Rw4G007090

Domain of unknown function (DUF4371)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
14834598 .. 14835182
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G007090.1

Sequence Viewer

Length: 585 bp
ATGCAAAACGCTTTGGTTAATTCTTTAAGGGGAAGTCTTGATAGGTTCATTAGTAGAAAATTAGAAGGTTTGGGTGGGCATTTAGTTAATGAAGTGGCAGAAGAGCACACTGATAGGGAAGATAATGTGGAAGAGCACACTGATGGCAATGTAGTTGTCGATAATTTGGGTCATGATGAAAATGAGAATGGTACAGGACATAATGATAATGTGAATGATGCTCCTGTGAATATTTTTGACCCAAGAAATTGGGATAGTTTGGATAAAAAGTTGATAGATTTGTTGGTAGAAAAGGGTCCTCATAGAGATCTTTCAATAGAAAATGGTCCTCCAGACAAGTTCAATAGACGTTTCAGTTCAAAATTCTACACTCTGTTTTTAAGAAATGGAGAGAAATATGATAGAGAGTGGCTAGTGTACTCAAAGGAACTTGATAAGGTTTTTTGTTTTTGTTGCAAGTTGTTTAAGAGGGGGCCAATGCGAGGTCAGTTACCGATTGAGAACGAATATCTTGGAAAAATCAATTGTGATAAGCTAATTGATCAGTTTGCAGGTAAGAAGGCAAGGAGATGGATTTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

194

Amino Acids

22.51

Weight (kDa)

5.9

Isoelectric Point (pI)

28.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 542
AcsI RAATTY 1 cut(s) 362
AfaI GTAC 2 cut(s) 193, 419
AfiI CCNNNNNNNGG 1 cut(s) 482
AgsI TTSAA 4 cut(s) 315, 343, 360, 580
AluBI AGCT 1 cut(s) 535
AluI AGCT 1 cut(s) 535
Alw21I GWGCWC 2 cut(s) 108, 138
AoxI GGCC 1 cut(s) 473
ApoI RAATTY 1 cut(s) 362
AspS9I GGNCC 3 cut(s) 296, 326, 473
AvaII GGWCC 2 cut(s) 296, 326
Bbv12I GWGCWC 2 cut(s) 108, 138
BccI CCATC 2 cut(s) 137, 564
BclI TGATCA 1 cut(s) 541
BfaI CTAG 1 cut(s) 413
BfuAI ACCTGC 1 cut(s) 542
BglII AGATCT 1 cut(s) 307
Bme18I GGWCC 2 cut(s) 296, 326
BmgT120I GGNCC 3 cut(s) 296, 326, 473
BmiI GGNNCC 2 cut(s) 297, 474
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse3DI GCAATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMI GCAATG 1 cut(s) 154
BshFI GGCC 1 cut(s) 475
BsiHKAI GWGCWC 2 cut(s) 108, 138
BslI CCNNNNNNNGG 1 cut(s) 482
BsnI GGCC 1 cut(s) 475
Bsp1286I GDGCHC 2 cut(s) 108, 138
Bsp143I GATC 2 cut(s) 307, 541
BspANI GGCC 1 cut(s) 475
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 297, 474
BspMI ACCTGC 1 cut(s) 542
BspQI GCTCTTC 2 cut(s) 96, 126
BsrDI GCAATG 1 cut(s) 154
BssMI GATC 2 cut(s) 307, 541
Bst6I CTCTTC 2 cut(s) 96, 126
BstKTI GATC 2 cut(s) 310, 544
BstMBI GATC 2 cut(s) 307, 541
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 249
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 1 cut(s) 475
BtsIMutI CAGTG 2 cut(s) 108, 138
BveI ACCTGC 1 cut(s) 542
CciI TCATGA 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 296, 326, 473
Csp6I GTAC 2 cut(s) 192, 418
CviAII CATG 1 cut(s) 173
CviJI RGCY 3 cut(s) 412, 475, 535
CviKI_1 RGCY 3 cut(s) 412, 475, 535
CviQI GTAC 2 cut(s) 192, 418
DpnI GATC 2 cut(s) 309, 543
DpnII GATC 2 cut(s) 307, 541
Eam1104I CTCTTC 2 cut(s) 96, 126
EarI CTCTTC 2 cut(s) 96, 126
Eco47I GGWCC 2 cut(s) 296, 326
EcoO109I RGGNCCY 1 cut(s) 296
FaeI CATG 1 cut(s) 176
FaiI YATR 4 cut(s) 174, 201, 303, 399
FatI CATG 1 cut(s) 172
FbaI TGATCA 1 cut(s) 541
FspBI CTAG 1 cut(s) 413
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 475
Hin1II CATG 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 418
Hpy188III TCNNGA 3 cut(s) 38, 173, 332
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 2 cut(s) 59, 553
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 3 cut(s) 4, 456, 551
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 2 cut(s) 307, 541
LguI GCTCTTC 2 cut(s) 96, 126
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 4 cut(s) 180, 237, 345, 537
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 413
MaeII ACGT 1 cut(s) 349
MaeIII GTNAC 1 cut(s) 489
MalI GATC 2 cut(s) 309, 543
MboI GATC 2 cut(s) 307, 541
MboII GAAGA 3 cut(s) 113, 131, 143
MfeI CAATTG 1 cut(s) 523
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 2 cut(s) 108, 138
MluCI AATT 7 cut(s) 19, 59, 163, 247, 362, 523, 537
MnlI CCTC 4 cut(s) 309, 339, 462, 476
MseI TTAA 5 cut(s) 18, 26, 87, 380, 465
MslI CAYNNNNRTG 1 cut(s) 141
MunI CAATTG 1 cut(s) 523
NdeII GATC 2 cut(s) 307, 541
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 2 cut(s) 297, 474
PagI TCATGA 1 cut(s) 172
PciSI GCTCTTC 2 cut(s) 96, 126
PpuMI RGGWCCY 1 cut(s) 296
Psp5II RGGWCCY 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 297, 474
PspPI GGNCC 3 cut(s) 296, 326, 473
PspPPI RGGWCCY 1 cut(s) 296
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 2 cut(s) 193, 419
RsaNI GTAC 2 cut(s) 192, 418
RseI CAYNNNNRTG 1 cut(s) 141
SapI GCTCTTC 2 cut(s) 96, 126
SaqAI TTAA 5 cut(s) 18, 26, 87, 380, 465
Sau3AI GATC 2 cut(s) 307, 541
Sau96I GGNCC 3 cut(s) 296, 326, 473
SduI GDGCHC 2 cut(s) 108, 138
SetI ASST 7 cut(s) 47, 70, 352, 441, 487, 537, 556
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 2 cut(s) 296, 326
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 7 cut(s) 19, 59, 163, 247, 362, 523, 537
SspI AATATT 1 cut(s) 232
SspMI CTAG 1 cut(s) 413
TaiI ACGT 1 cut(s) 352
TaqI TCGA 1 cut(s) 159
TasI AATT 7 cut(s) 19, 59, 163, 247, 362, 523, 537
TatI WGTACW 1 cut(s) 417
Tru1I TTAA 5 cut(s) 18, 26, 87, 380, 465
Tru9I TTAA 5 cut(s) 18, 26, 87, 380, 465
TscAI CASTG 2 cut(s) 115, 145
TspDTI ATGAA 3 cut(s) 37, 105, 192
TspRI CASTG 2 cut(s) 115, 145
VpaK11BI GGWCC 2 cut(s) 296, 326
XapI RAATTY 1 cut(s) 362
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.