Rroxscaffold_7G00169770

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000131
Physical Location & Seq
Reverse (-)
10331899 .. 10333957
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169770.1

Sequence Viewer

Length: 699 bp
ATGCATATAGATGTAGCAGATGAAACTTTGAAGTCAATAAAACCTCATGAAGTAGTACATTTTGTTGATTTTGTTAGAAAGTTATATCCACTACCACCATGGAAATCACAACATCGAGGGAAACGCGAAATACCGGCCACCCCAACCATGACACAGCTATCCCGAGCAGGGATCAGGTTTAAGGACGGATCGAAAACAAATATGTTTGATGTGAAGTTCGAAAAAGGGTTTCTAGCAATGCCAAAACTCACCATAAGTGATCAAACAGAGGTTACAATAACTAATCTCATTGCCTTTGAACAAAGCCAATGCGAGGACCAGGAGAAGTACATAAATGATTATTTCTTCTTCTTAAACGGTCTTGTAAAAACCCCTCAAGATGTTAAATTGCTTGCTGATCGTGGAATTCTTGACAATAAGCTAGGTGACAACAAAAAAGGCTGTGCTCTGATTAAGAACCTCGTGGATGGGGTGGTGGACTACTCCAAGGACTACTTCTATTTCATCACTCTTTGCGATGACCTGAACAAGTACTACAATACGGGTCGTCACCAATGGAAGGAATACTTGGTCACGCACTTTTTCAACTCTCCTTGGGCAACTAAAGAAATCATTGCTGCAGTTATTTTCCTCTTTCTCACTCTCATACAGACTGTGTTCTCTATCATGTCTTACTGTCACGACCTCGGTAAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

232

Amino Acids

26.95

Weight (kDa)

8.22

Isoelectric Point (pI)

