pycom854g00030

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000854
OG0000131
Physical Location & Seq
Reverse (-)
34083 .. 35375
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1050 bp
ATGGAAGGAAGCAACGAAGCTCCACATGACATCGAAAACCCTTACATTCGGATTCTATCTTCAATGAGTAGTGAGTTGGATGGCTTGCTTCCCTTGTCCAATTCGTGTTGTATCTACAGAGTTCCTGAAGAACTACGGCGTGTAAATGAAAAGGCCTACACACCTCAAGTAGTCTCTATAGGTCCGCTTCACCATGGCAGCAAAGGCTTAAAAGACATGGAAGAACACAAGAAGAGGTACCTACCTGACATGCTTTTGCTCGAAAATCAGCTGCCATTTTTCATTCTTGAGGATCTCTTTGCCACTGGGGAGGTGCTGGCGACGATGCCTTCAGTATTTGTCCTCTCTTCCATTTTCTGCATGGTATCAACGAGTTTATATGTAAAAATAGACGATTCGGGATCTTTTTCTAGTTTTCAAGTAGAGCATTTTGTTGATTTGATTAGAACTTTACATCTACCAACGGAGGAGGAGAACTCACAAAATCAAGGGCCATTCGAAACTCTACCTGTACCCAGCATGACGAAACTACACCAGGCTGGAGTCAAGTTTAAGGCAAGATCAAGCAATAATCTATTTGATATATGTTTCGAAGGCAGAAGTTTGGAAATTCCAAATCTATTAATACAGGATGACACGGAGCTTTTACTCCGAAACCTTGTTGCCTTTGAGCAATGCCATTGCGATTGCACCTACTTCAGTGATTATATCTTCCTCATGGATAATTTGGTGAACACCCCAAATGATGTGGAATTGCTTGTCAAGAATGGAATTGTTAAAACTCTGCTTGGTGACAACAATGAGGTATCTACTCTGATTAACAGCCTTGGCAAAGGTGTTACGCTTGACAAAGCATCATTCTATTATGCTACTCTTACAGCGGATCTCAACAACTACTACAAAAAGCCGTGGAACAAATGGAAGGCAGATCTGAAACAAAAACATTTCAACACACCCTGGACAACTATTTCTGTAATTGCTGCTGCTATGATCATCATACTCACTCTCATACAAACGGTGTGTTCTTTTTCCCAATGCGCTCAACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

350

Amino Acids

39.47

Weight (kDa)

5.16

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 38 - 81 8.5e-17 Plant protein of unknown function
DUF247 PF03140 83 - 334 8.5e-74 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31980 AT5G11290 AT5G11290
fragaria_vesca FvH4_2g29230 FvH4_2g29230 FvH4_2g29310 FvH4_2g29351 FvH4_2g29352 FvH4_2g29352 FvH4_2g29362 FvH4_2g29370 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29461 FvH4_2g29470 FvH4_2g29490 FvH4_2g29490 FvH4_2g29500 FvH4_2g29500 FvH4_2g29520 FvH4_2g33600 FvH4_3g29960 FvH4_5g20260 FvH4_7g25070
malus_domestica MD00G1144600.v1.1 MD07G1131600.v1.1 MD08G1146300.v1.1 MD08G1146400.v1.1 MD08G1146500.v1.1 MD08G1146600.v1.1 MD15G1035400.v1.1 MD15G1100600.v1.1 MD15G1100700.v1.1 MD15G1101400.v1.1 MD15G1101800.v1.1 MD15G1118600.v1.1 MD15G1119800.v1.1 MD15G1121700.v1.1 MD15G1121800.v1.1 MD15G1122100.v1.1 MD15G1122400.v1.1 MD15G1122700.v1.1 MD15G1123000.v1.1
prunus_persica Prupe.1G474700_v2.0.a1 Prupe.1G474800_v2.0.a1 Prupe.1G475000_v2.0.a1 Prupe.1G475600_v2.0.a1 Prupe.1G476100_v2.0.a1 Prupe.1G476400_v2.0.a1 Prupe.1G476600_v2.0.a1 Prupe.1G476900_v2.0.a1 Prupe.1G477100_v2.0.a1 Prupe.1G477300_v2.0.a1 Prupe.1G477500_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477600_v2.0.a1 Prupe.1G477700_v2.0.a1 Prupe.1G477900_v2.0.a1 Prupe.1G478000_v2.0.a1 Prupe.2G074000_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G095900_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096100_v2.0.a1 Prupe.7G096200_v2.0.a1 Prupe.7G096400_v2.0.a1 Prupe.8G015000_v2.0.a1
