AT2G16040

hAT family C-terminal dimerisation region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000215
Physical Location & Seq
Forward (+)
6976017 .. 6977683
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16040.1

Sequence Viewer

Length: 1149 bp
ATGATTGGAGGTTTTAATTCGGATATGAAGGAACACATTCGGCGGGCTAATAAAGGTGAAATTCATTGCCATTTTCCCAGTCATAAGAGTCAGAATGAATTGACAGAATTACTTGCTAATGATACCAAGATGATGATCTTAAAGAAGATTAAAGATGCGAAGTATTTTTCAGTCATTCTTGATTCCATTCCGGATGTTAGTCGTAAAGAACAAATGACCTTCTTAATTCGATGTGTGGATGTTTCAACGTGTTCACCTAAGATTGAGGAGTTCTTCTTGACGTTTCTACACATCAAAGATAAGAGGGAATACACTGATAATCCAGGACACCGGAGTGATGTTGAGTCTCTTACAGAGAGTGAAACACATGGAATTGGAGGGTTTGAATTTTTATTTGGAATGATAATTTGGTACGATTTGCTAGCTGCTGTGAATATAGTAAGCAAATCCTTACAGTTTGAGGATATGGATCTTGAGGTTGCTATTTCTCAGTTAGGAGGGCTTGTTACTTATTTGAAAAACTACAAAGAAACAGGTTTCGAGAAAGCCAAAGTTGAATCTACACAAATTGCCATTGAGATGAAGATTGCGCCGGTATTTCCAAAAAAGTCGGTGAAAAAAAAAAAGCAATTTGTTGAGGATGTTGAGAAGATTGATGAAAGTAAGATTGCAGAGGAGAGTTTTAGAATTGATTACTTCATCAATATAATGGATCAAGCTATAATGTGTATTGAGATAAGATTCGAGCAATTCCAAGTATATGAACAAATATTTGGATTTTTGTTTGGTGTAAAGAGATTGAAGGTAGCAGAAGATGATGAGTTAAGGACATCGTGTATGAAGCTTGAAGCTTCTTTGAAGCATGATGTGCATTCAGATGTTGATGGAGAAGATCTGTTTATGGAGCTGAAACTTTTAAAAGATGTGTTGCCAAAAGAGATTACAAAGCCGGTCGAAGTGTTGAAATTTTTGAAAATAATGGATAGCTGTTATCCAAACACATGGATCGCTTATCGTATACTACTCACCATTCCGGTTTCAGTTGCTTTGGCGGAGAGAACTTTTTCAAAATTAAAGCTCATAAAAAAATATCTACGTTCGACTATGTCTCAAGAGCGATTGAATGGTTTGGCGCTGATATCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dimer_Tnp_hAT

Protein Analysis

382

Amino Acids

44.12

Weight (kDa)

