Rh3BG231700

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000131
Physical Location & Seq
Reverse (-)
21478886 .. 21486847
7962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG231700.1

Sequence Viewer

Length: 1623 bp
ATGGTCAGAGAATGCGCTGTCCCAGCAATCCGTCCTTCGGGAGAAATCCGTCCTTCGAAAGAAATCCATCTTTTGGGAGGTCAATATGGTGAAGTTTTCAACTATCTACCTTACAAGGGGCTTCTGAAAATTAACTATAGACTAAATTTGGGAATCATTTTTTTTTCTTTCCTTTTTCTGTTTTTTCCTCAACAAGCAGAAGCACCGGAGAAGGAGCCAAGAAGTCTTTATGAGGGTCTAAAACTGTGGTGTTGTAGCTCAGTCTCAGCTAAAGATCAGGTCGATAATCATGTGTCAAATTCAGCAGATGATGTTCCTATTGCTGCTGCTGCTGAACCAACATCGCCTGATCGGAGTCCGAGGAATCAAACAACAATGCGTAAACAAAATGTGAGTGATCCCATTGCAATTATAATAATGGATAAAGTTACAAACAAGCCTACATTTTGGCCCGACTGCTGTATCTATAAAGTCCCCGGGAGATTGTGCAAAGGTTACGAAGACTTCTACACACCTCGGGTGGTATCAGTTGGACCTTATCACTACTGCAATGGAGGAAGCTCGGAAGGAATGCAAGCCTATAAATTCATATACCTGGAGGCATTTTTCAGTCGGAACAACTTGAACTTGGACCACTGTCTTGGAGTTGTAAGAGAGCTAGAAGGAAAAGCCAGGAGTTATTATGTCGAGCCAGTCAAACTAAACAGTGATGAATTTGCTCTAATGTTGCTGGTGGATGGAAGTTTTCTTTTGGAGCTAATGCTTAGGCATTACTTTGTGGAAATTGTTGATGAATGTGATCGGATATATCGCAAGCCGAGAGTGATTCAGGATGTTTATCGCGACCTCTTGTTGATTGAGAACCAAATTCCCTTCTTTATTCTCGTGGCTTTGTATAAGGAATTGGATATGAAGACTTGGAGAGCCCAGCCATCTCTTGTGACGCTTACAAATGAGTTCTTCAGGTATTTGGTGGAAGTTGACAAGTTTCCTGGTCCAGAAAAAGTGAAGCATTTCGTTGATTTTATCCGATGGTACTACTTGCCCGAGTGTGACAGCGAGAGTGAAAAAGGGATTATCTTTGACGTTCCAAGTGTGACAGCAATGGACGAGGCTGGAGTTAAGTTTGAGAAAGTCACGAAATCGATCATATTGCTTGACATGGAATTCACTAATGGCTCTCTGCGAATTCCGCACTTCAAAGTAGATGATTGGAGTGAGACTCTCTTCAGGAATCTCATTGCGTTTGAGCAATGTCATGATCACAAAGTAAAGTACATCTCACAGTTTATGTGCCTTATGGGGTGTATGATCAGGACTCCAAAGGATGCAGATTTACTCATCGATCGCGAAATTATATCTACCACGCTAGGGACTAGTGAAGATATTTCGACCATATTCAACAAGATTAGCAAAGGTGTGACCTTGGATGGTTCATTTTATTACTTCACTCTCCTTAAAAATCTGAATAAATATTGCAGGAACCCATGGCACAGTTGGAAAGCAACTCTGAAGAGGGACTATTTCAACACTCCATGGAAACTGGTTTCTACAATTGCTGCATTTGTATTGCTTGTCCTCACTGTTATACAAACAGTGTGCTCCATCATATCCCTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

540

Amino Acids

62.33

Weight (kDa)

6.26

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 155 - 527 3.5e-104 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
AccB7I CCANNNNNTGG 1 cut(s) 73
AccII CGCG 2 cut(s) 843, 1350
AciI CCGC 1 cut(s) 1193
AclWI GGATC 1 cut(s) 392