30.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 12 - 213 2.6e-51 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 126
AclWI GGATC 2 cut(s) 179, 196
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 405
AfaI GTAC 3 cut(s) 57, 329, 533
AfiI CCNNNNNNNGG 3 cut(s) 168, 313, 559
AgsI TTSAA 3 cut(s) 31, 299, 586
AjnI CCWGG 1 cut(s) 318
AjuI GAANNNNNNNTTGG 4 cut(s) 479, 511, 551, 583
AluBI AGCT 2 cut(s) 157, 421
AluI AGCT 2 cut(s) 157, 421
Alw21I GWGCWC 1 cut(s) 448
AlwI GGATC 2 cut(s) 179, 196
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 316
AsuHPI GGTGA 3 cut(s) 241, 437, 542
AsuII TTCGAA 1 cut(s) 219
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 316
BauI CACGAG 1 cut(s) 461
Bbv12I GWGCWC 1 cut(s) 448
BbvI GCAGC 1 cut(s) 604
BccI CCATC 1 cut(s) 461
BciT130I CCWGG 1 cut(s) 320
BclI TGATCA 1 cut(s) 259
BfaI CTAG 2 cut(s) 233, 422
BfmI CTRYAG 1 cut(s) 618
BisI GCNGC 1 cut(s) 618
BlsI GCNGC 1 cut(s) 619
BmcAI AGTACT 1 cut(s) 533
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 320
Bpu14I TTCGAA 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 98, 486, 593, 685
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 313, 559
Bse118I RCCGGY 1 cut(s) 133
Bse3DI GCAATG 3 cut(s) 243, 288, 612
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 4 cut(s) 98, 486, 593, 685
BseGI GGATG 1 cut(s) 472
BseLI CCNNNNNNNGG 3 cut(s) 168, 313, 559
BseMI GCAATG 3 cut(s) 243, 288, 612
BseXI GCAGC 1 cut(s) 604
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 448
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 3 cut(s) 168, 313, 559
BsnI GGCC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 4 cut(s) 171, 188, 259, 397
Bsp19I CCATGG 1 cut(s) 98
BspANI GGCC 1 cut(s) 137
BspFNI CGCG 1 cut(s) 126
BspHI TCATGA 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 622
BspPI GGATC 2 cut(s) 179, 196
BspT104I TTCGAA 1 cut(s) 219
BsrDI GCAATG 3 cut(s) 243, 288, 612
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 4 cut(s) 98, 486, 593, 685
BssMI GATC 4 cut(s) 171, 188, 259, 397
BssSI CACGAG 1 cut(s) 461
BssT1I CCWWGG 3 cut(s) 98, 486, 593
Bst2BI CACGAG 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 3 cut(s) 359, 655, 677
BstBI TTCGAA 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 393
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 472
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 4 cut(s) 174, 191, 262, 400
BstMBI GATC 4 cut(s) 171, 188, 259, 397
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 318
BstSFI CTRYAG 1 cut(s) 618
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 604
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 98
BtgZI GCGATG 1 cut(s) 531
BtsCI GGATG 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 393
CciI TCATGA 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 3 cut(s) 56, 328, 532
CviAII CATG 4 cut(s) 47, 99, 148, 667
CviJI RGCY 5 cut(s) 137, 157, 306, 421, 441
CviKI_1 RGCY 5 cut(s) 137, 157, 306, 421, 441
CviQI GTAC 3 cut(s) 56, 328, 532
DpnI GATC 4 cut(s) 173, 190, 261, 399
DpnII GATC 4 cut(s) 171, 188, 259, 397
EaeI YGGCCR 1 cut(s) 135
Eco130I CCWWGG 3 cut(s) 98, 486, 593
Eco47I GGWCC 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 3 cut(s) 98, 486, 593
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 98, 486, 593
FaeI CATG 4 cut(s) 50, 102, 151, 670
FalI AAGNNNNNCTT 4 cut(s) 479, 511, 551, 583
FatI CATG 4 cut(s) 46, 98, 147, 666
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 618
FokI GGATG 1 cut(s) 479
Fsp4HI GCNGC 1 cut(s) 618
FspBI CTAG 2 cut(s) 233, 422
GluI GCNGC 1 cut(s) 618
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 134
Hin1II CATG 4 cut(s) 50, 102, 151, 670
HpaII CCGG 1 cut(s) 134
HphI GGTGA 3 cut(s) 241, 437, 542
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 1 cut(s) 450
Hpy188III TCNNGA 5 cut(s) 47, 162, 377, 410, 680
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 3 cut(s) 359, 655, 677
HpyCH4V TGCA 2 cut(s) 4, 620
Hsp92II CATG 4 cut(s) 50, 102, 151, 670
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 4 cut(s) 171, 188, 259, 397
LpnPI CCDG 6 cut(s) 147, 153, 160, 305, 332, 536
Lsp1109I GCAGC 1 cut(s) 604
MaeI CTAG 2 cut(s) 233, 422
MaeIII GTNAC 5 cut(s) 271, 425, 548, 571, 677
MalI GATC 4 cut(s) 173, 190, 261, 399
MboI GATC 4 cut(s) 171, 188, 259, 397
MboII GAAGA 2 cut(s) 337, 340
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 2 cut(s) 386, 405
MnlI CCTC 9 cut(s) 54, 110, 262, 307, 384, 470, 641, 687, 695
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 180, 353, 384, 453
MslI CAYNNNNRTG 1 cut(s) 9
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 1 cut(s) 126
NcoI CCATGG 1 cut(s) 98
NdeII GATC 4 cut(s) 171, 188, 259, 397
NlaIII CATG 4 cut(s) 50, 102, 151, 670
NmuCI GTSAC 4 cut(s) 425, 548, 571, 677
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 219
PagI TCATGA 1 cut(s) 46
PkrI GCNGC 1 cut(s) 619
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspPI GGNCC 1 cut(s) 316
PsrI GAACNNNNNNTAC 2 cut(s) 518, 550
PstI CTGCAG 1 cut(s) 622
RsaI GTAC 3 cut(s) 57, 329, 533
RsaNI GTAC 3 cut(s) 56, 328, 532
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 4 cut(s) 180, 353, 384, 453
SatI GCNGC 1 cut(s) 618
Sau3AI GATC 4 cut(s) 171, 188, 259, 397
Sau96I GGNCC 1 cut(s) 316
ScaI AGTACT 1 cut(s) 533
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 1 cut(s) 448
SfcI CTRYAG 1 cut(s) 618
SfuI TTCGAA 1 cut(s) 219
SinI GGWCC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 375
SmoI CTYRAG 1 cut(s) 375
Sse9I AATT 2 cut(s) 386, 405
SspMI CTAG 2 cut(s) 233, 422
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 3 cut(s) 98, 486, 593
TaaI ACNGT 3 cut(s) 359, 655, 677
TaqI TCGA 3 cut(s) 115, 191, 219
TasI AATT 2 cut(s) 386, 405
TatI WGTACW 3 cut(s) 55, 327, 531
Tru1I TTAA 4 cut(s) 180, 353, 384, 453
Tru9I TTAA 4 cut(s) 180, 353, 384, 453
TseFI GTSAC 4 cut(s) 425, 548, 571, 677
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 4 cut(s) 425, 548, 571, 677
TspDTI ATGAA 3 cut(s) 36, 63, 493
TspGWI ACGGA 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 1 cut(s) 405
XcmI CCANNNNNNNNNTGG 1 cut(s) 96
XspI CTAG 2 cut(s) 233, 422
ZrmI AGTACT 1 cut(s) 533
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.