AT1G35150

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000215
Physical Location & Seq
Reverse (-)
12864158 .. 12866238
2081 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G35150.1

Sequence Viewer

Length: 1380 bp
ATGCTTGATAACAAGAAGAGAGAGCACATGCCTACATTGGCTCCTCCAAGCAGATGCTTGATAACAACAATAATGTGGACAGTTTGGATGACGAATGAAGTGGATGAGAATGAGTTTGATAACAAAGATCAAGATGAAGTTGTTCATGAAGAGAAGAAAAGTGGGCAGAAAGAAGAACTTCCTTCCAATATTTCCGATCCAGTAAATTGGGATGACATGAATATGAGATTCAGAGATTTATTAGTTGAAAAGGGTCTAGCGACAAGACATGACAAAAAAGGTGGTTACTTGGCAACTAGCGGGTACAATGATTGGAGAAATCTTTCAAAGCGACTCAAAGAACACAAAGGCAGCCATGATCACATTACTTGTATGACTCGTCGAGCTGAGTTAGAGTCTAGACTACAGAAAAATAAAACGATTGATAAGCATGCCCAAGAAGCAATAAACAAAGATAATATTCATTGGAGGGAAGTACTCCTAAGGATCATTGCATTGGTGAAAACTCACGCTAAAAATAATTTAGCATTTCGTGGAAAAAATGAAAAGGTTGGCCAAGACAGAAATGGGAATTTTTTGAGTTTTATTGAAATGATTGCAGAATTTGATGTCGTAATGAGAGAGCATATCAGAAGAATTGGTGCAGCTGAGATATATTCTCATTATTTAAGTCACAAGATTCAAAATGAGCTAATAGGTATCTTGACCGGTGAGATTAGACTTATGATCATGAAGACAATACATGCTTCAAAGTACTGTTCCATAATTCTTGATTGTACTCCGGATATTAGTCATAAAGAACAGATGACTATGATCATTCGATGTGTGAATATTTCTTCAACGTTAACGAAGGTTGAAGAGTTTTATTTGACATTTTTGGAAGTGAAAGATAAATCAAGTGAAGGGTTATTCTCTAAGATTAAAGAAGCATTAGTTGATATGGAGTTAGAGATTGATGATGTGAGAGGACAAGAGAGTGAAACACATGGTATTGGAGTGTTTGAGATTCTTTTTGGTATGATTCTTTGGTATGATCTTCTAGCTGTTGTCAACCGAGTGAGCAAGACTTTACAATCGGCTGACATTGATATTGATGTTGCTATTATCGAACTAAAAGGACTCGATATGGATATAGAAGCTGAATTTCTTGTAAAGAAGAAGAGGACCATTCGAAGAAAGAAGCATTTTGATGAAGTTTCAGAAAAAGGAGATGAGAATATGGACTTGTCACCAGAGGAGGATTTCAGAATTAATTACTTCTTCACACTCATAGATCAAGCTCTAAAATTGACATCTGCAAGTGATGAAAGTTTAATGGCATCTTGTGTGCACCTTGAATCATCCCTCAAGCATGGTGAGCATTCTGATATAGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

459

Amino Acids

53.07

Weight (kDa)

