Rorug03G0111800

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000215
Physical Location & Seq
Reverse (-)
9032362 .. 9033213
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0111800.1

Sequence Viewer

Length: 507 bp
ATGGCGGCAAGCGACGAGTTCAGACTGGTCTTACCAGGAATAGACCACGAAGGAAAACTACTCAGAAAGTACACCGCAGAAGGTCAAGGAGCCAAGAAGAACATCTCTCCGCCAGTAGAATGGTACAACTTACCCCCAGGAACCAAGAGCCTGGCCCTTGTGGTGCAGGACATAGATGCACCAGATCCGAAAGACCCGCTTGTGCCGTGGACCAATTGGGTGGTGGTGAACATTCCACCGGGTGTGAAGTGCCTGCCGGAAGGTTTTTCCGGGAAAGAAGAGGATCAGATGGGCGGACAGTATGGCGGGCTCAAAGAAGGTAACAATGACTTAAAGGTTCCGGGGTGGTGTGGGCCAAAGTTGCCGTCGCCGGGTCACCGCTTCGAGTTCAAGCTCTATGCTTTGGATGATGAGCTTCATCTTGGTCACAAGGTGACGAAGGAGAAGGTGTTGGAGGCAATTGAAGGGCATGTGCTTGGAGAAGCAGTGATGATTGCGTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

168

Amino Acids

18.44

Weight (kDa)