AcsI RAATTY 7 cut(s) 145, 298, 584, 713, 867, 1166, 1188
AcuI CTGAAG 3 cut(s) 946, 1213, 1532
AfaI GTAC 2 cut(s) 1037, 1277
AfiI CCNNNNNNNGG 4 cut(s) 37, 73, 116, 1371
AgsI TTSAA 5 cut(s) 100, 625, 1201, 1402, 1528
AhlI ACTAGT 1 cut(s) 1376
AjnI CCWGG 3 cut(s) 594, 671, 991
AluBI AGCT 5 cut(s) 258, 269, 561, 658, 757
AluI AGCT 5 cut(s) 258, 269, 561, 658, 757
Alw21I GWGCWC 1 cut(s) 1604
Alw26I GTCTC 2 cut(s) 268, 1214
AlwI GGATC 1 cut(s) 392
Ama87I CYCGRG 3 cut(s) 476, 516, 1046
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 4 cut(s) 323, 326, 329, 1559
ApoI RAATTY 7 cut(s) 145, 298, 584, 713, 867, 1166, 1188
Asp700I GAANNNNTTC 1 cut(s) 1013
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 4 cut(s) 450, 533, 631, 995
AsuC2I CCSGG 2 cut(s) 477, 478
AsuHPI GGTGA 1 cut(s) 101
AsuII TTCGAA 1 cut(s) 56
AvaI CYCGRG 3 cut(s) 476, 516, 1046
AvaII GGWCC 3 cut(s) 533, 631, 995
BaeI ACNNNNGTAYC 2 cut(s) 445, 478
BanII GRGCYC 1 cut(s) 928
BauI CACGAG 1 cut(s) 884
BbsI GAAGAC 2 cut(s) 507, 920
Bbv12I GWGCWC 1 cut(s) 1604
BbvI GCAGC 4 cut(s) 310, 313, 316, 1546
BccI CCATC 6 cut(s) 75, 731, 940, 1026, 1424, 1613
BcgI CGANNNNNNTGC 2 cut(s) 1135, 1169
BciT130I CCWGG 3 cut(s) 596, 673, 993
BclI TGATCA 2 cut(s) 1261, 1311
BcnI CCSGG 2 cut(s) 477, 478
BcoDI GTCTC 2 cut(s) 268, 1214
BcuI ACTAGT 1 cut(s) 1376
BfaI CTAG 3 cut(s) 659, 1370, 1377
BfmI CTRYAG 1 cut(s) 136
BisI GCNGC 4 cut(s) 324, 327, 330, 1560
BlsI GCNGC 4 cut(s) 325, 328, 331, 1561
Bme1390I CCNGG 5 cut(s) 477, 478, 596, 673, 993
Bme18I GGWCC 3 cut(s) 533, 631, 995
BmeT110I CYCGRG 3 cut(s) 476, 516, 1046
BmgT120I GGNCC 4 cut(s) 450, 533, 631, 995
BmiI GGNNCC 2 cut(s) 216, 1484
BmrFI CCNGG 5 cut(s) 477, 478, 596, 673, 993
BmsI GCATC 1 cut(s) 1318
BoxI GACNNNNGTC 1 cut(s) 636
BpiI GAAGAC 2 cut(s) 507, 920
BplI GAGNNNNNCTC 2 cut(s) 1207, 1239
BpmI CTGGAG 2 cut(s) 617, 1137
Bpu10I CCTNAGC 1 cut(s) 764
Bpu14I TTCGAA 1 cut(s) 56
BpuMI CCSGG 2 cut(s) 477, 478
Bsa29I ATCGAT 2 cut(s) 1145, 1344
BsaBI GATNNNNATC 1 cut(s) 837
BsaJI CCNNGG 7 cut(s) 359, 475, 476, 515, 1425, 1487, 1535
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 73, 116, 1371
Bse1I ACTGG 2 cut(s) 692, 1548
