Rw5G027260

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000215
Physical Location & Seq
Reverse (-)
40036158 .. 40036859
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G027260.1

Sequence Viewer

Length: 702 bp
ATGATTGAAGCTAAAGAAATTGCAAATGACATGGGAGTTGAGCCTGTATTTCCTATAAAACGTCATGTTTGCAGAAAAAGACATTTTGATGAAATTCCAAATACTGAAAGAGAACAACAATCTGCTCAAGAGTCCTTTAGAACTGATTACTTTTTTATTTTAGTTGATATGGCTCTTTCTCAATTAAAAAGCAGGTTTGAACAAATGAAAACTTTTGAATCTATTTTTGGCTTCTTATTTGATGTATCAAAGTTAGCTCACTTGGATGATGATGAATTGAAAAGTTATTGTTTGAATCTTGAAAATGCTTTGAGAAAGGGTGATGGTTCTGATATTGATGCGAAATATTTGCTTATGGAGTTACAAATTTTGCAGGAGATGCTGCCGAATGAGGCATATGAAACAGATAGGCCTTGGACATCCATTCAAATTATGGAGTTTGCTAAAAAAATGGATATGTTTCCAAGTGTTATGGTTGCCTACAGGATTTTATTGACTATACCGGTGACGGTAGCATCCGCTGAAAGAAGTTTTTCAAAATTGAAGTTATTAAAGTCTTATCTTCGGACTACCATGACTCAAGATAGGCTGAATGGACTAGCTATGTTAACCATTGAAAGAAATATGTTGGCAAATGTTGACTACAAAAAGATGATTGATGATTTTGCTTCAAGAAATGCAAGAAGACATCATTTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

233

Amino Acids

27.37

Weight (kDa)

