Rorug05G0292700

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000131
Physical Location & Seq
Forward (+)
33757328 .. 33763435
6108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0292700.1

Sequence Viewer

Length: 1587 bp
ATGGAGCTCTGCCTCACTGCCATCAATGGTGGCTCCACAGCGGTCCTCAACTCAAACCCATCACGCTCCTCACCCTCCCTTCTTCTCCCCAAAAACCCTTCTTCTCTCCAACTCTACACTTCTCGCAGACCCCCCTCTCTTTCCCGCCAATTCCACTCTCTCCAATTCGCGGTCTCGTCCTCTTCTTCCACCGCTACCACCTCCGAGATAGACCAACTTCCGGCCGACATCAGCGTCACAGAGACCCAACAACCCAATTCCAGAGTGAAGTTGAGCATACAAGTGCCGCCGGAGGTCTGCGACGACTGTTACAAAAAGGTTATAGTCGAGTTCATGAAGCAAGCAAAGGTTCCGGGGTTTCGGCCTGGAAAGAGGGTGCCGGAGAGTATTCTTGTGAGTTATGTAGGGAAGAAAAGTGTAGACAAGGCTACCATTGAGTCTATTCTGAGGAGGACCCTTCCACATGCCATGTCTTCAATGACCGGCACGGCTTTGACAGACTCAGTCAGCATTCTGACCAAATTTTCTGAGCTAGAGCAGGCGTATTCTTCTGGCACCTCTCTCAGATATGATGTGATTGTTGATGTAGCACCAGAAGTGAAGTGGATTCCTGAGAACGGATACAAGAATTTGAAGGTCACCGTTGAGATAGACAGTGACATAGATGCACAAAAGGTTTCTGAACAAGAATTAAGACGCCGTCACAAGTCCCTAGGGGCTTTAAGAATTGTAACTGACAGAGGACTACAGGTTGGCGATCTTGTCGTCCTTGATATATCTGCAACAACAATAAATCAAGACGAATCAAATGTTCAAAATATTCCATCTGCAGAGAGTAAAGGTTATCATTTTGATACGGAAGATGGTGATAAACTAATTCCCGGTTTCCTTGATTCGATAATTGGAATCCAACGAGGTGAAACAAAGTCTTTTCCTCTTGTATTTCCTGAATCATGGGCACAGGAAAATCTCCAAGGAATTCATGCTCAATTCAATGTTGAATGCAAGGAGTTATTTTACAGAGATTTACCCGAATTGGATGACTCCCTTGCTCCTAAGCTTCTTCCTGGATGCACCACCCTGGAACAGGTCAAGGAATCACTCTTGCAAAAATGCCAGGAACTAGAGCAAACAGCTAGAGAGCAAGCAGCAGATAATGCCATTCTCGATCAGCTTTGCAAGATGGTAGAGGTTGATATTCCTCAATCCTTGTTTGAGGAACAAGGTAGGCAGCTTTATGGAGCCAAACTTTTAGAGATACAGGCAAATGTAAAAATAAATGAAGAGCAACTGGCTACACTGTCAGGTAAGAAAGCAGTGGATGAGTACCTTCTACACCAGAAGGAGAATATCATGAATATGATAAAACAGAGTATGGCTGTTGGAGACATATTTAAACGGGAAAAGTTGCAGTTTTCAACAGACGATCTTGTGAAAGAGGTCGAAAATTCCATTGCTGAATTCAAACGTCAAAAACAGGATTATGATGAGGAACGTGTTAAGGGACAGGTCCAAGAAATTTTAGAGGGAGCAAAGGTGCTTGAATGGTTAAGAGAACATTCAGAGATTCAGTACATAACTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

528

Amino Acids

59.11

Weight (kDa)

