s) 23, 372, 554
BspPI GGATC 4 cut(s) 345, 467, 521, 601
BspT107I GGYRCC 1 cut(s) 21
BsrDI GCAATG 3 cut(s) 135, 693, 712
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 4 cut(s) 266, 636, 883, 956
BssMI GATC 6 cut(s) 7, 337, 472, 526, 593, 1042
BssT1I CCWWGG 3 cut(s) 266, 636, 956
Bst2UI CCWGG 2 cut(s) 587, 752
Bst4CI ACNGT 6 cut(s) 621, 1006, 1130, 1144, 1150, 1171
BstDEI CTNAG 4 cut(s) 17, 123, 360, 683
BstDSI CCRYGG 2 cut(s) 266, 883
BstF5I GGATG 4 cut(s) 244, 747, 784, 1177
BstHHI GCGC 1 cut(s) 1025
BstKTI GATC 6 cut(s) 10, 340, 475, 529, 596, 1045
BstMAI GTCTC 2 cut(s) 928, 1063
BstMBI GATC 6 cut(s) 7, 337, 472, 526, 593, 1042
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 2 cut(s) 587, 752
BstNSI RCATGY 2 cut(s) 298, 820
BstSCI CCNGG 2 cut(s) 585, 750
BstV1I GCAGC 9 cut(s) 127, 303, 974, 992, 1126, 1146, 1169, 1172, 1186
BstV2I GAAGAC 2 cut(s) 123, 911
BstX2I RGATCY 2 cut(s) 337, 526
BstYI RGATCY 2 cut(s) 337, 526
BsuRI GGCC 1 cut(s) 590
BtgI CCRYGG 2 cut(s) 266, 883
BtsCI GGATG 4 cut(s) 244, 747, 784, 1177
BtsI GCAGTG 2 cut(s) 413, 1124
BtsIMutI CAGTG 5 cut(s) 413, 1002, 1124, 1155, 1176
CaiI CAGNNNCTG 1 cut(s) 415
CfoI GCGC 1 cut(s) 1025
Csp6I GTAC 1 cut(s) 22
CviAII CATG 4 cut(s) 267, 295, 571, 817
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 4 cut(s) 17, 123, 360, 683
DpnI GATC 6 cut(s) 9, 339, 474, 528, 595, 1044
DpnII GATC 6 cut(s) 7, 337, 472, 526, 593, 1042
DraI TTTAAA 1 cut(s) 259
Eco130I CCWWGG 3 cut(s) 266, 636, 956
Eco24I GRGCYC 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 332
EcoRII CCWGG 2 cut(s) 585, 750
EcoT14I CCWWGG 3 cut(s) 266, 636, 956
EcoT38I GRGCYC 1 cut(s) 555
ErhI CCWWGG 3 cut(s) 266, 636, 956
FaeI CATG 4 cut(s) 270, 298, 574, 820
FatI CATG 4 cut(s) 266, 294, 570, 816
FauNDI CATATG 1 cut(s) 917
FbaI TGATCA 1 cut(s) 1042
FokI GGATG 4 cut(s) 251, 734, 791, 1164
FriOI GRGCYC 1 cut(s) 555
GlaI GCGC 1 cut(s) 1024
GsaI CCCAGC 1 cut(s) 570
HaeIII GGCC 1 cut(s) 590
HapII CCGG 1 cut(s) 591
HhaI GCGC 1 cut(s) 1025
Hin1II CATG 4 cut(s) 270, 298, 574, 820
Hin6I GCGC 1 cut(s) 1023
HinP1I GCGC 1 cut(s) 1023
HindIII AAGCTT 1 cut(s) 857
HpaII CCGG 1 cut(s) 591
HphI GGTGA 2 cut(s) 432, 836
Hpy166II GTNNAC 2 cut(s) 766, 814
Hpy188I TCNGA 5 cut(s) 208, 363, 531, 879, 996
Hpy188III TCNNGA 6 cut(s) 38, 73, 221, 332, 470, 625
Hpy8I GTNNAC 2 cut(s) 766, 814
HpyAV CCTTC 5 cut(s) 55, 384, 457, 916, 1114
HpyCH4III ACNGT 6 cut(s) 621, 1006, 1130, 1144, 1150, 1171
HpyCH4V TGCA 6 cut(s) 235, 820, 864, 980, 1122, 1174
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 4 cut(s) 17, 123, 360, 683
Hsp92II CATG 4 cut(s) 270, 298, 574, 820
