Rmu_sc0007115.1_g000014

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007115.1
OG0000131
Physical Location & Seq
Reverse (-)
42820 .. 43815
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007115.1_g000014.1.cds

Sequence Viewer

Length: 996 bp
ctgcgcagttgttacattgagactattgagcttgatagtgatgaatttgctagaatcgttcttgtggatgccgcattcatcattgaagtcttactgaggtcctattatggtcatttggtagatgaagatgattgcattttccgaagaccaagattaatagtggatctattgcctgacatgttgttacttgaaaatcaattgcctttctttattcttgaggatctttgcccagactttattgatttaagctccggtggaacttccgagaggctttcaatggtctttctctctctccaactcttacataaaatgaaagtatcgggtatagaaggaactgcgcaggaaaatatggtcaatatacgttctcaacaagtaaaagtaaaacatcttcttgatctgttgagaacgttattgatactaccaatttcaaaatcacaaattagagggacttttcaacattttcctagcacgacaaagctacaccaagcaggagtgaagtttaaagttggaccaagcaaaaacttgttcagcatacgattcactaatgggattttggaaattccaaagttaactattacggataacacagagctcataatgagaaatgttgttgcctacgagcaatgtgaatttccctttgaacttcacataagtgcttatgttgtcatccttgattattttgtagatactgcaaaagatgtggagttacttgtcgattctggtattattaaaaattgtctatgtgacaacaacgaggtttctcgtttgatcaacagtctcaatagtggagttgcactgtcgcctggtgaattttatttctctaccgtttctcaaaaactgagcgagtattgcgatgtgaggtggcataaaagcatagcaaatttgaggcaaaattatttcaacacaccttggcgtaccatctctgtggttgcagctggtactttccttgtactcacttttgttcaaactgtgtgctctgttatgtcagttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

331

Amino Acids

37.56

Weight (kDa)