5.07

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trigger_N PF05697 78 - 228 6.8e-21 Bacterial trigger factor protein (TF)
Trigger_C PF05698 360 - 517 7.3e-18 Bacterial trigger factor protein (TF) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AccB1I GGYRCC 2 cut(s) 376, 554
AccI GTMKAC 1 cut(s) 420
AccII CGCG 1 cut(s) 170
AciI CCGC 5 cut(s) 41, 145, 170, 192, 287
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 6 cut(s) 521, 628, 978, 1447, 1460, 1518
AcyI GRCGYC 1 cut(s) 697
AfaI GTAC 2 cut(s) 1328, 1574
AfiI CCNNNNNNNGG 4 cut(s) 169, 220, 617, 1087
AflIII ACRYGT 1 cut(s) 1495
AgsI TTSAA 8 cut(s) 477, 634, 815, 994, 1001, 1419, 1465, 1544
AjnI CCWGG 4 cut(s) 364, 1066, 1080, 1116
AluBI AGCT 6 cut(s) 7, 532, 1060, 1136, 1174, 1234
AluI AGCT 6 cut(s) 7, 532, 1060, 1136, 1174, 1234
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 3 cut(s) 178, 236, 1380
AoxI GGCC 2 cut(s) 222, 362
ApeKI GCWGC 2 cut(s) 1148, 1231
ApoI RAATTY 6 cut(s) 521, 628, 978, 1447, 1460, 1518
AspA2I CCTAGG 1 cut(s) 712
AspS9I GGNCC 3 cut(s) 43, 453, 1510
AsuC2I CCSGG 2 cut(s) 354, 882
AsuHPI GGTGA 4 cut(s) 63, 631, 878, 929
AvaII GGWCC 3 cut(s) 43, 453, 1510
AvrII CCTAGG 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 961
BanI GGYRCC 2 cut(s) 376, 554
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 1160, 1243
BccI CCATC 5 cut(s) 29, 67, 832, 857, 1177
BceAI ACGGC 2 cut(s) 504, 684
BciT130I CCWGG 4 cut(s) 366, 1068, 1082, 1118
BciVI GTATCC 1 cut(s) 614
BcnI CCSGG 2 cut(s) 354, 882
BcoDI GTCTC 3 cut(s) 178, 236, 1380
BfaI CTAG 5 cut(s) 533, 713, 1124, 1137, 1585
BfmI CTRYAG 2 cut(s) 746, 828
BfuI GTATCC 1 cut(s) 614
BisI GCNGC 3 cut(s) 287, 1149, 1232
BlnI CCTAGG 1 cut(s) 712
BlsI GCNGC 3 cut(s) 288, 1150, 1233
Bme1390I CCNGG 6 cut(s) 354, 366, 882, 1068, 1082, 1118
Bme18I GGWCC 3 cut(s) 43, 453, 1510
BmgT120I GGNCC 3 cut(s) 43, 453, 1510
BmiI GGNNCC 6 cut(s) 34, 351, 378, 455, 556, 1243
BmrFI CCNGG 6 cut(s) 354, 366, 882, 1068, 1082, 1118
BmsI GCATC 2 cut(s) 655, 1061
BpiI GAAGAC 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 1056
BpuMI CCSGG 2 cut(s) 354, 882
BsaHI GRCGYC 1 cut(s) 697
BsaI GGTCTC 2 cut(s) 178, 236
BsaJI CCNNGG 4 cut(s) 353, 712, 973, 1080
BsaXI ACNNNNNCTCC 2 cut(s) 1521, 1551
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 220, 617, 1087
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 1 cut(s) 1296
Bse3DI GCAATG 1 cut(s) 1452
BseBI CCWGG 4 cut(s) 366, 1068, 1082, 1118
BseDI CCNNGG 4 cut(s) 353, 712, 973, 1080
BseGI GGATG 3 cut(s) 1045, 1076, 1327
BseLI CCNNNNNNNGG 4 cut(s) 169, 220, 617, 1087
BseMI GCAATG 1 cut(s) 1452
BseMII CTCAG 5 cut(s) 437, 516, 519, 577, 603
BseNI ACTGG 1 cut(s) 1296
BseRI GAGGAG 2 cut(s) 58, 463
BseSI GKGCMC 1 cut(s) 961