Bse3DI GCAATG 5 cut(s) 402, 556, 1110, 1239, 1259
Bse8I GATNNNNATC 1 cut(s) 837
BseBI CCWGG 3 cut(s) 596, 673, 993
BseCI ATCGAT 2 cut(s) 1145, 1344
BseDI CCNNGG 7 cut(s) 359, 475, 476, 515, 1425, 1487, 1535
BseGI GGATG 4 cut(s) 742, 838, 1333, 1435
BseJI GATNNNNATC 1 cut(s) 837
BseLI CCNNNNNNNGG 4 cut(s) 37, 73, 116, 1371
BseMI GCAATG 5 cut(s) 402, 556, 1110, 1239, 1259
BseMII CTCAG 2 cut(s) 273, 279
BseNI ACTGG 2 cut(s) 692, 1548
BseXI GCAGC 4 cut(s) 310, 313, 316, 1546
BseYI CCCAGC 2 cut(s) 22, 927
Bsh1236I CGCG 2 cut(s) 843, 1350
Bsh1285I CGRYCG 1 cut(s) 1348
BshFI GGCC 1 cut(s) 451
BshVI ATCGAT 2 cut(s) 1145, 1344
BsiEI CGRYCG 1 cut(s) 1348
BsiHKAI GWGCWC 1 cut(s) 1604
BsiHKCI CYCGRG 3 cut(s) 476, 516, 1046
BsiSI CCGG 2 cut(s) 206, 477
BslFI GGGAC 4 cut(s) 5, 458, 1387, 1532
BslI CCNNNNNNNGG 4 cut(s) 37, 73, 116, 1371
BsmAI GTCTC 2 cut(s) 268, 1214
BsmFI GGGAC 4 cut(s) 5, 458, 1387, 1532
BsmI GAATGC 2 cut(s) 17, 576
BsnI GGCC 1 cut(s) 451
BsoBI CYCGRG 3 cut(s) 476, 516, 1046
Bsp119I TTCGAA 1 cut(s) 56
Bsp1286I GDGCHC 2 cut(s) 928, 1604
Bsp143I GATC 8 cut(s) 274, 349, 397, 799, 1146, 1261, 1311, 1345
Bsp19I CCATGG 2 cut(s) 1487, 1535
Bsp68I TCGCGA 2 cut(s) 843, 1350
BspACI CCGC 1 cut(s) 1193
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 2 cut(s) 272, 278
BspDI ATCGAT 2 cut(s) 1145, 1344
BspFNI CGCG 2 cut(s) 843, 1350
BspHI TCATGA 1 cut(s) 1258
BspLI GGNNCC 2 cut(s) 216, 1484
BspPI GGATC 1 cut(s) 392
BspT104I TTCGAA 1 cut(s) 56
BsrDI GCAATG 5 cut(s) 402, 556, 1110, 1239, 1259
BsrI ACTGG 2 cut(s) 692, 1548
BssECI CCNNGG 7 cut(s) 359, 475, 476, 515, 1425, 1487, 1535
BssMI GATC 8 cut(s) 274, 349, 397, 799, 1146, 1261, 1311, 1345
BssSI CACGAG 1 cut(s) 884
BssT1I CCWWGG 3 cut(s) 1425, 1487, 1535
Bst2BI CACGAG 1 cut(s) 884
Bst2UI CCWGG 3 cut(s) 596, 673, 993
Bst4CI ACNGT 7 cut(s) 246, 638, 707, 1287, 1496, 1585, 1597
Bst6I CTCTTC 2 cut(s) 1232, 1508
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 576, 815
BstDEI CTNAG 3 cut(s) 259, 265, 764
BstDSI CCRYGG 2 cut(s) 1487, 1535
BstF5I GGATG 4 cut(s) 742, 838, 1333, 1435
BstFNI CGCG 2 cut(s) 843, 1350
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 8 cut(s) 277, 352, 400, 802, 1149, 1264, 1314, 1348
