Rmu_sc0002880.1_g000005

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002880.1
OG0000215
Physical Location & Seq
Forward (+)
14246 .. 16355
2110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002880.1_g000005.1.cds

Sequence Viewer

Length: 1821 bp
atgaacatttatgatcctagaaattgggataatctcaataccgagttgagagatttattagttgaaaagggtcctgtaagagatttgttagtggagaaaagtcctcagcataaatcctctgtgggtttctcttcagaattttacactcgaattttaccaaatggagagaaacaggatagagaatggctggtttattcaaaggaggttgataaagcatattgcttttgttgtaagttgtttaaagaatgtcaccgaaacaatcagcttgtgaatgaaggaaatttggaacgaattagtgctttgcttaaagaaagtccccagagctctgagttagcgaatgaaggatgtagagattggggaaatcttagtttttttattagagaacatgaaagaagtatggcacacatctttaacatgacaacctggggtggtttgcgtcgtagatctcagaaagatgaaagaatcgacaaagttgtttttaagctagagaaagagcattggcggagtgtattgccgagaataatttcggttgtgaaatttcttgctaagcacaacatgacatttttcagaacaattgcgagcatggatcaggatgattgtggaaatctttcaagcttcattgaaatgattgcggagtgggatcctgtaatgcaagagcatatcagaagtattaaaagaaatgagattcgtcatcattatcttggttgtaacatccaggaattgacgactattctagcttctgaaatcaaaagttcaatcgtcaggaaaatcaaagaagccaagtatttttctgtgattgtggactgtgctcttgatgcgagtgagcttttaaacttcagcaatatgtctgaacatggaccttttgaacaaatgcagaatctgttaaaagctcttgatcttgatattgatgatgtaagaggacagggatatggcattggatctctggtgaaagggagagccaaagctcttgaaccattgtcaaccaaacgctgggagagtcaactggaatgtgttaaagcaataagattccatgcttcagatataagagaagctttacttcaagtagcagatactgagtttgacctcggactagtccaccaagctaattctttagcaacatatgatcttgaatatgagttcttattaggcatgatcatttggtttgatatattatctgctgttgacctggttagcaagtacttgcaatctaaagacatgcgtattgatattgctataactgaagtaaagaggctgatcaagttttttgaaaagtacagggaggttgggtttacagaggcattgaatgtttctaaagaaattgccaccgaaatggaaattgattctgtgtttgatgaagaacgtcaaattcgtaagagaaaacgtttaggcaagaatgccgatcagtcatctcctgaatcacttgaagaaggcttaagagtgcagtatttcttatatactgtggatcaagttgctggtttattgaagagaactcttgaacagtatcaagcatatgaggatatctttgggtttctgttttgttctgagaagttgaactcattggaggaaaaacatttgaaaacttcttgtggtcatcttgaaatgtttcttaatcatgggaagtttcgtgatgttgatgggaacagcttatttaaagaactgaaatgcttaaggaagcagttgccagaagaaaatatgacagctatcgatatattaaatttcataaaaggactggactttcttccaaatgcattcattgcctatagaattttgctgactatacctgtcctattcacttccactgatggttatctttcaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

606

Amino Acids

70.37

Weight (kDa)

