Rw3G026090

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000215
Physical Location & Seq
Forward (+)
35402805 .. 35405297
2493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026090.1

Sequence Viewer

Length: 1299 bp
ATGAATGCTCATGAGAATCATGGTGAAGAAGAAAGAGAGCATATGATTGACACTGAGAATGAAGATCAACTCATGGATGAGGAAGATAATGATAGTATGGATCAAGATGTCCCAAATGCAGATTTCAATGAGCAAATTAACTTTCCTTTGAATGTTGATGACCCAGGTAATTGGGATAAGATTGACTACAATATCAGAGACTTTTTGGTTGAAAGAGGTCCTCAAAGAGACCATGATTATAATTTTTCCAAAGATACAAGTGAGATAAAACAATCAATTGTTACAAGTATCAAAGAAGCAAAATACTTTTCCATTATTATGGATTGCACTCCCGATGTAAGTCATGAAGAGCAAATGTCTCTTATAGTACGGTGTGTGGATGTTTCTTCAAAGCCTATAGTGGTAGAAGAGTTCTATCTAGAATTCTTGAAAGTAGATGATACATCAGGTCTTGGCCTTTTTACTGAGATTACAAATGCTTTGAGCACTCTTCAACTTGATATTGATGATATAAGAGGACAAGGATATGACAATGGAGCTAATATGAAAGGAAAACACAAAGTGATTCAAAGGATATATTCATTGTTTTCATCATCTACAAAGCGATGGCAAGTTTTCAAAGATTTTGTGGATGGTCTTACAGTTAAGCCGTTGTCACAGACACGTTGGGAGAGTCATGTTGAAAGTGTTAAACCCATAAGATTTCAAGCTCATAAAATAAGAGATGCTTTAATTCACTTGACAAAAGTTAGTGAAGATCCGAAGACAAAGAGTGAAGCCGAGTCGTTAGCAATATTTGAAATGGAGAACTTTGAATTCTTGCTTGGCATGGTTATTTGGTACAAGTTATTATTTGCTATCAATACTGTTAGCAAAATTCTTCAAACTGAAGACATGCATATTGATTTTGCCATCACAGAACTAAAGAAACTTATTTCTTCTCTTAAGAATTTTAGAGAAATTGGGTTTGATGAGGCCATGATTGACGCTAAGAAGATTGCAAATGAAATGGAGATTGAAGCTGTATTTCGTGAAAAGCGAGTCATTCGGAGAAAGAGACAATTTGATGAGAGTGCAAGTGAAGAAGTGACACAATCAGCTGAAGAATCATTCCGAGTTAATTACTTCACATATATATTTCAAAAATATGAAGAACTTTTTTGGTTCTTATTCAATGTAGAGAAGTTGAACCTCCCACTGGGTTCCAGCCATCAAAAAAAAAAATTATGTTTAACTAGTTTTGTAATTCAGAATTTTATGCAAGGAATAAATATTCATATACTTTTGTATTGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

432

Amino Acids

50.56

Weight (kDa)