pyrus_communis pycom08g12340 pycom11g04600 pycom15g09280 pycom15g10770 pycom15g10790 pycom15g11000 pycom15g11040 pycom854g00030 pycom854g00050
rosa_chinensis RchiOBHm_Chr1g0321791 RchiOBHm_Chr3g0452021 RchiOBHm_Chr3g0452031 RchiOBHm_Chr3g0475821 RchiOBHm_Chr4g0410021 RchiOBHm_Chr4g0412191 RchiOBHm_Chr4g0415271 RchiOBHm_Chr6g0244001 RchiOBHm_Chr6g0252301 RchiOBHm_Chr6g0252341 RchiOBHm_Chr6g0267401 RchiOBHm_Chr6g0297251 RchiOBHm_Chr6g0298131 RchiOBHm_Chr6g0298141 RchiOBHm_Chr6g0298151 RchiOBHm_Chr6g0298161 RchiOBHm_Chr6g0298261 RchiOBHm_Chr6g0298271 RchiOBHm_Chr6g0298281 RchiOBHm_Chr6g0298291 RchiOBHm_Chr6g0298311 RchiOBHm_Chr6g0298321 RchiOBHm_Chr6g0298331 RchiOBHm_Chr6g0298341 RchiOBHm_Chr6g0298381 RchiOBHm_Chr6g0302351 RchiOBHm_Chr7g0203021 RchiOBHm_Chr7g0225421
rosa_laevigata RLG00000023811 RLG00000030588
rosa_multiflora Rmu_co8159872.1_g000001 Rmu_co8452635.1_g000001 Rmu_co8477209.1_g000001 Rmu_sc0000365.1_g000079 Rmu_sc0000461.1_g000042 Rmu_sc0000539.1_g000085 Rmu_sc0001358.1_g000006 Rmu_sc0001358.1_g000007 Rmu_sc0001673.1_g000024 Rmu_sc0002691.1_g000007 Rmu_sc0002724.1_g000011 Rmu_sc0003410.1_g000027 Rmu_sc0003420.1_g000007 Rmu_sc0003420.1_g000008 Rmu_sc0003420.1_g000009 Rmu_sc0003420.1_g000010 Rmu_sc0003551.1_g000014 Rmu_sc0004535.1_g000001 Rmu_sc0006252.1_g000006 Rmu_sc0006543.1_g000004 Rmu_sc0006711.1_g000015 Rmu_sc0007115.1_g000004 Rmu_sc0007115.1_g000011 Rmu_sc0007115.1_g000014 Rmu_sc0009317.1_g000003 Rmu_sc0009318.1_g000002 Rmu_sc0009318.1_g000003 Rmu_sc0010099.1_g000008 Rmu_sc0012041.1_g000004 Rmu_sc0013249.1_g000008 Rmu_sc0035583.1_g000001 Rmu_ssc0000004.1_g000024
rosa_roxburghii Rroxscaffold_1G00023390 Rroxscaffold_1G00024930 Rroxscaffold_3G00234420 Rroxscaffold_3G00234430 Rroxscaffold_5G00354530 Rroxscaffold_6G00405820 Rroxscaffold_6G00429190 Rroxscaffold_7G00165840 Rroxscaffold_7G00169700 Rroxscaffold_7G00169730 Rroxscaffold_7G00169740 Rroxscaffold_7G00169770 Rroxscaffold_7G00169780 Rroxscaffold_7G00169790 Rroxscaffold_7G00169800 Rroxscaffold_7G00170710 Rroxscaffold_7G00170720 Rroxscaffold_7G00185780 Rroxscaffold_7G00185800 Rroxscaffold_7G00201380 Rroxscaffold_7G00216170
rosa_rugosa Rorug03G0151700 Rorug03G0151700 Rorug05G0292700 Rorug05G0292800
rosa_samantha Rh1AG047000 Rh2BG283800 Rh2BG283900 Rh3BG041400 Rh3BG231700 Rh3DG227000 Rh4CG170100 Rh4CG170200 Rh4CG204700 Rh6AG020700 Rh6AG021000 Rh6AG381400 Rh6AG381500 Rh6AG389300 Rh6AG390400 Rh6AG390500 Rh6AG390600 Rh6AG390700 Rh6AG391200 Rh6AG391400 Rh7CG233300