6.24

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 143 - 209 8.4e-13 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 183
AciI CCGC 1 cut(s) 519
AcsI RAATTY 2 cut(s) 93, 366
AgeI ACCGGT 1 cut(s) 502
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AluBI AGCT 3 cut(s) 11, 257, 602
AluI AGCT 3 cut(s) 11, 257, 602
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 1 cut(s) 382
ApoI RAATTY 2 cut(s) 93, 366
AsiGI ACCGGT 1 cut(s) 502
Asp700I GAANNNNTTC 1 cut(s) 532
AsuHPI GGTGA 2 cut(s) 332, 517
BbsI GAAGAC 1 cut(s) 691
BbvI GCAGC 1 cut(s) 369
BccI CCATC 1 cut(s) 317
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BfaI CTAG 1 cut(s) 599
BfmI CTRYAG 1 cut(s) 481
BfuAI ACCTGC 1 cut(s) 183
BisI GCNGC 1 cut(s) 383
BlsI GCNGC 1 cut(s) 384
BmsI GCATC 3 cut(s) 328, 369, 524
BpiI GAAGAC 1 cut(s) 691
BpuEI CTTGAG 2 cut(s) 111, 564
BsaJI CCNNGG 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 502
Bse118I RCCGGY 1 cut(s) 502
BseDI CCNNGG 1 cut(s) 413
BseGI GGATG 3 cut(s) 271, 419, 515
BseXI GCAGC 1 cut(s) 369
BshFI GGCC 1 cut(s) 412
BshTI ACCGGT 1 cut(s) 502
BsiSI CCGG 1 cut(s) 503
BsnI GGCC 1 cut(s) 412
BspACI CCGC 1 cut(s) 519
BspANI GGCC 1 cut(s) 412
BspMI ACCTGC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 502
BssAI RCCGGY 1 cut(s) 502
BssECI CCNNGG 1 cut(s) 413
BssT1I CCWWGG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 511
BstAPI GCANNNNNTGC 1 cut(s) 379
BstF5I GGATG 3 cut(s) 271, 419, 515
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 481
BstV1I GCAGC 1 cut(s) 369
BstV2I GAAGAC 1 cut(s) 691
BsuRI GGCC 1 cut(s) 412
BtsCI GGATG 3 cut(s) 271, 419, 515
BveI ACCTGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 502
CspAI ACCGGT 1 cut(s) 502
CviAII CATG 3 cut(s) 31, 65, 574
CviJI RGCY 8 cut(s) 11, 43, 173, 231, 257, 412, 589, 602
CviKI_1 RGCY 8 cut(s) 11, 43, 173, 231, 257, 412, 589, 602
Eco130I CCWWGG 1 cut(s) 413
Eco147I AGGCCT 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 413
ErhI CCWWGG 1 cut(s) 413
FaeI CATG 3 cut(s) 34, 68, 577
FatI CATG 3 cut(s) 30, 64, 573
FauNDI CATATG 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 383
FokI GGATG 3 cut(s) 278, 406, 502
Fsp4HI GCNGC 1 cut(s) 383
FspBI CTAG 1 cut(s) 599
GluI GCNGC 1 cut(s) 383
HaeIII GGCC 1 cut(s) 412
HapII CCGG 1 cut(s) 503
Hin1II CATG 3 cut(s) 34, 68, 577
HincII GTYRAC 2 cut(s) 609, 640
HindII GTYRAC 2 cut(s) 609, 640
HinfI GANTC 4 cut(s) 131, 218, 295, 577
HpaI GTTAAC 1 cut(s) 609
HpaII CCGG 1 cut(s) 503
HphI GGTGA 2 cut(s) 332, 517
Hpy166II GTNNAC 2 cut(s) 609, 640
Hpy188I TCNGA 2 cut(s) 331, 567
Hpy188III TCNNGA 4 cut(s) 128, 299, 581, 672
Hpy8I GTNNAC 2 cut(s) 609, 640
HpyCH4III ACNGT 1 cut(s) 511
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 4 cut(s) 23, 72, 373, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 3 cut(s) 34, 68, 577
KspAI GTTAAC 1 cut(s) 609
LpnPI CCDG 5 cut(s) 57, 178, 359, 469, 516
Lsp1109I GCAGC 1 cut(s) 369
LweI GCATC 3 cut(s) 328, 369, 524
MaeI CTAG 1 cut(s) 599
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 2 cut(s) 360, 505
MboII GAAGA 2 cut(s) 554, 696
MluCI AATT 7 cut(s) 18, 93, 182, 275, 366, 429, 539
MlyI GAGTC 2 cut(s) 140, 571
MnlI CCTC 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 532
MseI TTAA 3 cut(s) 185, 551, 608
MslI CAYNNNNRTG 2 cut(s) 87, 264
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 1 cut(s) 503
MwoI GCNNNNNNNGC 1 cut(s) 379
NdeI CATATG 1 cut(s) 397
NlaIII CATG 3 cut(s) 34, 68, 577
NmuCI GTSAC 1 cut(s) 505
PceI AGGCCT 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 532
PfeI GAWTC 2 cut(s) 218, 295
PinAI ACCGGT 1 cut(s) 502
PkrI GCNGC 1 cut(s) 384
PleI GAGTC 2 cut(s) 139, 571
PpsI GAGTC 2 cut(s) 139, 571
RseI CAYNNNNRTG 2 cut(s) 87, 264
SaqAI TTAA 3 cut(s) 185, 551, 608
SatI GCNGC 1 cut(s) 383
SchI GAGTC 2 cut(s) 140, 571
SetI ASST 5 cut(s) 13, 64, 197, 259, 604
SfaNI GCATC 3 cut(s) 328, 369, 524
SfcI CTRYAG 1 cut(s) 481
SmiMI CAYNNNNRTG 2 cut(s) 87, 264
SmlI CTYRAG 2 cut(s) 126, 579
SmoI CTYRAG 2 cut(s) 126, 579
Sse9I AATT 7 cut(s) 18, 93, 182, 275, 366, 429, 539
SseBI AGGCCT 1 cut(s) 412
SsiI CCGC 1 cut(s) 519
SspI AATATT 1 cut(s) 347
SspMI CTAG 1 cut(s) 599
StuI AGGCCT 1 cut(s) 412
StyI CCWWGG 1 cut(s) 413
TaaI ACNGT 1 cut(s) 511
TaiI ACGT 1 cut(s) 64
TasI AATT 7 cut(s) 18, 93, 182, 275, 366, 429, 539
TfiI GAWTC 2 cut(s) 218, 295
Tru1I TTAA 3 cut(s) 185, 551, 608
Tru9I TTAA 3 cut(s) 185, 551, 608
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 4 cut(s) 105, 221, 288, 414
XapI RAATTY 2 cut(s) 93, 366
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 532
XspI CTAG 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.