BstMAI GTCTC 2 cut(s) 268, 1214
BstMBI GATC 8 cut(s) 274, 349, 397, 799, 1146, 1261, 1311, 1345
BstMCI CGRYCG 1 cut(s) 1348
BstMWI GCNNNNNNNGC 3 cut(s) 23, 329, 1192
BstNI CCWGG 3 cut(s) 596, 673, 993
BstPAI GACNNNNGTC 1 cut(s) 636
BstSCI CCNGG 5 cut(s) 475, 476, 594, 671, 991
BstSFI CTRYAG 1 cut(s) 136
BstUI CGCG 2 cut(s) 843, 1350
BstV1I GCAGC 4 cut(s) 310, 313, 316, 1546
BstV2I GAAGAC 2 cut(s) 507, 920
BstXI CCANNNNNNTGG 1 cut(s) 641
Bsu15I ATCGAT 2 cut(s) 1145, 1344
BsuRI GGCC 1 cut(s) 451
BsuTUI ATCGAT 2 cut(s) 1145, 1344
BtgI CCRYGG 2 cut(s) 1487, 1535
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 4 cut(s) 742, 838, 1333, 1435
BtsIMutI CAGTG 4 cut(s) 634, 712, 1581, 1602
BtuMI TCGCGA 2 cut(s) 843, 1350
Cac8I GCNNGC 2 cut(s) 576, 815
CciI TCATGA 1 cut(s) 1258
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 4 cut(s) 450, 533, 631, 995
Cfr9I CCCGGG 1 cut(s) 476
ClaI ATCGAT 2 cut(s) 1145, 1344
CseI GACGC 1 cut(s) 952
Csp6I GTAC 2 cut(s) 1036, 1276
CviAII CATG 5 cut(s) 290, 1162, 1259, 1488, 1536
CviQI GTAC 2 cut(s) 1036, 1276
DdeI CTNAG 3 cut(s) 259, 265, 764
DpnI GATC 8 cut(s) 276, 351, 399, 801, 1148, 1263, 1313, 1347
DpnII GATC 8 cut(s) 274, 349, 397, 799, 1146, 1261, 1311, 1345
Eam1104I CTCTTC 2 cut(s) 1232, 1508
EarI CTCTTC 2 cut(s) 1232, 1508
Eco130I CCWWGG 3 cut(s) 1425, 1487, 1535
Eco24I GRGCYC 1 cut(s) 928
Eco47I GGWCC 3 cut(s) 533, 631, 995
Eco57I CTGAAG 3 cut(s) 946, 1213, 1532
Eco88I CYCGRG 3 cut(s) 476, 516, 1046
EcoRI GAATTC 2 cut(s) 1166, 1188
EcoRII CCWGG 3 cut(s) 594, 671, 991
EcoT14I CCWWGG 3 cut(s) 1425, 1487, 1535
EcoT38I GRGCYC 1 cut(s) 928
ErhI CCWWGG 3 cut(s) 1425, 1487, 1535
FaeI CATG 5 cut(s) 293, 1165, 1262, 1491, 1539
FaqI GGGAC 4 cut(s) 5, 458, 1387, 1532
FatI CATG 5 cut(s) 289, 1161, 1258, 1487, 1535
FbaI TGATCA 2 cut(s) 1261, 1311
Fnu4HI GCNGC 4 cut(s) 324, 327, 330, 1560
FokI GGATG 4 cut(s) 749, 845, 1340, 1442
FriOI GRGCYC 1 cut(s) 928
Fsp4HI GCNGC 4 cut(s) 324, 327, 330, 1560
FspBI CTAG 3 cut(s) 659, 1370, 1377
GlaI GCGC 1 cut(s) 16
GluI GCNGC 4 cut(s) 324, 327, 330, 1560
GsaI CCCAGC 2 cut(s) 26, 931
GsuI CTGGAG 2 cut(s) 617, 1137
HaeIII GGCC 1 cut(s) 451
HapII CCGG 2 cut(s) 206, 477
