Rh3AG212700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000215
Physical Location & Seq
Forward (+)
21452142 .. 21455157
3016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG212700.1

Sequence Viewer

Length: 255 bp
ATGATTGACACTGAGAATGAAGATCAACTCATGGATGAGGAAGATAATGATAGTATGGATCAAGATGTCCAAAATGAAGATTTCAACGAGCAAATTAACTTTCCTTTGAATGTTGATGACCCAGGACCAGCTGCTGCTGTGGAGAAGATCAACACAGGCCTAAACAGAAAGCAAGTGGAGGGACAAGTTGCTAAGAACAACAGCACTCAGCTACTGAGTGCTGACAGTGCCATCCATGCTTTATCACAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.29

Weight (kDa)

4.05

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 66
AgsI TTSAA 2 cut(s) 85, 109
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 2 cut(s) 131, 211
AluI AGCT 2 cut(s) 131, 211
AlwI GGATC 1 cut(s) 66
AlwNI CAGNNNCTG 2 cut(s) 134, 214
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 131, 134
AspS9I GGNCC 1 cut(s) 125
AvaII GGWCC 1 cut(s) 125
BbvI GCAGC 2 cut(s) 118, 121
BccI CCATC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 123
BisI GCNGC 2 cut(s) 132, 135
BlsI GCNGC 2 cut(s) 133, 136
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 2 cut(s) 40, 231
BseMII CTCAG 2 cut(s) 206, 221
BseXI GCAGC 2 cut(s) 118, 121
BshFI GGCC 1 cut(s) 159
BslFI GGGAC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 22, 58, 147
BspANI GGCC 1 cut(s) 159
BspCNI CTCAG 3 cut(s) 4, 207, 220
BspPI GGATC 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 3 cut(s) 22, 58, 147
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 227
BstDEI CTNAG 4 cut(s) 12, 192, 207, 215
BstF5I GGATG 2 cut(s) 40, 231
BstKTI GATC 3 cut(s) 25, 61, 150
BstMBI GATC 3 cut(s) 22, 58, 147
BstMWI GCNNNNNNNGC 2 cut(s) 227, 236
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 118, 121
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 2 cut(s) 40, 231
BtsIMutI CAGTG 2 cut(s) 9, 232
CaiI CAGNNNCTG 2 cut(s) 134, 214
Cfr13I GGNCC 1 cut(s) 125
CviAII CATG 2 cut(s) 31, 236
CviJI RGCY 3 cut(s) 131, 159, 211
CviKI_1 RGCY 3 cut(s) 131, 159, 211
DdeI CTNAG 4 cut(s) 12, 192, 207, 215
DpnI GATC 3 cut(s) 24, 60, 149
DpnII GATC 3 cut(s) 22, 58, 147
Eco147I AGGCCT 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 121
FaeI CATG 2 cut(s) 34, 239
FaiI YATR 3 cut(s) 32, 56, 237
FaqI GGGAC 1 cut(s) 195
FatI CATG 2 cut(s) 30, 235
Fnu4HI GCNGC 2 cut(s) 132, 135
FokI GGATG 2 cut(s) 47, 218
Fsp4HI GCNGC 2 cut(s) 132, 135
GluI GCNGC 2 cut(s) 132, 135
HaeIII GGCC 1 cut(s) 159
Hin1II CATG 2 cut(s) 34, 239
Hpy188III TCNNGA 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 236
HpyF3I CTNAG 4 cut(s) 12, 192, 207, 215
Hsp92II CATG 2 cut(s) 34, 239
Kzo9I GATC 3 cut(s) 22, 58, 147
LpnPI CCDG 4 cut(s) 108, 135, 141, 141
Lsp1109I GCAGC 2 cut(s) 118, 121
MalI GATC 3 cut(s) 24, 60, 149
MboI GATC 3 cut(s) 22, 58, 147
MboII GAAGA 4 cut(s) 32, 53, 89, 157
MluCI AATT 1 cut(s) 93
MnlI CCTC 2 cut(s) 31, 172
MseI TTAA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 227, 236
NdeII GATC 3 cut(s) 22, 58, 147
NlaIII CATG 2 cut(s) 34, 239
PceI AGGCCT 1 cut(s) 159
PkrI GCNGC 2 cut(s) 133, 136
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspPI GGNCC 1 cut(s) 125
PstNI CAGNNNCTG 2 cut(s) 134, 214
PvuII CAGCTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 2 cut(s) 132, 135
Sau3AI GATC 3 cut(s) 22, 58, 147
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 123
SetI ASST 2 cut(s) 133, 213
SinI GGWCC 1 cut(s) 125
Sse9I AATT 1 cut(s) 93
SseBI AGGCCT 1 cut(s) 159
StuI AGGCCT 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 121
TaaI ACNGT 1 cut(s) 227
TasI AATT 1 cut(s) 93
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 2 cut(s) 16, 232
TseI GCWGC 2 cut(s) 131, 134
TspDTI ATGAA 2 cut(s) 33, 90
TspRI CASTG 2 cut(s) 16, 232
VpaK11BI GGWCC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.