5.87

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 990
AciI CCGC 2 cut(s) 502, 632
AclI AACGTT 1 cut(s) 1381
AclWI GGATC 6 cut(s) 8, 594, 635, 648, 946, 1470
AcsI RAATTY 7 cut(s) 137, 150, 280, 536, 1365, 1714, 1764
AcuI CTGAAG 4 cut(s) 117, 820, 1020, 1260
AfaI GTAC 2 cut(s) 1199, 1274
AfiI CCNNNNNNNGG 1 cut(s) 990
AflII CTTAAG 2 cut(s) 1432, 1666
AhlI ACTAGT 1 cut(s) 1090
AjnI CCWGG 3 cut(s) 422, 714, 1185
Alw21I GWGCWC 2 cut(s) 326, 811
AlwI GGATC 6 cut(s) 8, 594, 635, 648, 946, 1470
AlwNI CAGNNNCTG 2 cut(s) 880, 1073
ApoI RAATTY 7 cut(s) 137, 150, 280, 536, 1365, 1714, 1764
Asp700I GAANNNNTTC 3 cut(s) 523, 607, 1602
AspS9I GGNCC 2 cut(s) 71, 857
AsuHPI GGTGA 2 cut(s) 242, 958
AvaII GGWCC 2 cut(s) 71, 857
BamHI GGATCC 1 cut(s) 640
BanII GRGCYC 1 cut(s) 326
Bbv12I GWGCWC 2 cut(s) 326, 811
BbvCI CCTCAGC 1 cut(s) 105
BccI CCATC 2 cut(s) 1628, 1796
BciT130I CCWGG 3 cut(s) 424, 716, 1187
BclI TGATCA 2 cut(s) 1152, 1254
BcuI ACTAGT 1 cut(s) 1090
BfaI CTAG 4 cut(s) 18, 485, 734, 1091
BfmI CTRYAG 1 cut(s) 1759
BfrI CTTAAG 2 cut(s) 1432, 1666
BglII AGATCT 1 cut(s) 443
BlpI GCTNAGC 1 cut(s) 546
BmcAI AGTACT 1 cut(s) 1199
Bme1390I CCNGG 3 cut(s) 424, 716, 1187
Bme18I GGWCC 2 cut(s) 71, 857
BmgT120I GGNCC 2 cut(s) 71, 857
BmiI GGNNCC 2 cut(s) 72, 642
BmrFI CCNGG 3 cut(s) 424, 716, 1187
BmsI GCATC 1 cut(s) 805
Bpu10I CCTNAGC 1 cut(s) 105
Bpu1102I GCTNAGC 1 cut(s) 546
Bsa29I ATCGAT 1 cut(s) 1704
BsaBI GATNNNNATC 1 cut(s) 1806
BsaJI CCNNGG 2 cut(s) 423, 1084
BsaXI ACNNNNNCTCC 2 cut(s) 1271, 1301
Bsc4I CCNNNNNNNGG 1 cut(s) 990
Bse1I ACTGG 2 cut(s) 1008, 1734
Bse3DI GCAATG 1 cut(s) 1752
Bse8I GATNNNNATC 1 cut(s) 1806
BseBI CCWGG 3 cut(s) 424, 716, 1187
BseCI ATCGAT 1 cut(s) 1704
BseDI CCNNGG 2 cut(s) 423, 1084
BseGI GGATG 3 cut(s) 350, 598, 711
BseJI GATNNNNATC 1 cut(s) 1806
BseLI CCNNNNNNNGG 1 cut(s) 990
BseMI GCAATG 1 cut(s) 1752
BseMII CTCAG 5 cut(s) 119, 318, 461, 1065, 1533
BseNI ACTGG 2 cut(s) 1008, 1734
BseYI CCCAGC 1 cut(s) 990
BsgI GTGCAG 1 cut(s) 1460
BshVI ATCGAT 1 cut(s) 1704
BsiHKAI GWGCWC 2 cut(s) 326, 811
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 990
BsmFI GGGAC 1 cut(s) 300
BsmI GAATGC 2 cut(s) 1399, 1748
Bsp1286I GDGCHC 2 cut(s) 326, 811
Bsp1720I GCTNAGC 1 cut(s) 546
BspACI CCGC 2 cut(s) 502, 632
BspCNI CTCAG 5 cut(s) 118, 319, 460, 1066, 1534
BspDI ATCGAT 1 cut(s) 1704
BspLI GGNNCC 2 cut(s) 72, 642
BspPI GGATC 6 cut(s) 8, 594, 635, 648, 946, 1470
BspTI CTTAAG 2 cut(s) 1432, 1666
BsrDI GCAATG 1 cut(s) 1752
BsrI ACTGG 2 cut(s) 1008, 1734
BssECI CCNNGG 2 cut(s) 423, 1084
Bst2UI CCWGG 3 cut(s) 424, 716, 1187
Bst4CI ACNGT 3 cut(s) 806, 1459, 1500
Bst6I CTCTTC 2 cut(s) 136, 1478
BstAFI CTTAAG 2 cut(s) 1432, 1666
BstAPI GCANNNNNTGC 1 cut(s) 1754