6.07

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 298 - 381 1.2e-17 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1018
AccIII TCCGGA 1 cut(s) 190
AciI CCGC 2 cut(s) 43, 1052
AclWI GGATC 3 cut(s) 477, 720, 1013
AcsI RAATTY 3 cut(s) 60, 386, 965
AfaI GTAC 1 cut(s) 413
AflIII ACRYGT 1 cut(s) 248
AjnI CCWGG 1 cut(s) 322
AjuI GAANNNNNNNTTGG 6 cut(s) 378, 391, 410, 423, 756, 788
AleI CACNNNNGTG 1 cut(s) 333
AluBI AGCT 7 cut(s) 425, 719, 844, 851, 907, 987, 1078
AluI AGCT 7 cut(s) 425, 719, 844, 851, 907, 987, 1078
Alw26I GTCTC 2 cut(s) 351, 1113
AlwI GGATC 3 cut(s) 477, 720, 1013
Aor13HI TCCGGA 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 3 cut(s) 60, 386, 965
Asp700I GAANNNNTTC 2 cut(s) 36, 1063
AspLEI GCGC 2 cut(s) 592, 1135
AsuHPI GGTGA 4 cut(s) 68, 246, 625, 1018
AsuNHI GCTAGC 1 cut(s) 421
BbvI GCAGC 1 cut(s) 412
BccI CCATC 1 cut(s) 878
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 351, 1113
BfaI CTAG 1 cut(s) 422
BfoI RGCGCY 1 cut(s) 1136
BglII AGATCT 1 cut(s) 892
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 324
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 145
BmtI GCTAGC 1 cut(s) 425
BmuI ACTGGG 1 cut(s) 72
BpuEI CTTGAG 2 cut(s) 494, 1095
BsaBI GATNNNNATC 2 cut(s) 134, 468
BsaWI WCCGGW 3 cut(s) 190, 330, 1033
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bse118I RCCGGY 2 cut(s) 592, 949
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 64
Bse8I GATNNNNATC 2 cut(s) 134, 468
BseAI TCCGGA 1 cut(s) 190
BseBI CCWGG 1 cut(s) 324
BseGI GGATG 3 cut(s) 199, 244, 646
BseJI GATNNNNATC 2 cut(s) 134, 468
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 2 cut(s) 281, 689
BseXI GCAGC 1 cut(s) 412
Bsh1285I CGRYCG 1 cut(s) 954
BsiEI CGRYCG 1 cut(s) 954
BsiSI CCGG 5 cut(s) 191, 331, 593, 950, 1034
BsmAI GTCTC 2 cut(s) 351, 1113
BsmI GAATGC 1 cut(s) 871
Bsp13I TCCGGA 1 cut(s) 190
Bsp143I GATC 5 cut(s) 135, 469, 712, 892, 1005
BspACI CCGC 2 cut(s) 43, 1052
BspCNI CTCAG 1 cut(s) 502
BspEI TCCGGA 1 cut(s) 190
BspOI GCTAGC 1 cut(s) 425
BspPI GGATC 3 cut(s) 477, 720, 1013
BsrDI GCAATG 1 cut(s) 64
BsrFI RCCGGY 2 cut(s) 592, 949
BsrI ACTGG 1 cut(s) 78
BssAI RCCGGY 2 cut(s) 592, 949
BssMI GATC 5 cut(s) 135, 469, 712, 892, 1005
BssNAI GTATAC 1 cut(s) 1019
Bst1107I GTATAC 1 cut(s) 1019
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 456
BstAPI GCANNNNNTGC 1 cut(s) 868
BstC8I GCNNGC 2 cut(s) 45, 423
BstDEI CTNAG 2 cut(s) 258, 489
BstF5I GGATG 3 cut(s) 199, 244, 646
BstH2I RGCGCY 1 cut(s) 1136
BstHHI GCGC 2 cut(s) 592, 1135
BstKTI GATC 5 cut(s) 138, 472, 715, 895, 1008
BstMAI GTCTC 2 cut(s) 351, 1113
BstMBI GATC 5 cut(s) 135, 469, 712, 892, 1005
BstMCI CGRYCG 1 cut(s) 954
BstMWI GCNNNNNNNGC 1 cut(s) 868
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 412
BstX2I RGATCY 2 cut(s) 469, 892
BstXI CCANNNNNNTGG 1 cut(s) 1002
BstYI RGATCY 2 cut(s) 469, 892
BstZ17I GTATAC 1 cut(s) 1019
BtsCI GGATG 3 cut(s) 199, 244, 646
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 2 cut(s) 45, 423
CfoI GCGC 2 cut(s) 592, 1135
Cfr10I RCCGGY 2 cut(s) 592, 949
Csp6I GTAC 1 cut(s) 412
CviAII CATG 3 cut(s) 368, 863, 1002
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 2 cut(s) 258, 489
DpnI GATC 5 cut(s) 137, 471, 714, 894, 1007
DpnII GATC 5 cut(s) 135, 469, 712, 892, 1005
DraI TTTAAA 1 cut(s) 918
EciI GGCGGA 1 cut(s) 1067
Eco32I GATATC 1 cut(s) 1140
EcoRII CCWGG 1 cut(s) 322
EcoRV GATATC 1 cut(s) 1140
FaeI CATG 3 cut(s) 371, 866, 1005
FatI CATG 3 cut(s) 367, 862, 1001