4.89

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 75 - 186 1.4e-12 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
AclWI GGATC 2 cut(s) 108, 752
AcsI RAATTY 5 cut(s) 422, 815, 876, 949, 1252
AcuI CTGAAG 2 cut(s) 909, 1122
AdeI CACNNNGTG 1 cut(s) 562
AfaI GTAC 2 cut(s) 369, 842
AfiI CCNNNNNNNGG 1 cut(s) 1198
AflII CTTAAG 1 cut(s) 944
AflIII ACRYGT 1 cut(s) 662
AhlI ACTAGT 1 cut(s) 1235
AjnI CCWGG 1 cut(s) 163
AjuI GAANNNNNNNTTGG 2 cut(s) 807, 839
AluBI AGCT 4 cut(s) 539, 710, 1022, 1100
AluI AGCT 4 cut(s) 539, 710, 1022, 1100
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 4 cut(s) 192, 222, 363, 1051
AlwI GGATC 2 cut(s) 108, 752
AoxI GGCC 2 cut(s) 454, 975
ApoI RAATTY 5 cut(s) 422, 815, 876, 949, 1252
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 218
BbsI GAAGAC 2 cut(s) 770, 897
Bbv12I GWGCWC 1 cut(s) 488
BccI CCATC 4 cut(s) 600, 626, 920, 1218
BceAI ACGGC 1 cut(s) 634
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 4 cut(s) 192, 222, 363, 1051
BcuI ACTAGT 1 cut(s) 1235
BfaI CTAG 2 cut(s) 419, 1236
BfmI CTRYAG 1 cut(s) 396
BfrI CTTAAG 1 cut(s) 944
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 1204
BmrFI CCNGG 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 1208
BmsI GCATC 1 cut(s) 715
BmuI ACTGGG 1 cut(s) 1208
BpiI GAAGAC 2 cut(s) 770, 897
BsaI GGTCTC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 1198
Bse1I ACTGG 1 cut(s) 1203
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 163
BseGI GGATG 3 cut(s) 82, 385, 637
BseLI CCNNNNNNNGG 1 cut(s) 1198
BseMII CTCAG 2 cut(s) 45, 456
BseNI ACTGG 1 cut(s) 1203
BshFI GGCC 2 cut(s) 456, 977
BsiHKAI GWGCWC 1 cut(s) 488
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 1198
BsmAI GTCTC 4 cut(s) 192, 222, 363, 1051
BsmFI GGGAC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 456, 977
Bso31I GGTCTC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 488
Bsp143I GATC 3 cut(s) 64, 100, 757
BspANI GGCC 2 cut(s) 456, 977
BspCNI CTCAG 2 cut(s) 46, 457
BspHI TCATGA 2 cut(s) 10, 343
BspLI GGNNCC 1 cut(s) 1204
BspPI GGATC 2 cut(s) 108, 752
BspQI GCTCTTC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 944
BspTNI GGTCTC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 1203
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 3 cut(s) 64, 100, 757
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 3 cut(s) 372, 643, 868
Bst6I CTCTTC 3 cut(s) 342, 402, 495
BstAFI CTTAAG 1 cut(s) 944
BstDEI CTNAG 3 cut(s) 54, 465, 990
BstF5I GGATG 3 cut(s) 82, 385, 637
BstKTI GATC 3 cut(s) 67, 103, 760
BstMAI GTCTC 4 cut(s) 192, 222, 363, 1051
BstMBI GATC 3 cut(s) 64, 100, 757
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 898
BstSCI CCNGG 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 396
BstV2I GAAGAC 2 cut(s) 770, 897
BstX2I RGATCY 1 cut(s) 757
BstXI CCANNNNNNTGG 2 cut(s) 171, 319
BstYI RGATCY 1 cut(s) 757
BsuRI GGCC 2 cut(s) 456, 977
BtgZI GCGATG 1 cut(s) 619
BtsCI GGATG 3 cut(s) 82, 385, 637
BtsIMutI CAGTG 2 cut(s) 51, 1196
CciI TCATGA 2 cut(s) 10, 343
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 995
Csp6I GTAC 2 cut(s) 368, 841
CviAII CATG 9 cut(s) 11, 20, 73, 233, 344, 677, 829, 895, 979
CviQI GTAC 2 cut(s) 368, 841
DdeI CTNAG 3 cut(s) 54, 465, 990
DpnI GATC 3 cut(s) 66, 102, 759
DpnII GATC 3 cut(s) 64, 100, 757
DraIII CACNNNGTG 1 cut(s) 562
Eam1104I CTCTTC 3 cut(s) 342, 402, 495
EarI CTCTTC 3 cut(s) 342, 402, 495
Eco31I GGTCTC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 2 cut(s) 909, 1122
EcoO109I RGGNCCY 1 cut(s) 218
EcoRI GAATTC 2 cut(s) 422, 815
EcoRII CCWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 900