HgaI GACGC 1 cut(s) 952
HhaI GCGC 1 cut(s) 17
Hin1II CATG 5 cut(s) 293, 1165, 1262, 1491, 1539
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 1 cut(s) 982
HindII GTYRAC 1 cut(s) 982
HinfI GANTC 7 cut(s) 153, 355, 364, 826, 1222, 1234, 1318
HpaII CCGG 2 cut(s) 206, 477
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 2 cut(s) 383, 982
Hpy188III TCNNGA 9 cut(s) 39, 830, 842, 998, 1138, 1231, 1259, 1315, 1349
Hpy8I GTNNAC 2 cut(s) 383, 982
HpyAV CCTTC 6 cut(s) 45, 63, 205, 560, 656, 883
HpyCH4III ACNGT 7 cut(s) 246, 638, 707, 1287, 1496, 1585, 1597
HpyCH4IV ACGT 1 cut(s) 1086
HpyCH4V TGCA 7 cut(s) 407, 489, 549, 574, 1331, 1479, 1562
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 329, 1192
HpyF3I CTNAG 3 cut(s) 259, 265, 764
HpySE526I ACGT 1 cut(s) 1086
Hsp92II CATG 5 cut(s) 293, 1165, 1262, 1491, 1539
HspAI GCGC 1 cut(s) 15
Ksp22I TGATCA 2 cut(s) 1261, 1311
Kzo9I GATC 8 cut(s) 274, 349, 397, 799, 1146, 1261, 1311, 1345
LmnI GCTCC 3 cut(s) 214, 754, 1607
Lsp1109I GCAGC 4 cut(s) 310, 313, 316, 1546
LweI GCATC 1 cut(s) 1318
MaeI CTAG 3 cut(s) 659, 1370, 1377
MaeII ACGT 1 cut(s) 1086
MaeIII GTNAC 7 cut(s) 427, 494, 940, 1052, 1096, 1135, 1420
MalI GATC 8 cut(s) 276, 351, 399, 801, 1148, 1263, 1313, 1347
MboI GATC 8 cut(s) 274, 349, 397, 799, 1146, 1261, 1311, 1345
MboII GAAGA 6 cut(s) 512, 925, 952, 1219, 1394, 1525
MfeI CAATTG 1 cut(s) 1554
MhlI GDGCHC 2 cut(s) 928, 1604
MlyI GAGTC 3 cut(s) 364, 1216, 1312
MmeI TCCRAC 3 cut(s) 511, 593, 1478
MroXI GAANNNNTTC 1 cut(s) 1013
MseI TTAA 4 cut(s) 132, 1122, 1458, 1621
MspI CCGG 2 cut(s) 206, 477
MspR9I CCNGG 5 cut(s) 477, 478, 596, 673, 993
MunI CAATTG 1 cut(s) 1554
Mva1269I GAATGC 2 cut(s) 17, 576
MvaI CCWGG 3 cut(s) 596, 673, 993
MvnI CGCG 2 cut(s) 843, 1350
MwoI GCNNNNNNNGC 3 cut(s) 23, 329, 1192
NciI CCSGG 2 cut(s) 477, 478
NcoI CCATGG 2 cut(s) 1487, 1535
NdeII GATC 8 cut(s) 274, 349, 397, 799, 1146, 1261, 1311, 1345
NlaIII CATG 5 cut(s) 293, 1165, 1262, 1491, 1539
NlaIV GGNNCC 2 cut(s) 216, 1484
NmeAIII GCCGAG 1 cut(s) 843
NmuCI GTSAC 5 cut(s) 940, 1052, 1096, 1135, 1420
NruI TCGCGA 2 cut(s) 843, 1350
NspV TTCGAA 1 cut(s) 56
PagI TCATGA 1 cut(s) 1258
PctI GAATGC 2 cut(s) 17, 576