BseX3I CGGCCG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 1160, 1243
Bsh1236I CGCG 1 cut(s) 170
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 2 cut(s) 224, 364
BshNI GGYRCC 2 cut(s) 376, 554
BsiEI CGRYCG 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 6 cut(s) 221, 290, 353, 380, 483, 882
BslFI GGGAC 2 cut(s) 694, 1518
BslI CCNNNNNNNGG 4 cut(s) 169, 220, 617, 1087
BsmAI GTCTC 3 cut(s) 178, 236, 1380
BsmFI GGGAC 2 cut(s) 694, 1518
BsmI GAATGC 2 cut(s) 510, 1007
BsnI GGCC 2 cut(s) 224, 364
Bso31I GGTCTC 2 cut(s) 178, 236
Bsp1286I GDGCHC 2 cut(s) 9, 961
Bsp143I GATC 3 cut(s) 757, 1168, 1426
BspACI CCGC 5 cut(s) 41, 145, 170, 192, 287
BspANI GGCC 2 cut(s) 224, 364
BspCNI CTCAG 5 cut(s) 438, 515, 520, 576, 604
BspFNI CGCG 1 cut(s) 170
BspHI TCATGA 2 cut(s) 333, 1353
BspLI GGNNCC 6 cut(s) 34, 351, 378, 455, 556, 1243
BspMAI CTGCAG 1 cut(s) 832
BspQI GCTCTTC 1 cut(s) 1278
BspT107I GGYRCC 2 cut(s) 376, 554
BspTNI GGTCTC 2 cut(s) 178, 236
BsrDI GCAATG 1 cut(s) 1452
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 1 cut(s) 1296
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 4 cut(s) 353, 712, 973, 1080
BssMI GATC 3 cut(s) 757, 1168, 1426
BssNI GRCGYC 1 cut(s) 697
BssT1I CCWWGG 2 cut(s) 712, 973
Bst2UI CCWGG 4 cut(s) 366, 1068, 1082, 1118
Bst4CI ACNGT 4 cut(s) 308, 643, 656, 1302
Bst6I CTCTTC 2 cut(s) 187, 1278
BstACI GRCGYC 1 cut(s) 697
BstAPI GCANNNNNTGC 1 cut(s) 1157
BstC8I GCNNGC 3 cut(s) 342, 540, 1146
BstDEI CTNAG 6 cut(s) 446, 502, 528, 563, 612, 1056
BstEII GGTNACC 1 cut(s) 637
BstENI CCTNNNNNAGG 1 cut(s) 1085
BstF5I GGATG 3 cut(s) 1045, 1076, 1327
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 3 cut(s) 760, 1171, 1429
BstMAI GTCTC 3 cut(s) 178, 236, 1380
BstMBI GATC 3 cut(s) 757, 1168, 1426
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 1157
BstNI CCWGG 4 cut(s) 366, 1068, 1082, 1118
BstNSI RCATGY 1 cut(s) 467
BstPI GGTNACC 1 cut(s) 637
BstSCI CCNGG 6 cut(s) 352, 364, 880, 1066, 1080, 1116
BstSFI CTRYAG 2 cut(s) 746, 828
BstSLI GKGCMC 1 cut(s) 961
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 1160, 1243
BstV2I GAAGAC 1 cut(s) 465
BstZI CGGCCG 1 cut(s) 222
BsuI GTATCC 1 cut(s) 614
BsuRI GGCC 2 cut(s) 224, 364
BtsCI GGATG 3 cut(s) 1045, 1076, 1327
BtsI GCAGTG 2 cut(s) 15, 1323
BtsIMutI CAGTG 4 cut(s) 15, 661, 1298, 1323
Cac8I GCNNGC 3 cut(s) 342, 540, 1146
CciI TCATGA 2 cut(s) 333, 1353
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 3 cut(s) 43, 453, 1510
CseI GACGC 2 cut(s) 223, 705
Csp6I GTAC 2 cut(s) 1327, 1573
CviAII CATG 6 cut(s) 334, 464, 469, 954, 983, 1354
CviQI GTAC 2 cut(s) 1327, 1573
DdeI CTNAG 6 cut(s) 446, 502, 528, 563, 612, 1056
DpnI GATC 3 cut(s) 759, 1170, 1428
DpnII GATC 3 cut(s) 757, 1168, 1426
DraI TTTAAA 1 cut(s) 1396
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 222