FaeI CATG 9 cut(s) 14, 23, 76, 236, 347, 680, 832, 898, 982
FalI AAGNNNNNCTT 2 cut(s) 712, 744
FaqI GGGAC 1 cut(s) 95
FatI CATG 9 cut(s) 10, 19, 72, 232, 343, 676, 828, 894, 978
FauNDI CATATG 1 cut(s) 42
FokI GGATG 3 cut(s) 89, 392, 644
FspBI CTAG 2 cut(s) 419, 1236
HaeIII GGCC 2 cut(s) 456, 977
HgaI GACGC 1 cut(s) 995
Hin1II CATG 9 cut(s) 14, 23, 76, 236, 347, 680, 832, 898, 982
HinfI GANTC 6 cut(s) 16, 565, 673, 782, 1041, 1106
HphI GGTGA 1 cut(s) 35
Hpy188I TCNGA 5 cut(s) 197, 762, 1050, 1115, 1251
Hpy188III TCNNGA 7 cut(s) 11, 104, 332, 344, 419, 427, 1031
HpyCH4III ACNGT 3 cut(s) 372, 643, 868
HpyCH4IV ACGT 1 cut(s) 664
HpyCH4V TGCA 6 cut(s) 119, 327, 898, 1001, 1076, 1261
HpyF3I CTNAG 3 cut(s) 54, 465, 990
HpySE526I ACGT 1 cut(s) 664
Hsp92II CATG 9 cut(s) 14, 23, 76, 236, 347, 680, 832, 898, 982
Kzo9I GATC 3 cut(s) 64, 100, 757
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 536
LpnPI CCDG 5 cut(s) 150, 177, 432, 1184, 1219
LweI GCATC 1 cut(s) 715
MaeI CTAG 2 cut(s) 419, 1236
MaeII ACGT 1 cut(s) 664
MaeIII GTNAC 3 cut(s) 280, 654, 1087
MalI GATC 3 cut(s) 66, 102, 759
MboI GATC 3 cut(s) 64, 100, 757
MfeI CAATTG 1 cut(s) 276
MflI RGATCY 1 cut(s) 757
MhlI GDGCHC 1 cut(s) 488
MlyI GAGTC 3 cut(s) 682, 791, 1050
MnlI CCTC 6 cut(s) 73, 209, 231, 509, 967, 1202
Mph1103I ATGCAT 1 cut(s) 900
MseI TTAA 7 cut(s) 138, 645, 690, 731, 945, 1119, 1232
MslI CAYNNNNRTG 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 1100
MspCI CTTAAG 1 cut(s) 944
MspR9I CCNGG 1 cut(s) 165
MunI CAATTG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 165
NdeI CATATG 1 cut(s) 42
NdeII GATC 3 cut(s) 64, 100, 757
NlaIII CATG 9 cut(s) 14, 23, 76, 236, 347, 680, 832, 898, 982
NlaIV GGNNCC 1 cut(s) 1204
NmeAIII GCCGAG 1 cut(s) 805
NmuCI GTSAC 2 cut(s) 654, 1087
NsiI ATGCAT 1 cut(s) 900
NspI RCATGY 1 cut(s) 898
PagI TCATGA 2 cut(s) 10, 343
PciSI GCTCTTC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 1036
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 16, 565, 1106
PleI GAGTC 3 cut(s) 681, 790, 1049
PpsI GAGTC 3 cut(s) 681, 790, 1049
PpuMI RGGWCCY 1 cut(s) 218
PsiI TTATAA 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 1204
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PsuI RGATCY 1 cut(s) 757
PvuII CAGCTG 1 cut(s) 1100
RsaI GTAC 2 cut(s) 369, 842
RsaNI GTAC 2 cut(s) 368, 841
RseI CAYNNNNRTG 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 7 cut(s) 138, 645, 690, 731, 945, 1119, 1232
Sau3AI GATC 3 cut(s) 64, 100, 757
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 3 cut(s) 682, 791, 1050
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 1 cut(s) 488
SetI ASST 9 cut(s) 169, 220, 451, 541, 667, 712, 1024, 1102, 1194
SfaNI GCATC 1 cut(s) 715
SfcI CTRYAG 1 cut(s) 396
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 944
SmoI CTYRAG 1 cut(s) 944
SpeI ACTAGT 1 cut(s) 1235
SspI AATATT 2 cut(s) 795, 1273
SspMI CTAG 2 cut(s) 419, 1236
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 372, 643, 868
TaiI ACGT 1 cut(s) 667
TfiI GAWTC 3 cut(s) 16, 565, 1106
Tru1I TTAA 7 cut(s) 138, 645, 690, 731, 945, 1119, 1232
Tru9I TTAA 7 cut(s) 138, 645, 690, 731, 945, 1119, 1232
TscAI CASTG 2 cut(s) 58, 1203
TseFI GTSAC 2 cut(s) 654, 1087
Tsp45I GTSAC 2 cut(s) 654, 1087
TspDTI ATGAA 9 cut(s) 17, 75, 360, 560, 570, 579, 1020, 1164, 1265
TspRI CASTG 2 cut(s) 58, 1203
Vha464I CTTAAG 1 cut(s) 944
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 5 cut(s) 422, 815, 876, 949, 1252
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 1 cut(s) 898
XspI CTAG 2 cut(s) 419, 1236
Zsp2I ATGCAT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.