PdmI GAANNNNTTC 1 cut(s) 1013
PfeI GAWTC 4 cut(s) 153, 364, 826, 1234
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 4 cut(s) 325, 328, 331, 1561
Ple19I CGATCG 1 cut(s) 1348
PleI GAGTC 3 cut(s) 363, 1216, 1312
PpsI GAGTC 3 cut(s) 363, 1216, 1312
PshAI GACNNNNGTC 1 cut(s) 636
PsiI TTATAA 1 cut(s) 413
Psp6I CCWGG 3 cut(s) 594, 671, 991
PspFI CCCAGC 2 cut(s) 22, 927
PspGI CCWGG 3 cut(s) 594, 671, 991
PspN4I GGNNCC 2 cut(s) 216, 1484
PspPI GGNCC 4 cut(s) 450, 533, 631, 995
PvuI CGATCG 1 cut(s) 1348
RruI TCGCGA 2 cut(s) 843, 1350
RsaI GTAC 2 cut(s) 1037, 1277
RsaNI GTAC 2 cut(s) 1036, 1276
SaqAI TTAA 4 cut(s) 132, 1122, 1458, 1621
SatI GCNGC 4 cut(s) 324, 327, 330, 1560
Sau3AI GATC 8 cut(s) 274, 349, 397, 799, 1146, 1261, 1311, 1345
Sau96I GGNCC 4 cut(s) 450, 533, 631, 995
SchI GAGTC 3 cut(s) 364, 1216, 1312
ScrFI CCNGG 5 cut(s) 477, 478, 596, 673, 993
SduI GDGCHC 2 cut(s) 928, 1604
SfaNI GCATC 1 cut(s) 1318
SfcI CTRYAG 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 56
SinI GGWCC 3 cut(s) 533, 631, 995
SmaI CCCGGG 1 cut(s) 478
SpeI ACTAGT 1 cut(s) 1376
SsiI CCGC 1 cut(s) 1193
SspI AATATT 1 cut(s) 1475
SspMI CTAG 3 cut(s) 659, 1370, 1377
StyD4I CCNGG 5 cut(s) 475, 476, 594, 671, 991
StyI CCWWGG 3 cut(s) 1425, 1487, 1535
TaaI ACNGT 7 cut(s) 246, 638, 707, 1287, 1496, 1585, 1597
TaiI ACGT 1 cut(s) 1089
TaqI TCGA 6 cut(s) 56, 282, 687, 1145, 1344, 1391
TatI WGTACW 1 cut(s) 1275
TfiI GAWTC 4 cut(s) 153, 364, 826, 1234
Tru1I TTAA 4 cut(s) 132, 1122, 1458, 1621
Tru9I TTAA 4 cut(s) 132, 1122, 1458, 1621
TscAI CASTG 4 cut(s) 641, 712, 1588, 1602
TseFI GTSAC 5 cut(s) 940, 1052, 1096, 1135, 1420
TseI GCWGC 4 cut(s) 323, 326, 329, 1559
Tsp45I GTSAC 5 cut(s) 940, 1052, 1096, 1135, 1420
TspDTI ATGAA 5 cut(s) 577, 726, 807, 926, 1425
TspGWI ACGGA 2 cut(s) 20, 38
TspMI CCCGGG 1 cut(s) 476
TspRI CASTG 4 cut(s) 641, 712, 1588, 1602
Van91I CCANNNNNTGG 1 cut(s) 73
VpaK11BI GGWCC 3 cut(s) 533, 631, 995
XapI RAATTY 7 cut(s) 145, 298, 584, 713, 867, 1166, 1188
XcmI CCANNNNNNNNNTGG 1 cut(s) 1494
XmaI CCCGGG 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 1013
XspI CTAG 3 cut(s) 659, 1370, 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.