5.67

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 100 - 326 5.8e-11 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 781
AciI CCGC 1 cut(s) 300
AclI AACGTT 1 cut(s) 842
AclWI GGATC 2 cut(s) 191, 494
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 3 cut(s) 571, 602, 1142
AfaI GTAC 4 cut(s) 305, 477, 755, 778
AgeI ACCGGT 1 cut(s) 707
AgsI TTSAA 8 cut(s) 248, 327, 590, 683, 750, 840, 857, 1337
AluBI AGCT 6 cut(s) 386, 647, 691, 1043, 1139, 1280
AluI AGCT 6 cut(s) 386, 647, 691, 1043, 1139, 1280
Alw21I GWGCWC 2 cut(s) 27, 1332
Alw44I GTGCAC 1 cut(s) 1328
AlwI GGATC 2 cut(s) 191, 494
Aor13HI TCCGGA 1 cut(s) 781
AoxI GGCC 1 cut(s) 553
ApaLI GTGCAC 1 cut(s) 1328
ApeKI GCWGC 2 cut(s) 351, 644
ApoI RAATTY 3 cut(s) 571, 602, 1142
AseI ATTAAT 1 cut(s) 1251
AsiGI ACCGGT 1 cut(s) 707
Asp700I GAANNNNTTC 3 cut(s) 141, 177, 322
AspS9I GGNCC 1 cut(s) 1164
AsuHPI GGTGA 4 cut(s) 511, 722, 1221, 1367
AsuII TTCGAA 1 cut(s) 1171
AvaII GGWCC 1 cut(s) 1164
AxyI CCTNAGG 1 cut(s) 482
BaeGI GKGCMC 1 cut(s) 1332
BalI TGGCCA 1 cut(s) 555
BbsI GAAGAC 1 cut(s) 740
Bbv12I GWGCWC 2 cut(s) 27, 1332
BbvI GCAGC 2 cut(s) 363, 656
BccI CCATC 1 cut(s) 1367
BclI TGATCA 3 cut(s) 358, 726, 813
BfaI CTAG 5 cut(s) 257, 297, 399, 1040, 1378
BfmI CTRYAG 1 cut(s) 404
BisI GCNGC 2 cut(s) 352, 645
BlsI GCNGC 2 cut(s) 353, 646
BmcAI AGTACT 2 cut(s) 477, 755
Bme18I GGWCC 1 cut(s) 1164
BmgT120I GGNCC 1 cut(s) 1164
BmiI GGNNCC 1 cut(s) 42
BmsI GCATC 2 cut(s) 44, 1328
BpiI GAAGAC 1 cut(s) 740
Bpu14I TTCGAA 1 cut(s) 1171
BpuEI CTTGAG 1 cut(s) 1331
BsaWI WCCGGW 2 cut(s) 707, 781
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 1 cut(s) 200
Bse21I CCTNAGG 1 cut(s) 482
Bse3DI GCAATG 1 cut(s) 489
BseAI TCCGGA 1 cut(s) 781
BseGI GGATG 4 cut(s) 93, 109, 217, 1340
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 2 cut(s) 378, 639
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 2 cut(s) 33, 1250
BseSI GKGCMC 1 cut(s) 1332
BseXI GCAGC 2 cut(s) 363, 656
BsgI GTGCAG 1 cut(s) 663
BshFI GGCC 1 cut(s) 555
BshTI ACCGGT 1 cut(s) 707
BsiHKAI GWGCWC 2 cut(s) 27, 1332
BsiSI CCGG 2 cut(s) 708, 782
BsmI GAATGC 1 cut(s) 1360
BsnI GGCC 1 cut(s) 555
Bsp119I TTCGAA 1 cut(s) 1171
Bsp1286I GDGCHC 2 cut(s) 27, 1332
Bsp13I TCCGGA 1 cut(s) 781
Bsp143I GATC 8 cut(s) 127, 196, 358, 486, 726, 813, 1033, 1273
BspACI CCGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 2 cut(s) 379, 640
BspEI TCCGGA 1 cut(s) 781
BspHI TCATGA 2 cut(s) 145, 729
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 2 cut(s) 191, 494
BspT104I TTCGAA 1 cut(s) 1171
BsrDI GCAATG 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 707
BssMI GATC 8 cut(s) 127, 196, 358, 486, 726, 813, 1033, 1273
Bst4CI ACNGT 2 cut(s) 82, 758
Bst6I CTCTTC 4 cut(s) 11, 144, 852, 1154