5.43

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 5, 339
AciI CCGC 1 cut(s) 72
AclI AACGTT 1 cut(s) 407
AclWI GGATC 2 cut(s) 171, 228
AcsI RAATTY 5 cut(s) 44, 558, 629, 809, 880
AfaI GTAC 3 cut(s) 916, 940, 951
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 8 cut(s) 86, 191, 276, 429, 455, 641, 901, 965
AjnI CCWGG 1 cut(s) 802
AleI CACNNNNGTG 1 cut(s) 651
AluBI AGCT 5 cut(s) 31, 249, 478, 592, 935
AluI AGCT 5 cut(s) 31, 249, 478, 592, 935
Alw21I GWGCWC 2 cut(s) 594, 977
Alw26I GTCTC 2 cut(s) 14, 782
AlwI GGATC 2 cut(s) 171, 228
ApeKI GCWGC 1 cut(s) 932
ApoI RAATTY 5 cut(s) 44, 558, 629, 809, 880
AseI ATTAAT 1 cut(s) 155
AspLEI GCGC 2 cut(s) 6, 340
AspS9I GGNCC 2 cut(s) 99, 509
AsuHPI GGTGA 1 cut(s) 818
AvaII GGWCC 2 cut(s) 99, 509
BanII GRGCYC 1 cut(s) 594
BarI GAAGNNNNNNTAC 2 cut(s) 372, 404
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 2 cut(s) 594, 977
BbvI GCAGC 1 cut(s) 944
BccI CCATC 1 cut(s) 926
BciT130I CCWGG 1 cut(s) 804
BclI TGATCA 1 cut(s) 768
BcoDI GTCTC 2 cut(s) 14, 782
BfaI CTAG 2 cut(s) 51, 465
BisI GCNGC 2 cut(s) 72, 933
BlsI GCNGC 2 cut(s) 73, 934
Bme1390I CCNGG 1 cut(s) 804
Bme18I GGWCC 2 cut(s) 99, 509
BmgT120I GGNCC 2 cut(s) 99, 509
BmrFI CCNGG 1 cut(s) 804
BmsI GCATC 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 908
BsaWI WCCGGW 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 629
BseBI CCWGG 1 cut(s) 804
BseDI CCNNGG 1 cut(s) 908
BseGI GGATG 2 cut(s) 73, 666
BseMI GCAATG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 86, 830
BseXI GCAGC 1 cut(s) 944
BsiHKAI GWGCWC 2 cut(s) 594, 977
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 460
BsmAI GTCTC 2 cut(s) 14, 782
BsmFI GGGAC 1 cut(s) 460
BsmI GAATGC 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 594, 977
Bsp143I GATC 4 cut(s) 163, 220, 394, 768
BspACI CCGC 1 cut(s) 72
BspCNI CTCAG 2 cut(s) 87, 831
BspPI GGATC 2 cut(s) 171, 228
BsrDI GCAATG 1 cut(s) 629
BssECI CCNNGG 1 cut(s) 908
BssMI GATC 4 cut(s) 163, 220, 394, 768
BssT1I CCWWGG 1 cut(s) 908
Bst2UI CCWGG 1 cut(s) 804
Bst4CI ACNGT 4 cut(s) 776, 798, 826, 970
BstDEI CTNAG 2 cut(s) 95, 839
BstF5I GGATG 2 cut(s) 73, 666
BstHHI GCGC 2 cut(s) 6, 340
BstKTI GATC 4 cut(s) 166, 223, 397, 771
BstMAI GTCTC 2 cut(s) 14, 782
BstMBI GATC 4 cut(s) 163, 220, 394, 768
BstMWI GCNNNNNNNGC 1 cut(s) 849
BstNI CCWGG 1 cut(s) 804
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 802
BstV1I GCAGC 1 cut(s) 944
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 2 cut(s) 163, 220
BstXI CCANNNNNNTGG 1 cut(s) 925
BstYI RGATCY 2 cut(s) 163, 220
BtgZI GCGATG 1 cut(s) 867
BtsCI GGATG 2 cut(s) 73, 666
BtsIMutI CAGTG 1 cut(s) 794
CfoI GCGC 2 cut(s) 6, 340
Cfr13I GGNCC 2 cut(s) 99, 509
Csp6I GTAC 3 cut(s) 915, 939, 950
CspCI CAANNNNNGTGG 2 cut(s) 681, 716
CviAII CATG 1 cut(s) 178
CviJI RGCY 6 cut(s) 31, 249, 271, 478, 592, 935
CviKI_1 RGCY 6 cut(s) 31, 249, 271, 478, 592, 935
CviQI GTAC 3 cut(s) 915, 939, 950
DdeI CTNAG 2 cut(s) 95, 839
DpnI GATC 4 cut(s) 165, 222, 396, 770
DpnII GATC 4 cut(s) 163, 220, 394, 768
DraI TTTAAA 1 cut(s) 502
Ecl136II GAGCTC 1 cut(s) 592
Eco130I CCWWGG 1 cut(s) 908
Eco24I GRGCYC 1 cut(s) 594
Eco47I GGWCC 2 cut(s) 99, 509
Eco53kI GAGCTC 1 cut(s) 592
EcoICRI GAGCTC 1 cut(s) 592
EcoO109I RGGNCCY 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 802
EcoT14I CCWWGG 1 cut(s) 908
EcoT38I GRGCYC 1 cut(s) 594
ErhI CCWWGG 1 cut(s) 908
FaeI CATG 1 cut(s) 181
FaqI GGGAC 1 cut(s) 460
FatI CATG 1 cut(s) 177
FbaI TGATCA 1 cut(s) 768
Fnu4HI GCNGC 2 cut(s) 72, 933
FokI GGATG 2 cut(s) 80, 653
FriOI GRGCYC 1 cut(s) 594
Fsp4HI GCNGC 2 cut(s) 72, 933
FspBI CTAG 2 cut(s) 51, 465
FspI TGCGCA 2 cut(s) 5, 339