rosa_wichuraiana Rw0G004890 Rw2G021490 Rw3G003000 Rw3G018320 Rw3G018340 Rw4G012210 Rw4G013140 Rw4G016490 Rw6G001700 Rw6G001720 Rw6G001730 Rw6G033220 Rw6G033230 Rw6G033990 Rw6G034080 Rw6G034090 Rw6G034100 Rw6G034110 Rw6G034140 Rw6G034180 Rw6G034190 Rw6G034200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 237
AciI CCGC 2 cut(s) 185, 881
AclWI GGATC 3 cut(s) 300, 409, 891
AcsI RAATTY 1 cut(s) 609
AcuI CTGAAG 3 cut(s) 147, 315, 682
AfaI GTAC 2 cut(s) 239, 513
AgsI TTSAA 3 cut(s) 63, 419, 949
AjnI CCWGG 2 cut(s) 534, 956
AluBI AGCT 3 cut(s) 20, 271, 643
AluI AGCT 3 cut(s) 20, 271, 643
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 3 cut(s) 300, 409, 891
AoxI GGCC 2 cut(s) 153, 491
ApeKI GCWGC 4 cut(s) 198, 271, 980, 983
ApoI RAATTY 1 cut(s) 609
AseI ATTAAT 1 cut(s) 623
Asp718I GGTACC 1 cut(s) 237
AspLEI GCGC 1 cut(s) 1040
AspS9I GGNCC 2 cut(s) 182, 491
AsuHPI GGTGA 3 cut(s) 182, 742, 803
AsuII TTCGAA 2 cut(s) 498, 591
AvaII GGWCC 1 cut(s) 182
BanI GGYRCC 1 cut(s) 237
BbvI GCAGC 4 cut(s) 210, 258, 967, 970
BccI CCATC 1 cut(s) 74
BceAI ACGGC 2 cut(s) 152, 892
BciT130I CCWGG 2 cut(s) 536, 958
BclI TGATCA 1 cut(s) 990
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 2 cut(s) 115, 177
BglII AGATCT 1 cut(s) 928
BisI GCNGC 4 cut(s) 199, 272, 981, 984
BlsI GCNGC 4 cut(s) 200, 273, 982, 985
Bme1390I CCNGG 2 cut(s) 536, 958
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 182, 491
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 2 cut(s) 536, 958
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 315, 863
BmuI ACTGGG 1 cut(s) 315
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 1 cut(s) 561
Bpu14I TTCGAA 2 cut(s) 498, 591
BpuEI CTTGAG 2 cut(s) 150, 308
BsaJI CCNNGG 4 cut(s) 193, 826, 908, 956
Bse1I ACTGG 1 cut(s) 310
Bse3DI GCAATG 2 cut(s) 679, 680
BseBI CCWGG 2 cut(s) 536, 958
BseDI CCNNGG 4 cut(s) 193, 826, 908, 956
BseGI GGATG 2 cut(s) 85, 637
BseMI GCAATG 2 cut(s) 679, 680
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 2 cut(s) 482, 485
BseXI GCAGC 4 cut(s) 210, 258, 967, 970
BseYI CCCAGC 1 cut(s) 515
BshFI GGCC 2 cut(s) 155, 493
BshNI GGYRCC 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 178
BsnI GGCC 2 cut(s) 155, 493
Bsp119I TTCGAA 2 cut(s) 498, 591
Bsp143I GATC 6 cut(s) 292, 401, 560, 883, 928, 990
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 2 cut(s) 185, 881
BspANI GGCC 2 cut(s) 155, 493
BspLI GGNNCC 1 cut(s) 239
BspPI GGATC 3 cut(s) 300, 409, 891
BspT104I TTCGAA 2 cut(s) 498, 591
BspT107I GGYRCC 1 cut(s) 237
BsrDI GCAATG 2 cut(s) 679, 680
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 4 cut(s) 193, 826, 908, 956