HspAI GCGC 1 cut(s) 1023
KpnI GGTACC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 1042
Kzo9I GATC 6 cut(s) 7, 337, 472, 526, 593, 1042
LmnI GCTCC 2 cut(s) 370, 558
Lsp1109I GCAGC 9 cut(s) 127, 303, 974, 992, 1126, 1146, 1169, 1172, 1186
LweI GCATC 2 cut(s) 157, 1186
MaeIII GTNAC 3 cut(s) 824, 1124, 1144
MalI GATC 6 cut(s) 9, 339, 474, 528, 595, 1044
MboI GATC 6 cut(s) 7, 337, 472, 526, 593, 1042
MboII GAAGA 8 cut(s) 17, 128, 221, 236, 394, 916, 983, 1099
MflI RGATCY 2 cut(s) 337, 526
MhlI GDGCHC 2 cut(s) 361, 555
MmeI TCCRAC 2 cut(s) 430, 554
MnlI CCTC 4 cut(s) 189, 328, 477, 1076
MroXI GAANNNNTTC 2 cut(s) 216, 608
MseI TTAA 4 cut(s) 132, 258, 852, 1189
MslI CAYNNNNRTG 2 cut(s) 111, 299
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 1 cut(s) 591
MspR9I CCNGG 2 cut(s) 587, 752
MvaI CCWGG 2 cut(s) 587, 752
MwoI GCNNNNNNNGC 1 cut(s) 295
NcoI CCATGG 1 cut(s) 266
NdeI CATATG 1 cut(s) 917
NdeII GATC 6 cut(s) 7, 337, 472, 526, 593, 1042
NlaIII CATG 4 cut(s) 270, 298, 574, 820
NlaIV GGNNCC 3 cut(s) 23, 372, 554
NmuCI GTSAC 1 cut(s) 824
NspI RCATGY 2 cut(s) 298, 820
PaeR7I CTCGAG 1 cut(s) 332
PdmI GAANNNNTTC 2 cut(s) 216, 608
PflMI CCANNNNNTGG 1 cut(s) 718
PfoI TCCNGGA 1 cut(s) 750
Psp6I CCWGG 2 cut(s) 585, 750
PspFI CCCAGC 1 cut(s) 566
PspGI CCWGG 2 cut(s) 585, 750
PspN4I GGNNCC 3 cut(s) 23, 372, 554
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 2 cut(s) 337, 526
PvuII CAGCTG 1 cut(s) 316
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 2 cut(s) 111, 299
SaqAI TTAA 4 cut(s) 132, 258, 852, 1189
Sau3AI GATC 6 cut(s) 7, 337, 472, 526, 593, 1042
ScrFI CCNGG 2 cut(s) 587, 752
SduI GDGCHC 2 cut(s) 361, 555
SfaNI GCATC 2 cut(s) 157, 1186
Sfr274I CTCGAG 1 cut(s) 332
SlaI CTCGAG 1 cut(s) 332
SmiMI CAYNNNNRTG 2 cut(s) 111, 299
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SsiI CCGC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 585, 750
StyI CCWWGG 3 cut(s) 266, 636, 956
TaaI ACNGT 6 cut(s) 621, 1006, 1130, 1144, 1150, 1171
TaqI TCGA 4 cut(s) 72, 160, 333, 612
TauI GCSGC 1 cut(s) 173
Tru1I TTAA 4 cut(s) 132, 258, 852, 1189
Tru9I TTAA 4 cut(s) 132, 258, 852, 1189
TscAI CASTG 5 cut(s) 420, 1009, 1124, 1155, 1176
TseFI GTSAC 1 cut(s) 824
TseI GCWGC 9 cut(s) 140, 316, 962, 980, 1114, 1134, 1157, 1160, 1174
Tsp45I GTSAC 1 cut(s) 824
TspDTI ATGAA 3 cut(s) 129, 316, 736
TspGWI ACGGA 3 cut(s) 92, 440, 900
TspRI CASTG 5 cut(s) 420, 1009, 1124, 1155, 1176
Van91I CCANNNNNTGG 1 cut(s) 718
XapI RAATTY 4 cut(s) 215, 642, 758, 928
XceI RCATGY 2 cut(s) 298, 820
XhoI CTCGAG 1 cut(s) 332
XmnI GAANNNNTTC 2 cut(s) 216, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.