BstBI TTCGAA 1 cut(s) 1171
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 4 cut(s) 387, 482, 648, 915
BstF5I GGATG 4 cut(s) 93, 109, 217, 1340
BstKTI GATC 8 cut(s) 130, 199, 361, 489, 729, 816, 1036, 1276
BstMBI GATC 8 cut(s) 127, 196, 358, 486, 726, 813, 1033, 1273
BstMWI GCNNNNNNNGC 2 cut(s) 440, 1357
BstNSI RCATGY 3 cut(s) 31, 434, 746
BstSFI CTRYAG 1 cut(s) 404
BstSLI GKGCMC 1 cut(s) 1332
BstV1I GCAGC 2 cut(s) 363, 656
BstV2I GAAGAC 1 cut(s) 740
BstXI CCANNNNNNTGG 1 cut(s) 207
Bsu36I CCTNAGG 1 cut(s) 482
BsuRI GGCC 1 cut(s) 555
BtsCI GGATG 4 cut(s) 93, 109, 217, 1340
Cac8I GCNNGC 1 cut(s) 432
CciI TCATGA 2 cut(s) 145, 729
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 1 cut(s) 1164
Csp6I GTAC 4 cut(s) 304, 476, 754, 777
CspAI ACCGGT 1 cut(s) 707
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviQI GTAC 4 cut(s) 304, 476, 754, 777
DdeI CTNAG 4 cut(s) 387, 482, 648, 915
DpnI GATC 8 cut(s) 129, 198, 360, 488, 728, 815, 1035, 1275
DpnII GATC 8 cut(s) 127, 196, 358, 486, 726, 813, 1033, 1273
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 4 cut(s) 11, 144, 852, 1154
EarI CTCTTC 4 cut(s) 11, 144, 852, 1154
Eco47I GGWCC 1 cut(s) 1164
Eco81I CCTNAGG 1 cut(s) 482
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FauI CCCGC 1 cut(s) 293
FbaI TGATCA 3 cut(s) 358, 726, 813
Fnu4HI GCNGC 2 cut(s) 352, 645
FokI GGATG 4 cut(s) 100, 116, 224, 1327
Fsp4HI GCNGC 2 cut(s) 352, 645
FspBI CTAG 5 cut(s) 257, 297, 399, 1040, 1378
GluI GCNGC 2 cut(s) 352, 645
HaeIII GGCC 1 cut(s) 555
HapII CCGG 2 cut(s) 708, 782
HincII GTYRAC 2 cut(s) 846, 1051
HindII GTYRAC 2 cut(s) 846, 1051
HinfI GANTC 9 cut(s) 228, 333, 376, 395, 679, 1006, 1021, 1119, 1337
HpaI GTTAAC 1 cut(s) 846
HpaII CCGG 2 cut(s) 708, 782
HphI GGTGA 4 cut(s) 511, 722, 1221, 1367
Hpy166II GTNNAC 4 cut(s) 78, 846, 1051, 1330
Hpy188I TCNGA 6 cut(s) 196, 233, 632, 1201, 1247, 1366
Hpy188III TCNNGA 7 cut(s) 131, 146, 399, 703, 730, 770, 782
Hpy8I GTNNAC 4 cut(s) 78, 846, 1051, 1330
Hpy99I CGWCG 1 cut(s) 384
HpyAV CCTTC 3 cut(s) 192, 844, 896
HpyCH4III ACNGT 2 cut(s) 82, 758
HpyCH4IV ACGT 1 cut(s) 842
HpyCH4V TGCA 5 cut(s) 494, 599, 644, 1298, 1330
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 1357
HpyF3I CTNAG 4 cut(s) 387, 482, 648, 915
HpySE526I ACGT 1 cut(s) 842
Kpn2I TCCGGA 1 cut(s) 781
Ksp22I TGATCA 3 cut(s) 358, 726, 813
KspAI GTTAAC 1 cut(s) 846
Kzo9I GATC 8 cut(s) 127, 196, 358, 486, 726, 813, 1033, 1273
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 4 cut(s) 213, 721, 795, 1245
Lsp1109I GCAGC 2 cut(s) 363, 656
LweI GCATC 2 cut(s) 44, 1328
MaeI CTAG 5 cut(s) 257, 297, 399, 1040, 1378
MaeII ACGT 1 cut(s) 842
MaeIII GTNAC 3 cut(s) 284, 671, 1227