BssMI GATC 6 cut(s) 292, 401, 560, 883, 928, 990
BssT1I CCWWGG 2 cut(s) 193, 826
Bst2UI CCWGG 2 cut(s) 536, 958
Bst4CI ACNGT 1 cut(s) 1018
Bst6I CTCTTC 2 cut(s) 227, 352
BstBI TTCGAA 2 cut(s) 498, 591
BstC8I GCNNGC 2 cut(s) 86, 318
BstDSI CCRYGG 2 cut(s) 193, 908
BstF5I GGATG 2 cut(s) 85, 637
BstHHI GCGC 1 cut(s) 1040
BstKTI GATC 6 cut(s) 295, 404, 563, 886, 931, 993
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 6 cut(s) 292, 401, 560, 883, 928, 990
BstMWI GCNNNNNNNGC 2 cut(s) 204, 1044
BstNI CCWGG 2 cut(s) 536, 958
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 2 cut(s) 534, 956
BstSFI CTRYAG 2 cut(s) 115, 177
BstV1I GCAGC 4 cut(s) 210, 258, 967, 970
BstX2I RGATCY 4 cut(s) 292, 401, 883, 928
BstYI RGATCY 4 cut(s) 292, 401, 883, 928
BsuRI GGCC 2 cut(s) 155, 493
BtgI CCRYGG 2 cut(s) 193, 908
BtsCI GGATG 2 cut(s) 85, 637
BtsIMutI CAGTG 2 cut(s) 303, 706
Cac8I GCNNGC 2 cut(s) 86, 318
CfoI GCGC 1 cut(s) 1040
Cfr13I GGNCC 2 cut(s) 182, 491
Csp6I GTAC 2 cut(s) 238, 512
CspCI CAANNNNNGTGG 2 cut(s) 729, 764
CviAII CATG 7 cut(s) 26, 194, 217, 250, 361, 520, 718
CviQI GTAC 2 cut(s) 238, 512
DpnI GATC 6 cut(s) 294, 403, 562, 885, 930, 992
DpnII GATC 6 cut(s) 292, 401, 560, 883, 928, 990
Eam1104I CTCTTC 2 cut(s) 227, 352
EarI CTCTTC 2 cut(s) 227, 352
Eco130I CCWWGG 2 cut(s) 193, 826
Eco147I AGGCCT 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 3 cut(s) 147, 315, 682
EcoRII CCWGG 2 cut(s) 534, 956
EcoT14I CCWWGG 2 cut(s) 193, 826
ErhI CCWWGG 2 cut(s) 193, 826
FaeI CATG 7 cut(s) 29, 197, 220, 253, 364, 523, 721
FatI CATG 7 cut(s) 25, 193, 216, 249, 360, 519, 717
FbaI TGATCA 1 cut(s) 990
Fnu4HI GCNGC 4 cut(s) 199, 272, 981, 984
FokI GGATG 2 cut(s) 92, 644
Fsp4HI GCNGC 4 cut(s) 199, 272, 981, 984
FspBI CTAG 1 cut(s) 411
GlaI GCGC 1 cut(s) 1039
GluI GCNGC 4 cut(s) 199, 272, 981, 984
GsaI CCCAGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 2 cut(s) 155, 493
HhaI GCGC 1 cut(s) 1040
Hin1II CATG 7 cut(s) 29, 197, 220, 253, 364, 523, 721
Hin6I GCGC 1 cut(s) 1038
HinP1I GCGC 1 cut(s) 1038
HinfI GANTC 3 cut(s) 52, 395, 543
HphI GGTGA 3 cut(s) 182, 742, 803
Hpy166II GTNNAC 1 cut(s) 733
Hpy188I TCNGA 4 cut(s) 51, 653, 816, 933
Hpy188III TCNNGA 4 cut(s) 125, 287, 399, 763
Hpy8I GTNNAC 1 cut(s) 733
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 3 cut(s) 339, 587, 916
HpyCH4III ACNGT 1 cut(s) 1018
HpyCH4V TGCA 2 cut(s) 360, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 1044
Hsp92II CATG 7 cut(s) 29, 197, 220, 253, 364, 523, 721
HspAI GCGC 1 cut(s) 1038
KpnI GGTACC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 990
Kzo9I GATC 6 cut(s) 292, 401, 560, 883, 928, 990
LmnI GCTCC 2 cut(s) 25, 640