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 7 cut(s) 105, 327, 365, 447, 546, 1074, 1542
BstF5I GGATG 3 cut(s) 350, 598, 711
BstMWI GCNNNNNNNGC 2 cut(s) 815, 1754
BstNI CCWGG 3 cut(s) 424, 716, 1187
BstNSI RCATGY 1 cut(s) 1219
BstSCI CCNGG 3 cut(s) 422, 714, 1185
BstSFI CTRYAG 1 cut(s) 1759
BstX2I RGATCY 3 cut(s) 443, 640, 938
BstXI CCANNNNNNTGG 1 cut(s) 1330
BstYI RGATCY 3 cut(s) 443, 640, 938
Bsu15I ATCGAT 1 cut(s) 1704
BsuTUI ATCGAT 1 cut(s) 1704
BtsCI GGATG 3 cut(s) 350, 598, 711
BtsIMutI CAGTG 1 cut(s) 1797
Cac8I GCNNGC 1 cut(s) 580
CaiI CAGNNNCTG 2 cut(s) 880, 1073
Cfr13I GGNCC 2 cut(s) 71, 857
ClaI ATCGAT 1 cut(s) 1704
CseI GACGC 1 cut(s) 425
CsiI ACCWGGT 1 cut(s) 1185
Csp6I GTAC 2 cut(s) 1198, 1273
CviAII CATG 9 cut(s) 386, 415, 556, 583, 854, 1031, 1150, 1216, 1613
CviQI GTAC 2 cut(s) 1198, 1273
DdeI CTNAG 7 cut(s) 105, 327, 365, 447, 546, 1074, 1542
DraI TTTAAA 3 cut(s) 241, 831, 1651
Eam1104I CTCTTC 2 cut(s) 136, 1478
EarI CTCTTC 2 cut(s) 136, 1478
EciI GGCGGA 1 cut(s) 517
Ecl136II GAGCTC 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 326
Eco32I GATATC 1 cut(s) 1519
Eco47I GGWCC 2 cut(s) 71, 857
Eco53kI GAGCTC 1 cut(s) 324
Eco57I CTGAAG 4 cut(s) 117, 820, 1020, 1260
EcoICRI GAGCTC 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 71
EcoRII CCWGG 3 cut(s) 422, 714, 1185
EcoRV GATATC 1 cut(s) 1519
EcoT22I ATGCAT 1 cut(s) 1750
EcoT38I GRGCYC 1 cut(s) 326
FaeI CATG 9 cut(s) 389, 418, 559, 586, 857, 1034, 1153, 1219, 1616
FalI AAGNNNNNCTT 4 cut(s) 1036, 1068, 1041, 1073
FaqI GGGAC 1 cut(s) 300
FatI CATG 9 cut(s) 385, 414, 555, 582, 853, 1030, 1149, 1215, 1612
FauNDI CATATG 2 cut(s) 1120, 1510
FbaI TGATCA 2 cut(s) 1152, 1254
FokI GGATG 3 cut(s) 357, 605, 698
FriOI GRGCYC 1 cut(s) 326
FspBI CTAG 4 cut(s) 18, 485, 734, 1091
GsaI CCCAGC 1 cut(s) 994
HgaI GACGC 1 cut(s) 425
Hin1II CATG 9 cut(s) 389, 418, 559, 586, 857, 1034, 1153, 1219, 1616
HincII GTYRAC 3 cut(s) 981, 1001, 1183
HindII GTYRAC 3 cut(s) 981, 1001, 1183
HindIII AAGCTT 2 cut(s) 613, 1050
HinfI GANTC 7 cut(s) 462, 685, 877, 997, 1026, 1340, 1415
HphI GGTGA 2 cut(s) 242, 958
Hpy166II GTNNAC 6 cut(s) 802, 981, 1001, 1096, 1183, 1290
Hpy8I GTNNAC 6 cut(s) 802, 981, 1001, 1096, 1183, 1290
Hpy99I CGWCG 1 cut(s) 441
HpyAV CCTTC 3 cut(s) 269, 335, 1421
HpyCH4III ACNGT 3 cut(s) 806, 1459, 1500
HpyCH4IV ACGT 2 cut(s) 1360, 1381
HpyCH4V TGCA 5 cut(s) 652, 874, 1204, 1441, 1748
HpyF10VI GCNNNNNNNGC 2 cut(s) 815, 1754
HpyF3I CTNAG 7 cut(s) 105, 327, 365, 447, 546, 1074, 1542
HpySE526I ACGT 2 cut(s) 1360, 1381
Hsp92II CATG 9 cut(s) 389, 418, 559, 586, 857, 1034, 1153, 1219, 1616
Ksp22I TGATCA 2 cut(s) 1152, 1254
LweI GCATC 1 cut(s) 805
MabI ACCWGGT 1 cut(s) 1185
MaeI CTAG 4 cut(s) 18, 485, 734, 1091
MaeII ACGT 2 cut(s) 1360, 1381
MaeIII GTNAC 2 cut(s) 248, 707