EagI CGGCCG 1 cut(s) 222
Eam1104I CTCTTC 2 cut(s) 187, 1278
EarI CTCTTC 2 cut(s) 187, 1278
Ecl136II GAGCTC 1 cut(s) 7
EclXI CGGCCG 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 712, 973
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 2 cut(s) 178, 236
Eco47I GGWCC 3 cut(s) 43, 453, 1510
Eco52I CGGCCG 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 7
Eco91I GGTNACC 1 cut(s) 637
EcoICRI GAGCTC 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 1085
EcoO109I RGGNCCY 1 cut(s) 453
EcoO65I GGTNACC 1 cut(s) 637
EcoRI GAATTC 2 cut(s) 978, 1460
EcoRII CCWGG 4 cut(s) 364, 1066, 1080, 1116
EcoT14I CCWWGG 2 cut(s) 712, 973
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 712, 973
FaeI CATG 6 cut(s) 337, 467, 472, 957, 986, 1357
FaqI GGGAC 2 cut(s) 694, 1518
FatI CATG 6 cut(s) 333, 463, 468, 953, 982, 1353
FauI CCCGC 1 cut(s) 152
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 3 cut(s) 287, 1149, 1232
FokI GGATG 3 cut(s) 1052, 1083, 1334
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 3 cut(s) 287, 1149, 1232
FspBI CTAG 5 cut(s) 533, 713, 1124, 1137, 1585
GluI GCNGC 3 cut(s) 287, 1149, 1232
HaeIII GGCC 2 cut(s) 224, 364
HapII CCGG 6 cut(s) 221, 290, 353, 380, 483, 882
HgaI GACGC 2 cut(s) 223, 705
Hin1I GRCGYC 1 cut(s) 697
Hin1II CATG 6 cut(s) 337, 467, 472, 957, 986, 1357
HindIII AAGCTT 1 cut(s) 1058
HpaII CCGG 6 cut(s) 221, 290, 353, 380, 483, 882
HphI GGTGA 4 cut(s) 63, 631, 878, 929
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 7 cut(s) 205, 447, 516, 529, 566, 682, 1564
Hpy188III TCNNGA 7 cut(s) 261, 334, 611, 797, 947, 1166, 1354
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 6 cut(s) 89, 108, 467, 628, 1336, 1340
HpyCH4III ACNGT 4 cut(s) 308, 643, 656, 1302
HpyCH4IV ACGT 2 cut(s) 1468, 1495
HpyCH4V TGCA 8 cut(s) 668, 782, 830, 1005, 1074, 1108, 1179, 1411
HpyF10VI GCNNNNNNNGC 1 cut(s) 1157
HpyF3I CTNAG 6 cut(s) 446, 502, 528, 563, 612, 1056
HpySE526I ACGT 2 cut(s) 1468, 1495
Hsp92I GRCGYC 1 cut(s) 697
Hsp92II CATG 6 cut(s) 337, 467, 472, 957, 986, 1357
Kzo9I GATC 3 cut(s) 757, 1168, 1426
LguI GCTCTTC 1 cut(s) 1278
LmnI GCTCC 6 cut(s) 4, 38, 71, 1057, 1241, 1529
Lsp1109I GCAGC 2 cut(s) 1160, 1243
LweI GCATC 2 cut(s) 655, 1061
MaeI CTAG 5 cut(s) 533, 713, 1124, 1137, 1585
MaeII ACGT 2 cut(s) 1468, 1495
MaeIII GTNAC 6 cut(s) 235, 308, 637, 656, 701, 730
MalI GATC 3 cut(s) 759, 1170, 1428
MboI GATC 3 cut(s) 757, 1168, 1426
MhlI GDGCHC 2 cut(s) 9, 961
MlyI GAGTC 3 cut(s) 446, 494, 1037
MmeI TCCRAC 3 cut(s) 133, 934, 1363
MseI TTAA 5 cut(s) 692, 722, 1395, 1500, 1550
MslI CAYNNNNRTG 2 cut(s) 281, 1358
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 6 cut(s) 221, 290, 353, 380, 483, 882
MspR9I CCNGG 6 cut(s) 354, 366, 882, 1068, 1082, 1118
Mva1269I GAATGC 2 cut(s) 510, 1007