Lsp1109I GCAGC 4 cut(s) 210, 258, 967, 970
LweI GCATC 2 cut(s) 315, 863
MaeI CTAG 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 791, 838
MalI GATC 6 cut(s) 294, 403, 562, 885, 930, 992
MboI GATC 6 cut(s) 292, 401, 560, 883, 928, 990
MboII GAAGA 6 cut(s) 51, 140, 233, 244, 339, 703
MflI RGATCY 4 cut(s) 292, 401, 883, 928
MluCI AATT 6 cut(s) 100, 609, 724, 752, 771, 975
MlyI GAGTC 1 cut(s) 552
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 9 cut(s) 174, 228, 283, 304, 353, 460, 463, 725, 796
MseI TTAA 5 cut(s) 209, 552, 623, 777, 819
MspA1I CMGCKG 2 cut(s) 271, 881
MspR9I CCNGG 2 cut(s) 536, 958
MvaI CCWGG 2 cut(s) 536, 958
MwoI GCNNNNNNNGC 2 cut(s) 204, 1044
NcoI CCATGG 1 cut(s) 193
NdeII GATC 6 cut(s) 292, 401, 560, 883, 928, 990
NlaIII CATG 7 cut(s) 29, 197, 220, 253, 364, 523, 721
NlaIV GGNNCC 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 791
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 2 cut(s) 498, 591
PceI AGGCCT 1 cut(s) 155
PfeI GAWTC 2 cut(s) 52, 395
PkrI GCNGC 4 cut(s) 200, 273, 982, 985
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
PshBI ATTAAT 1 cut(s) 623
Psp6I CCWGG 2 cut(s) 534, 956
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 2 cut(s) 534, 956
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 2 cut(s) 182, 491
PsuI RGATCY 4 cut(s) 292, 401, 883, 928
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 2 cut(s) 239, 513
RsaNI GTAC 2 cut(s) 238, 512
SaqAI TTAA 5 cut(s) 209, 552, 623, 777, 819
SatI GCNGC 4 cut(s) 199, 272, 981, 984
Sau3AI GATC 6 cut(s) 292, 401, 560, 883, 928, 990
Sau96I GGNCC 2 cut(s) 182, 491
SchI GAGTC 1 cut(s) 552
ScrFI CCNGG 2 cut(s) 536, 958
SfaNI GCATC 2 cut(s) 315, 863
SfcI CTRYAG 2 cut(s) 115, 177
SfuI TTCGAA 2 cut(s) 498, 591
SinI GGWCC 1 cut(s) 182
SmlI CTYRAG 2 cut(s) 165, 287
SmoI CTYRAG 2 cut(s) 165, 287
Sse9I AATT 6 cut(s) 100, 609, 724, 752, 771, 975
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 2 cut(s) 185, 881
SspMI CTAG 1 cut(s) 411
StuI AGGCCT 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 534, 956
StyI CCWWGG 2 cut(s) 193, 826
TaaI ACNGT 1 cut(s) 1018
TaqI TCGA 4 cut(s) 33, 261, 498, 591
TasI AATT 6 cut(s) 100, 609, 724, 752, 771, 975
TfiI GAWTC 2 cut(s) 52, 395
Tru1I TTAA 5 cut(s) 209, 552, 623, 777, 819
Tru9I TTAA 5 cut(s) 209, 552, 623, 777, 819
TscAI CASTG 2 cut(s) 310, 706
TseFI GTSAC 1 cut(s) 791
TseI GCWGC 4 cut(s) 198, 271, 980, 983
Tsp45I GTSAC 1 cut(s) 791
TspDTI ATGAA 2 cut(s) 162, 271
TspGWI ACGGA 2 cut(s) 479, 653
TspRI CASTG 2 cut(s) 310, 706
VpaK11BI GGWCC 1 cut(s) 182
VspI ATTAAT 1 cut(s) 623
XapI RAATTY 1 cut(s) 609
XceI RCATGY 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.