FauI CCCGC 1 cut(s) 36
FblI GTMKAC 1 cut(s) 1018
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 3 cut(s) 206, 251, 653
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 422
GlaI GCGC 2 cut(s) 591, 1134
GluI GCNGC 1 cut(s) 426
HaeII RGCGCY 1 cut(s) 1136
HapII CCGG 5 cut(s) 191, 331, 593, 950, 1034
HhaI GCGC 2 cut(s) 592, 1135
Hin1II CATG 3 cut(s) 371, 866, 1005
Hin6I GCGC 2 cut(s) 590, 1133
HinP1I GCGC 2 cut(s) 590, 1133
HindIII AAGCTT 2 cut(s) 842, 849
HinfI GANTC 5 cut(s) 88, 182, 344, 557, 741
HpaII CCGG 5 cut(s) 191, 331, 593, 950, 1034
HphI GGTGA 4 cut(s) 68, 246, 625, 1018
Hpy166II GTNNAC 2 cut(s) 254, 1019
Hpy188I TCNGA 3 cut(s) 22, 93, 877
Hpy188III TCNNGA 6 cut(s) 179, 191, 277, 473, 541, 1112
Hpy8I GTNNAC 2 cut(s) 254, 1019
HpyAV CCTTC 3 cut(s) 22, 229, 796
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4IV ACGT 3 cut(s) 248, 281, 1096
HpyCH4V TGCA 2 cut(s) 671, 871
HpyF10VI GCNNNNNNNGC 1 cut(s) 868
HpyF3I CTNAG 2 cut(s) 258, 489
HpySE526I ACGT 3 cut(s) 248, 281, 1096
Hsp92II CATG 3 cut(s) 371, 866, 1005
HspAI GCGC 2 cut(s) 590, 1133
Kpn2I TCCGGA 1 cut(s) 190
Kzo9I GATC 5 cut(s) 135, 469, 712, 892, 1005
LmnI GCTCC 1 cut(s) 904
LpnPI CCDG 9 cut(s) 91, 204, 309, 336, 344, 519, 606, 963, 1047
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 422
MaeII ACGT 3 cut(s) 248, 281, 1096
MaeIII GTNAC 1 cut(s) 505
MalI GATC 5 cut(s) 137, 471, 714, 894, 1007
MboI GATC 5 cut(s) 135, 469, 712, 892, 1005
MboII GAAGA 6 cut(s) 157, 265, 595, 661, 824, 902
MflI RGATCY 2 cut(s) 469, 892
MlyI GAGTC 2 cut(s) 97, 353
MnlI CCTC 8 cut(s) 259, 297, 371, 454, 469, 491, 631, 667
MroI TCCGGA 1 cut(s) 190
MroXI GAANNNNTTC 2 cut(s) 36, 1063
MseI TTAA 7 cut(s) 15, 140, 150, 224, 824, 917, 1073
MslI CAYNNNNRTG 3 cut(s) 333, 578, 876
MspI CCGG 5 cut(s) 191, 331, 593, 950, 1034
MspR9I CCNGG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 871
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 868
NdeII GATC 5 cut(s) 135, 469, 712, 892, 1005
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 3 cut(s) 371, 866, 1005
OliI CACNNNNGTG 1 cut(s) 333
PctI GAATGC 1 cut(s) 871
PdmI GAANNNNTTC 2 cut(s) 36, 1063
PfeI GAWTC 3 cut(s) 182, 557, 741
PflFI GACNNNGTC 1 cut(s) 1105
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 2 cut(s) 96, 352
PpsI GAGTC 2 cut(s) 96, 352
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PsuI RGATCY 2 cut(s) 469, 892
PsyI GACNNNGTC 1 cut(s) 1105
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 3 cut(s) 333, 578, 876
SaqAI TTAA 7 cut(s) 15, 140, 150, 224, 824, 917, 1073
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 5 cut(s) 135, 469, 712, 892, 1005
SchI GAGTC 2 cut(s) 97, 353
ScrFI CCNGG 1 cut(s) 324
SfaNI GCATC 1 cut(s) 145
SmiMI CAYNNNNRTG 3 cut(s) 333, 578, 876
SmlI CTYRAG 2 cut(s) 473, 1110
SmoI CTYRAG 2 cut(s) 473, 1110
SsiI CCGC 2 cut(s) 43, 1052
SspI AATATT 1 cut(s) 771
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 456
TaiI ACGT 3 cut(s) 251, 284, 1099
TaqI TCGA 5 cut(s) 229, 540, 744, 954, 1100
TfiI GAWTC 3 cut(s) 182, 557, 741
Tru1I TTAA 7 cut(s) 15, 140, 150, 224, 824, 917, 1073
Tru9I TTAA 7 cut(s) 15, 140, 150, 224, 824, 917, 1073
TscAI CASTG 1 cut(s) 319
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 8 cut(s) 41, 53, 111, 596, 672, 688, 777, 854
TspRI CASTG 1 cut(s) 319
Tth111I GACNNNGTC 1 cut(s) 1105
XapI RAATTY 3 cut(s) 60, 386, 965
XmiI GTMKAC 1 cut(s) 1018
XmnI GAANNNNTTC 2 cut(s) 36, 1063
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.