MvaI CCWGG 4 cut(s) 366, 1068, 1082, 1118
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 1157
NciI CCSGG 2 cut(s) 354, 882
NdeII GATC 3 cut(s) 757, 1168, 1426
NlaIII CATG 6 cut(s) 337, 467, 472, 957, 986, 1357
NlaIV GGNNCC 6 cut(s) 34, 351, 378, 455, 556, 1243
NmuCI GTSAC 4 cut(s) 235, 637, 656, 701
NspI RCATGY 1 cut(s) 467
PagI TCATGA 2 cut(s) 333, 1353
PciSI GCTCTTC 1 cut(s) 1278
PctI GAATGC 2 cut(s) 510, 1007
PfeI GAWTC 7 cut(s) 607, 803, 893, 906, 950, 1097, 1567
PflFI GACNNNGTC 2 cut(s) 503, 699
PfoI TCCNGGA 1 cut(s) 1066
PkrI GCNGC 3 cut(s) 288, 1150, 1233
PleI GAGTC 3 cut(s) 445, 494, 1037
PpsI GAGTC 3 cut(s) 445, 494, 1037
PpuMI RGGWCCY 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 453
Psp6I CCWGG 4 cut(s) 364, 1066, 1080, 1116
PspEI GGTNACC 1 cut(s) 637
PspGI CCWGG 4 cut(s) 364, 1066, 1080, 1116
PspN4I GGNNCC 6 cut(s) 34, 351, 378, 455, 556, 1243
PspPI GGNCC 3 cut(s) 43, 453, 1510
PspPPI RGGWCCY 1 cut(s) 453
PstI CTGCAG 1 cut(s) 832
PsyI GACNNNGTC 2 cut(s) 503, 699
RsaI GTAC 2 cut(s) 1328, 1574
RsaNI GTAC 2 cut(s) 1327, 1573
RseI CAYNNNNRTG 2 cut(s) 281, 1358
SacI GAGCTC 1 cut(s) 9
SapI GCTCTTC 1 cut(s) 1278
SaqAI TTAA 5 cut(s) 692, 722, 1395, 1500, 1550
SatI GCNGC 3 cut(s) 287, 1149, 1232
Sau3AI GATC 3 cut(s) 757, 1168, 1426
Sau96I GGNCC 3 cut(s) 43, 453, 1510
SchI GAGTC 3 cut(s) 446, 494, 1037
ScrFI CCNGG 6 cut(s) 354, 366, 882, 1068, 1082, 1118
SduI GDGCHC 2 cut(s) 9, 961
SfaNI GCATC 2 cut(s) 655, 1061
SfcI CTRYAG 2 cut(s) 746, 828
SinI GGWCC 3 cut(s) 43, 453, 1510
SmiMI CAYNNNNRTG 2 cut(s) 281, 1358
SsiI CCGC 5 cut(s) 41, 145, 170, 192, 287
SspI AATATT 1 cut(s) 820
SspMI CTAG 5 cut(s) 533, 713, 1124, 1137, 1585
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 6 cut(s) 352, 364, 880, 1066, 1080, 1116
StyI CCWWGG 2 cut(s) 712, 973
TaaI ACNGT 4 cut(s) 308, 643, 656, 1302
TaiI ACGT 2 cut(s) 1471, 1498
TaqI TCGA 4 cut(s) 327, 896, 1167, 1443
TatI WGTACW 1 cut(s) 1572
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 7 cut(s) 607, 803, 893, 906, 950, 1097, 1567
Tru1I TTAA 5 cut(s) 692, 722, 1395, 1500, 1550
Tru9I TTAA 5 cut(s) 692, 722, 1395, 1500, 1550
TscAI CASTG 4 cut(s) 22, 661, 1305, 1323
TseFI GTSAC 4 cut(s) 235, 637, 656, 701
TseI GCWGC 2 cut(s) 1148, 1231
Tsp45I GTSAC 4 cut(s) 235, 637, 656, 701
TspDTI ATGAA 5 cut(s) 322, 350, 971, 1296, 1370
TspGWI ACGGA 2 cut(s) 633, 872
TspRI CASTG 4 cut(s) 22, 661, 1305, 1323
Tth111I GACNNNGTC 2 cut(s) 503, 699
VpaK11BI GGWCC 3 cut(s) 43, 453, 1510
XagI CCTNNNNNAGG 1 cut(s) 1085
XapI RAATTY 6 cut(s) 521, 628, 978, 1447, 1460, 1518
XceI RCATGY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 600
XmaJI CCTAGG 1 cut(s) 712
XmiI GTMKAC 1 cut(s) 420
XspI CTAG 5 cut(s) 533, 713, 1124, 1137, 1585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.