GlaI GCGC 2 cut(s) 5, 339
GluI GCNGC 2 cut(s) 72, 933
HapII CCGG 1 cut(s) 252
HhaI GCGC 2 cut(s) 6, 340
Hin1II CATG 1 cut(s) 181
Hin6I GCGC 2 cut(s) 4, 338
HinP1I GCGC 2 cut(s) 4, 338
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HinfI GANTC 3 cut(s) 54, 537, 716
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 818
Hpy166II GTNNAC 1 cut(s) 570
Hpy188I TCNGA 2 cut(s) 143, 265
Hpy188III TCNNGA 2 cut(s) 215, 392
Hpy8I GTNNAC 1 cut(s) 570
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 4 cut(s) 776, 798, 826, 970
HpyCH4IV ACGT 2 cut(s) 361, 407
HpyCH4V TGCA 4 cut(s) 135, 692, 794, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 849
HpyF3I CTNAG 2 cut(s) 95, 839
HpySE526I ACGT 2 cut(s) 361, 407
Hsp92II CATG 1 cut(s) 181
HspAI GCGC 2 cut(s) 4, 338
Ksp22I TGATCA 1 cut(s) 768
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 4 cut(s) 163, 220, 394, 768
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 9 cut(s) 186, 243, 265, 326, 474, 705, 789, 816, 921
Lsp1109I GCAGC 1 cut(s) 944
LweI GCATC 1 cut(s) 58
MaeI CTAG 2 cut(s) 51, 465
MaeII ACGT 2 cut(s) 361, 407
MaeIII GTNAC 4 cut(s) 11, 183, 705, 743
MalI GATC 4 cut(s) 165, 222, 396, 770
MboI GATC 4 cut(s) 163, 220, 394, 768
MboII GAAGA 3 cut(s) 137, 156, 380
MfeI CAATTG 1 cut(s) 197
MflI RGATCY 2 cut(s) 163, 220
MhlI GDGCHC 2 cut(s) 594, 977
MmeI TCCRAC 2 cut(s) 319, 487
MnlI CCTC 7 cut(s) 90, 211, 261, 437, 748, 852, 879
MseI TTAA 6 cut(s) 155, 245, 501, 569, 729, 994
MslI CAYNNNNRTG 2 cut(s) 651, 923
MspA1I CMGCKG 1 cut(s) 935
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 804
MunI CAATTG 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 1 cut(s) 804
MwoI GCNNNNNNNGC 1 cut(s) 849
NdeII GATC 4 cut(s) 163, 220, 394, 768
NlaIII CATG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 743
NsbI TGCGCA 2 cut(s) 5, 339
NspI RCATGY 1 cut(s) 181
OliI CACNNNNGTG 1 cut(s) 651
PciI ACATGT 1 cut(s) 177
PctI GAATGC 1 cut(s) 74
PfeI GAWTC 3 cut(s) 54, 537, 716
PkrI GCNGC 2 cut(s) 73, 934
PpuMI RGGWCCY 1 cut(s) 99
PscI ACATGT 1 cut(s) 177
PshBI ATTAAT 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 594
Psp1406I AACGTT 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 802
PspGI CCWGG 1 cut(s) 802
PspPI GGNCC 2 cut(s) 99, 509
PspPPI RGGWCCY 1 cut(s) 99
PsuI RGATCY 2 cut(s) 163, 220
PvuII CAGCTG 1 cut(s) 935
RsaI GTAC 3 cut(s) 916, 940, 951
RsaNI GTAC 3 cut(s) 915, 939, 950
RseI CAYNNNNRTG 2 cut(s) 651, 923
SacI GAGCTC 1 cut(s) 594
SaqAI TTAA 6 cut(s) 155, 245, 501, 569, 729, 994
SatI GCNGC 2 cut(s) 72, 933
Sau3AI GATC 4 cut(s) 163, 220, 394, 768
Sau96I GGNCC 2 cut(s) 99, 509
ScrFI CCNGG 1 cut(s) 804
SduI GDGCHC 2 cut(s) 594, 977
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 2 cut(s) 99, 509
SmiMI CAYNNNNRTG 2 cut(s) 651, 923
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SsiI CCGC 1 cut(s) 72
SspMI CTAG 2 cut(s) 51, 465
SstI GAGCTC 1 cut(s) 594
StyD4I CCNGG 1 cut(s) 802
StyI CCWWGG 1 cut(s) 908
TaaI ACNGT 4 cut(s) 776, 798, 826, 970
TaiI ACGT 2 cut(s) 364, 410
TaqI TCGA 1 cut(s) 714
TatI WGTACW 1 cut(s) 949
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 3 cut(s) 54, 537, 716
Tru1I TTAA 6 cut(s) 155, 245, 501, 569, 729, 994
Tru9I TTAA 6 cut(s) 155, 245, 501, 569, 729, 994
TscAI CASTG 1 cut(s) 801
TseFI GTSAC 1 cut(s) 743
TseI GCWGC 1 cut(s) 932
Tsp45I GTSAC 1 cut(s) 743
TspDTI ATGAA 4 cut(s) 57, 67, 138, 326
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 1 cut(s) 801
VpaK11BI GGWCC 2 cut(s) 99, 509
VspI ATTAAT 1 cut(s) 155
XapI RAATTY 5 cut(s) 44, 558, 629, 809, 880
XceI RCATGY 1 cut(s) 181
XspI CTAG 2 cut(s) 51, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.