5.36

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 22 - 168 2.7e-32 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 5, 75, 110, 197, 294, 306, 379
AclWI GGATC 2 cut(s) 179, 291
AdeI CACNNNGTG 2 cut(s) 242, 433
AfaI GTAC 2 cut(s) 71, 125
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 2 cut(s) 391, 464
AjnI CCWGG 3 cut(s) 34, 136, 150
AluBI AGCT 2 cut(s) 394, 415
AluI AGCT 2 cut(s) 394, 415
AlwI GGATC 2 cut(s) 179, 291
AoxI GGCC 2 cut(s) 153, 353
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AspS9I GGNCC 3 cut(s) 154, 210, 353
AsuC2I CCSGG 4 cut(s) 240, 271, 342, 372
AsuHPI GGTGA 3 cut(s) 238, 368, 445
AvaII GGWCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BccI CCATC 1 cut(s) 283
BceAI ACGGC 2 cut(s) 190, 349
BciT130I CCWGG 3 cut(s) 36, 138, 152
BcnI CCSGG 4 cut(s) 240, 271, 342, 372
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 7 cut(s) 36, 138, 152, 240, 271, 342, 372
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 3 cut(s) 154, 210, 353
BmiI GGNNCC 3 cut(s) 91, 142, 339
BmrFI CCNGG 7 cut(s) 36, 138, 152, 240, 271, 342, 372
BmsI GCATC 1 cut(s) 166
BpuMI CCSGG 4 cut(s) 240, 271, 342, 372
BsaJI CCNNGG 3 cut(s) 136, 206, 341
BsaXI ACNNNNNCTCC 4 cut(s) 434, 464, 471, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 2 cut(s) 30, 113
BseBI CCWGG 3 cut(s) 36, 138, 152
BseDI CCNNGG 3 cut(s) 136, 206, 341
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 2 cut(s) 30, 113
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 2 cut(s) 155, 355
BsiSI CCGG 5 cut(s) 239, 257, 270, 341, 371
BslI CCNNNNNNNGG 1 cut(s) 371
BsnI GGCC 2 cut(s) 155, 355
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 184, 283
BspACI CCGC 7 cut(s) 5, 75, 110, 197, 294, 306, 379
BspANI GGCC 2 cut(s) 155, 355
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 91, 142, 339
BspPI GGATC 2 cut(s) 179, 291
BsrI ACTGG 2 cut(s) 30, 113
BssECI CCNNGG 3 cut(s) 136, 206, 341
BssMI GATC 2 cut(s) 184, 283
Bst2UI CCWGG 3 cut(s) 36, 138, 152
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 3 cut(s) 10, 254, 308
BstDEI CTNAG 1 cut(s) 62
BstDSI CCRYGG 1 cut(s) 206
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 1 cut(s) 412
BstKTI GATC 2 cut(s) 187, 286
BstMBI GATC 2 cut(s) 184, 283
BstMWI GCNNNNNNNGC 1 cut(s) 361
BstNI CCWGG 3 cut(s) 36, 138, 152
BstNSI RCATGY 1 cut(s) 473
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 7 cut(s) 34, 136, 150, 238, 269, 340, 370
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 3 cut(s) 120, 151, 220
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 2 cut(s) 155, 355
BtgI CCRYGG 1 cut(s) 206
BtsCI GGATG 1 cut(s) 412
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 3 cut(s) 10, 254, 308
Cfr13I GGNCC 3 cut(s) 154, 210, 353
Csp6I GTAC 2 cut(s) 70, 124
CviAII CATG 1 cut(s) 470
CviJI RGCY 7 cut(s) 92, 150, 155, 310, 355, 394, 415
CviKI_1 RGCY 7 cut(s) 92, 150, 155, 310, 355, 394, 415
CviQI GTAC 2 cut(s) 70, 124
DdeI CTNAG 1 cut(s) 62
DpnI GATC 2 cut(s) 186, 285
DpnII GATC 2 cut(s) 184, 283
DraIII CACNNNGTG 2 cut(s) 242, 433
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 2 cut(s) 99, 309
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 210
Eco91I GGTNACC 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 374
EcoRII CCWGG 3 cut(s) 34, 136, 150
EcoT38I GRGCYC 1 cut(s) 312
FaeI CATG 1 cut(s) 473
FaiI YATR 4 cut(s) 173, 303, 399, 471
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 1 cut(s) 469
FauI CCCGC 2 cut(s) 204, 299
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 2 cut(s) 155, 355
HapII CCGG 5 cut(s) 239, 257, 270, 341, 371
Hin1II CATG 1 cut(s) 473
HpaII CCGG 5 cut(s) 239, 257, 270, 341, 371
HphI GGTGA 3 cut(s) 238, 368, 445
Hpy166II GTNNAC 3 cut(s) 72, 210, 229
Hpy188I TCNGA 4 cut(s) 23, 65, 189, 288
Hpy8I GTNNAC 3 cut(s) 72, 210, 229
Hpy99I CGWCG 2 cut(s) 17, 370
HpyAV CCTTC 7 cut(s) 44, 74, 254, 311, 433, 439, 458
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4V TGCA 2 cut(s) 166, 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 361
HpyF3I CTNAG 1 cut(s) 62
Hsp92II CATG 1 cut(s) 473
Kzo9I GATC 2 cut(s) 184, 283
LmnI GCTCC 1 cut(s) 89
LweI GCATC 1 cut(s) 166
MaeIII GTNAC 4 cut(s) 320, 374, 425, 433
MalI GATC 2 cut(s) 186, 285
MboI GATC 2 cut(s) 184, 283
MboII GAAGA 2 cut(s) 109, 290
MfeI CAATTG 2 cut(s) 214, 459
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 2 cut(s) 214, 459
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 2 cut(s) 274, 448
MseI TTAA 1 cut(s) 332
MspI CCGG 5 cut(s) 239, 257, 270, 341, 371
MspR9I CCNGG 7 cut(s) 36, 138, 152, 240, 271, 342, 372
MunI CAATTG 2 cut(s) 214, 459
MvaI CCWGG 3 cut(s) 36, 138, 152
MwoI GCNNNNNNNGC 1 cut(s) 361
NciI CCSGG 4 cut(s) 240, 271, 342, 372
NdeII GATC 2 cut(s) 184, 283
NlaIII CATG 1 cut(s) 473
NlaIV GGNNCC 3 cut(s) 91, 142, 339
NmuCI GTSAC 3 cut(s) 374, 425, 433
NspI RCATGY 1 cut(s) 473
PfoI TCCNGGA 1 cut(s) 269
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 3 cut(s) 34, 136, 150
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 3 cut(s) 34, 136, 150
PspN4I GGNNCC 3 cut(s) 91, 142, 339
PspPI GGNCC 3 cut(s) 154, 210, 353
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 2 cut(s) 71, 125
RsaNI GTAC 2 cut(s) 70, 124
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 184, 283
Sau96I GGNCC 3 cut(s) 154, 210, 353
ScrFI CCNGG 7 cut(s) 36, 138, 152, 240, 271, 342, 372
SduI GDGCHC 1 cut(s) 312
SetI ASST 8 cut(s) 85, 265, 322, 339, 396, 417, 435, 450
SfaNI GCATC 1 cut(s) 166
SinI GGWCC 1 cut(s) 210
Sse9I AATT 2 cut(s) 214, 459
SsiI CCGC 7 cut(s) 5, 75, 110, 197, 294, 306, 379
StyD4I CCNGG 7 cut(s) 34, 136, 150, 238, 269, 340, 370
TaaI ACNGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 384
TasI AATT 2 cut(s) 214, 459
TatI WGTACW 1 cut(s) 69
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 3 cut(s) 374, 425, 433
Tsp45I GTSAC 3 cut(s) 374, 425, 433
TspDTI ATGAA 1 cut(s) 407
TspRI CASTG 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 210
XceI RCATGY 1 cut(s) 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.