MalI GATC 8 cut(s) 129, 198, 360, 488, 728, 815, 1035, 1275
MboI GATC 8 cut(s) 127, 196, 358, 486, 726, 813, 1033, 1273
MhlI GDGCHC 2 cut(s) 27, 1332
MlsI TGGCCA 1 cut(s) 555
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 4 cut(s) 327, 370, 404, 1113
MnlI CCTC 7 cut(s) 54, 462, 959, 1155, 1228, 1231, 1355
Mox20I TGGCCA 1 cut(s) 555
MroI TCCGGA 1 cut(s) 781
MroXI GAANNNNTTC 3 cut(s) 141, 177, 322
MscI TGGCCA 1 cut(s) 555
MseI TTAA 5 cut(s) 668, 845, 921, 1251, 1313
MslI CAYNNNNRTG 2 cut(s) 221, 1188
Msp20I TGGCCA 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 2 cut(s) 708, 782
Mva1269I GAATGC 1 cut(s) 1360
MwoI GCNNNNNNNGC 2 cut(s) 440, 1357
NdeII GATC 8 cut(s) 127, 196, 358, 486, 726, 813, 1033, 1273
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 2 cut(s) 671, 1227
NspI RCATGY 3 cut(s) 31, 434, 746
NspV TTCGAA 1 cut(s) 1171
PaeI GCATGC 1 cut(s) 434
PagI TCATGA 2 cut(s) 145, 729
PctI GAATGC 1 cut(s) 1360
PdmI GAANNNNTTC 3 cut(s) 141, 177, 322
PfeI GAWTC 5 cut(s) 228, 679, 1006, 1021, 1337
PinAI ACCGGT 1 cut(s) 707
PkrI GCNGC 2 cut(s) 353, 646
PleI GAGTC 4 cut(s) 327, 370, 403, 1113
PpsI GAGTC 4 cut(s) 327, 370, 403, 1113
PshBI ATTAAT 1 cut(s) 1251
Psp1406I AACGTT 1 cut(s) 842
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 1164
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 4 cut(s) 305, 477, 755, 778
RsaNI GTAC 4 cut(s) 304, 476, 754, 777
RseI CAYNNNNRTG 2 cut(s) 221, 1188
SaqAI TTAA 5 cut(s) 668, 845, 921, 1251, 1313
SatI GCNGC 2 cut(s) 352, 645
Sau3AI GATC 8 cut(s) 127, 196, 358, 486, 726, 813, 1033, 1273
Sau96I GGNCC 1 cut(s) 1164
ScaI AGTACT 2 cut(s) 477, 755
SchI GAGTC 4 cut(s) 327, 370, 404, 1113
SduI GDGCHC 2 cut(s) 27, 1332
SfaNI GCATC 2 cut(s) 44, 1328
SfcI CTRYAG 1 cut(s) 404
SfuI TTCGAA 1 cut(s) 1171
SinI GGWCC 1 cut(s) 1164
SmiMI CAYNNNNRTG 2 cut(s) 221, 1188
SmlI CTYRAG 1 cut(s) 1346
SmoI CTYRAG 1 cut(s) 1346
SphI GCATGC 1 cut(s) 434
SsiI CCGC 1 cut(s) 300
SspI AATATT 3 cut(s) 190, 460, 832
SspMI CTAG 5 cut(s) 257, 297, 399, 1040, 1378
TaaI ACNGT 2 cut(s) 82, 758
TaiI ACGT 1 cut(s) 845
TaqI TCGA 5 cut(s) 382, 820, 1107, 1122, 1171
TatI WGTACW 3 cut(s) 475, 753, 776
TfiI GAWTC 5 cut(s) 228, 679, 1006, 1021, 1337
Tru1I TTAA 5 cut(s) 668, 845, 921, 1251, 1313
Tru9I TTAA 5 cut(s) 668, 845, 921, 1251, 1313
TseFI GTSAC 2 cut(s) 671, 1227
TseI GCWGC 2 cut(s) 351, 644
Tsp45I GTSAC 2 cut(s) 671, 1227
VneI GTGCAC 1 cut(s) 1328
VpaK11BI GGWCC 1 cut(s) 1164
VspI ATTAAT 1 cut(s) 1251
XapI RAATTY 3 cut(s) 571, 602, 1142
XbaI TCTAGA 1 cut(s) 398
XceI RCATGY 3 cut(s) 31, 434, 746
XcmI CCANNNNNNNNNTGG 1 cut(s) 563
XmnI GAANNNNTTC 3 cut(s) 141, 177, 322
XspI CTAG 5 cut(s) 257, 297, 399, 1040, 1378
ZrmI AGTACT 2 cut(s) 477, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.