MboII GAAGA 6 cut(s) 123, 1367, 1436, 1495, 1697, 1730
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 3 cut(s) 443, 640, 938
MhlI GDGCHC 2 cut(s) 326, 811
MlyI GAGTC 1 cut(s) 1006
Mph1103I ATGCAT 1 cut(s) 1750
MroXI GAANNNNTTC 3 cut(s) 523, 607, 1602
MslI CAYNNNNRTG 2 cut(s) 623, 1328
MspCI CTTAAG 2 cut(s) 1432, 1666
MspR9I CCNGG 3 cut(s) 424, 716, 1187
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 2 cut(s) 1399, 1748
MvaI CCWGG 3 cut(s) 424, 716, 1187
MwoI GCNNNNNNNGC 2 cut(s) 815, 1754
NdeI CATATG 2 cut(s) 1120, 1510
NlaIII CATG 9 cut(s) 389, 418, 559, 586, 857, 1034, 1153, 1219, 1616
NlaIV GGNNCC 2 cut(s) 72, 642
NmeAIII GCCGAG 1 cut(s) 540
NmuCI GTSAC 1 cut(s) 248
NsiI ATGCAT 1 cut(s) 1750
NspI RCATGY 1 cut(s) 1219
PcsI WCGNNNNNNNCGW 1 cut(s) 1366
PctI GAATGC 2 cut(s) 1399, 1748
PdmI GAANNNNTTC 3 cut(s) 523, 607, 1602
PfeI GAWTC 6 cut(s) 462, 685, 877, 1026, 1340, 1415
PflMI CCANNNNNTGG 1 cut(s) 990
PfoI TCCNGGA 1 cut(s) 714
PleI GAGTC 1 cut(s) 1005
PpsI GAGTC 1 cut(s) 1005
PpuMI RGGWCCY 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 326
Psp1406I AACGTT 1 cut(s) 1381
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 3 cut(s) 422, 714, 1185
PspFI CCCAGC 1 cut(s) 990
PspGI CCWGG 3 cut(s) 422, 714, 1185
PspN4I GGNNCC 2 cut(s) 72, 642
PspPI GGNCC 2 cut(s) 71, 857
PspPPI RGGWCCY 1 cut(s) 71
PstNI CAGNNNCTG 2 cut(s) 880, 1073
PsuI RGATCY 3 cut(s) 443, 640, 938
RsaI GTAC 2 cut(s) 1199, 1274
RsaNI GTAC 2 cut(s) 1198, 1273
RseI CAYNNNNRTG 2 cut(s) 623, 1328
SacI GAGCTC 1 cut(s) 326
Sau96I GGNCC 2 cut(s) 71, 857
ScaI AGTACT 1 cut(s) 1199
SchI GAGTC 1 cut(s) 1006
ScrFI CCNGG 3 cut(s) 424, 716, 1187
SduI GDGCHC 2 cut(s) 326, 811
SexAI ACCWGGT 1 cut(s) 1185
SfaNI GCATC 1 cut(s) 805
SfcI CTRYAG 1 cut(s) 1759
SinI GGWCC 2 cut(s) 71, 857
SmiMI CAYNNNNRTG 2 cut(s) 623, 1328
SmlI CTYRAG 2 cut(s) 1432, 1666
SmoI CTYRAG 2 cut(s) 1432, 1666
SpeI ACTAGT 1 cut(s) 1090
SsiI CCGC 2 cut(s) 502, 632
SspMI CTAG 4 cut(s) 18, 485, 734, 1091
SstI GAGCTC 1 cut(s) 326
StyD4I CCNGG 3 cut(s) 422, 714, 1185
TaaI ACNGT 3 cut(s) 806, 1459, 1500
TaiI ACGT 2 cut(s) 1363, 1384
TaqI TCGA 3 cut(s) 148, 465, 1704
TatI WGTACW 2 cut(s) 1197, 1272
TfiI GAWTC 6 cut(s) 462, 685, 877, 1026, 1340, 1415
TscAI CASTG 1 cut(s) 1804
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 9 cut(s) 17, 288, 354, 402, 471, 607, 1368, 1708, 1741
TspRI CASTG 1 cut(s) 1804
Van91I CCANNNNNTGG 1 cut(s) 990
Vha464I CTTAAG 2 cut(s) 1432, 1666
VpaK11BI GGWCC 2 cut(s) 71, 857
XapI RAATTY 7 cut(s) 137, 150, 280, 536, 1365, 1714, 1764
XceI RCATGY 1 cut(s) 1219
XmnI GAANNNNTTC 3 cut(s) 523, 607, 1602
XspI CTAG 4 cut(s) 18, 485, 734, 1091
ZrmI AGTACT 1 cut(s) 1199
Zsp2I ATGCAT 1 cut(s) 1750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.