DNA-binding transcription factor activity, RNA polymerase II-specific
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 308 |
| AclWI | GGATC | 1 cut(s) | 191 |
| AcsI | RAATTY | 1 cut(s) | 170 |
| AfaI | GTAC | 1 cut(s) | 91 |
| AgsI | TTSAA | 3 cut(s) | 140, 162, 248 |
| AjnI | CCWGG | 1 cut(s) | 199 |
| Alw26I | GTCTC | 1 cut(s) | 294 |
| AlwI | GGATC | 1 cut(s) | 191 |
| ApoI | RAATTY | 1 cut(s) | 170 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 167, 199 |
| AspS9I | GGNCC | 1 cut(s) | 253 |
| AsuHPI | GGTGA | 2 cut(s) | 68, 355 |
| AvaII | GGWCC | 1 cut(s) | 253 |
| BciT130I | CCWGG | 1 cut(s) | 201 |
| BclI | TGATCA | 1 cut(s) | 145 |
| BcoDI | GTCTC | 1 cut(s) | 294 |
| Bme1390I | CCNGG | 1 cut(s) | 201 |
| Bme18I | GGWCC | 1 cut(s) | 253 |
| BmgT120I | GGNCC | 1 cut(s) | 253 |
| BmrFI | CCNGG | 1 cut(s) | 201 |
| BsaWI | WCCGGW | 1 cut(s) | 282 |
| Bse1I | ACTGG | 1 cut(s) | 110 |
| BseBI | CCWGG | 1 cut(s) | 201 |
| BseNI | ACTGG | 1 cut(s) | 110 |
| BsgI | GTGCAG | 2 cut(s) | 39, 186 |
| BsiSI | CCGG | 1 cut(s) | 283 |
| BslFI | GGGAC | 1 cut(s) | 296 |
| BsmAI | GTCTC | 1 cut(s) | 294 |
| BsmFI | GGGAC | 1 cut(s) | 296 |
| Bsp143I | GATC | 3 cut(s) | 145, 196, 270 |
| BspPI | GGATC | 1 cut(s) | 191 |
| BsrI | ACTGG | 1 cut(s) | 110 |
| BssMI | GATC | 3 cut(s) | 145, 196, 270 |
| Bst2UI | CCWGG | 1 cut(s) | 201 |
| Bst6I | CTCTTC | 1 cut(s) | 243 |
| BstKTI | GATC | 3 cut(s) | 148, 199, 273 |
| BstMAI | GTCTC | 1 cut(s) | 294 |
| BstMBI | GATC | 3 cut(s) | 145, 196, 270 |
| BstNI | CCWGG | 1 cut(s) | 201 |
| BstSCI | CCNGG | 1 cut(s) | 199 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 207 |
| BtsIMutI | CAGTG | 1 cut(s) | 117 |
| Cfr13I | GGNCC | 1 cut(s) | 253 |
| Csp6I | GTAC | 1 cut(s) | 90 |
| CviJI | RGCY | 1 cut(s) | 70 |
| CviKI_1 | RGCY | 1 cut(s) | 70 |
| CviQI | GTAC | 1 cut(s) | 90 |
| DpnI | GATC | 3 cut(s) | 147, 198, 272 |
| DpnII | GATC | 3 cut(s) | 145, 196, 270 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 308 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 308 |
| Eam1104I | CTCTTC | 1 cut(s) | 243 |
| EarI | CTCTTC | 1 cut(s) | 243 |
| Eco47I | GGWCC | 1 cut(s) | 253 |
| EcoO109I | RGGNCCY | 1 cut(s) | 253 |
| EcoRII | CCWGG | 1 cut(s) | 199 |
| FaiI | YATR | 1 cut(s) | 74 |
| FaqI | GGGAC | 1 cut(s) | 296 |
| FbaI | TGATCA | 1 cut(s) | 145 |
| HapII | CCGG | 1 cut(s) | 283 |
| HinfI | GANTC | 2 cut(s) | 23, 158 |
| HpaII | CCGG | 1 cut(s) | 283 |
| HphI | GGTGA | 2 cut(s) | 68, 355 |
| HpyCH4IV | ACGT | 1 cut(s) | 189 |
| HpyCH4V | TGCA | 2 cut(s) | 20, 167 |
| HpySE526I | ACGT | 1 cut(s) | 189 |
| Ksp22I | TGATCA | 1 cut(s) | 145 |
| Kzo9I | GATC | 3 cut(s) | 145, 196, 270 |
| LpnPI | CCDG | 5 cut(s) | 123, 186, 213, 296, 342 |
| MaeII | ACGT | 1 cut(s) | 189 |
| MalI | GATC | 3 cut(s) | 147, 198, 272 |
| MboI | GATC | 3 cut(s) | 145, 196, 270 |
| MboII | GAAGA | 5 cut(s) | 98, 134, 152, 260, 363 |
| MluCI | AATT | 2 cut(s) | 170, 205 |
| MnlI | CCTC | 3 cut(s) | 112, 244, 353 |
| MseI | TTAA | 2 cut(s) | 39, 219 |
| MspI | CCGG | 1 cut(s) | 283 |
| MspR9I | CCNGG | 1 cut(s) | 201 |
| MvaI | CCWGG | 1 cut(s) | 201 |
| NdeII | GATC | 3 cut(s) | 145, 196, 270 |
| PfeI | GAWTC | 2 cut(s) | 23, 158 |
| PfoI | TCCNGGA | 1 cut(s) | 199 |
| PpuMI | RGGWCCY | 1 cut(s) | 253 |
| Psp5II | RGGWCCY | 1 cut(s) | 253 |
| Psp6I | CCWGG | 1 cut(s) | 199 |
| PspGI | CCWGG | 1 cut(s) | 199 |
| PspPI | GGNCC | 1 cut(s) | 253 |
| PspPPI | RGGWCCY | 1 cut(s) | 253 |
| RsaI | GTAC | 1 cut(s) | 91 |
| RsaNI | GTAC | 1 cut(s) | 90 |
| SaqAI | TTAA | 2 cut(s) | 39, 219 |
| Sau3AI | GATC | 3 cut(s) | 145, 196, 270 |
| Sau96I | GGNCC | 1 cut(s) | 253 |
| ScrFI | CCNGG | 1 cut(s) | 201 |
| SetI | ASST | 5 cut(s) | 37, 192, 255, 280, 364 |
| SgeI | CNNG | 9 cut(s) | 39, 44, 122, 174, 212, 213, 295, 306, 340 |
| SinI | GGWCC | 1 cut(s) | 253 |
| Sse9I | AATT | 2 cut(s) | 170, 205 |
| SspI | AATATT | 1 cut(s) | 236 |
| StyD4I | CCNGG | 1 cut(s) | 199 |
| TaiI | ACGT | 1 cut(s) | 192 |
| TasI | AATT | 2 cut(s) | 170, 205 |
| TfiI | GAWTC | 2 cut(s) | 23, 158 |
| Tru1I | TTAA | 2 cut(s) | 39, 219 |
| Tru9I | TTAA | 2 cut(s) | 39, 219 |
| TscAI | CASTG | 1 cut(s) | 117 |
| TspDTI | ATGAA | 3 cut(s) | 17, 21, 63 |
| TspGWI | ACGGA | 1 cut(s) | 107 |
| TspRI | CASTG | 1 cut(s) | 117 |
| VpaK11BI | GGWCC | 1 cut(s) | 253 |
| XapI | RAATTY | 1 cut(s) | 170 |