pycom11g18320

D-arabinono-1,4-lactone oxidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000215
Physical Location & Seq
Forward (+)
20489784 .. 20491646
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g18320.8

Sequence Viewer

Length: 1374 bp
ATGATAATTTTGATAGGAACCTTTTCATGTGTAGGTAATTTTTGCAAACAAATTATCGAAGCCATGTCTTTTAGGAAACAACTCTCTAGTACTATGAAAAGGAAAAAAAGGCAAAGGATAACGAAATTGGCGCAAAATGAATCGGTTGAAAATTTAAGAGAAAATGATGTTAGTGAAAAGTCACAAAATGTTGTTGAGGAGTCTCATGATCATGAAATTGGTGGTTATGTAGAGAAAGATGTTAATGACGAGTCTCATGACCATGAAAATGGTGGTGATTTAGAGGAAAATGTTGGTGATGAGTCTCAAGACCATGACAATGGTGGTGATGAAAATGTTGAATCTCCTGAACCTATTTTCCATTTAAACATTTATAATCCAAGAGTTTGGGATGGTCTTAATGCAGAAATGAGAGACTTCCTTGACAAACTCTCTAGAAAATTTTCCTCACATTACCATGATCGATCAAATTACAAACGGGTGAAATTTATGATAGGAAATGGCTCGTGTACTCAAAAGAGTTGGATAAAGTCTTTTGCTTTTGTTGTAAATTGTTTAAAAACAATTGCCCCAAAAAGTGAGTTAGCAAAAGATGGAATTAGTGATGGAGACATCTTGGTGAGAAGATTGACCAACATGAAAAGAGTTAAGAGCATCTCACTAATTCGAGAACTTGGGTTGGAATTTCAAATGCGAATCAAGAAAGAGACAAATCATTGGAAACAATTAGCATTTTGTGGAACAAAAGAAAGACCTTATGAAGACTCTAATGGCAAATTCTTAGGTTTACTTGAAATGATTGCGGGAGATCATCATTATTTGAGCCATAAAATCCAAAATGAGTTGATAGCTACTGTAGCTTCAAAAGTCAAAACCACAATCATTAAAAAAGTAAAAGAAGCAAGTCATGTGGACCAGATAACTTTAATTTTAAGAAGTGTTGACTTGTCAAGTAGGTCAATAAATATAAGGGAGTATTGCATGGGTTTAGGGACTATGTGCCCCCCATTCCCCCTAACTTCGACTGGGTTCCATCCCTCGTTAAATATTTTTTTAAACATATGTTTCTGTATTAACAAGGGACCAGCCCTGCCCATCAATAACAATATGATATCGGTTCATTTGCCATTAGGAGGTCTTGACCGGAGAGGGTTAGATTCGAGATGGAGTGGTGGCGAAGATTCTGTGTCGGAGCAAGATTGGTGCTACAAAAAGGAAAGAGTCGTTAGGAGGTGGTCAATAGAAACGCGAAACAAAAAAACTCAAAAGAAAACATGGCAAAAGGAAAGTTGTTTAGCAGCAAAAATGGAGTCGTACAGAGTGGAAAATGGAGATGCAGAGAGAGAAAGGTTGCTGGAGAAGAAGATGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ALO FAD_binding_4

Protein Analysis

458

Amino Acids

52.36

Weight (kDa)

8.6

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AccII CGCG 1 cut(s) 1249
AciI CCGC 1 cut(s) 803
AcsI RAATTY 5 cut(s) 151, 440, 485, 683, 776
AfaI GTAC 3 cut(s) 91, 511, 1316
AfiI CCNNNNNNNGG 1 cut(s) 1133
AgsI TTSAA 5 cut(s) 149, 341, 689, 794, 864
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
AluBI AGCT 2 cut(s) 851, 860
AluI AGCT 2 cut(s) 851, 860
Alw26I GTCTC 6 cut(s) 207, 258, 309, 408, 603, 701
ApeKI GCWGC 1 cut(s) 1298
ApoI RAATTY 5 cut(s) 151, 440, 485, 683, 776
ArsI GACNNNNNNTTYG 2 cut(s) 1295, 1327
Asp700I GAANNNNTTC 2 cut(s) 22, 442
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 2 cut(s) 913, 1082
AsuHPI GGTGA 5 cut(s) 287, 308, 338, 493, 631
AvaII GGWCC 2 cut(s) 913, 1082
BaeGI GKGCMC 1 cut(s) 1004
BauI CACGAG 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 768
BbvI GCAGC 1 cut(s) 1310
BccI CCATC 7 cut(s) 386, 587, 599, 1041, 1103, 1158, 1360
BclI TGATCA 1 cut(s) 208
BcoDI GTCTC 6 cut(s) 207, 258, 309, 408, 603, 701
BfaI CTAG 2 cut(s) 87, 435
BfmI CTRYAG 1 cut(s) 855
BisI GCNGC 1 cut(s) 1299
BlsI GCNGC 1 cut(s) 1300
BmcAI AGTACT 1 cut(s) 91
Bme18I GGWCC 2 cut(s) 913, 1082
BmgT120I GGNCC 2 cut(s) 913, 1082
BmiI GGNNCC 3 cut(s) 19, 1031, 1083
BmrI ACTGGG 1 cut(s) 1035
BmsI GCATC 2 cut(s) 663, 1324
BmuI ACTGGG 1 cut(s) 1035
BpiI GAAGAC 1 cut(s) 768
BpuEI CTTGAG 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 463
BsaWI WCCGGW 1 cut(s) 1143
Bsc4I CCNNNNNNNGG 1 cut(s) 1133
Bse1I ACTGG 1 cut(s) 1030
BseCI ATCGAT 1 cut(s) 463
BseGI GGATG 2 cut(s) 397, 1033
BseLI CCNNNNNNNGG 1 cut(s) 1133
BseNI ACTGG 1 cut(s) 1030
BseRI GAGGAG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 1004
BseXI GCAGC 1 cut(s) 1310
Bsh1236I CGCG 1 cut(s) 1249
BshVI ATCGAT 1 cut(s) 463
BsiSI CCGG 1 cut(s) 1144
BslFI GGGAC 2 cut(s) 1006, 1095
BslI CCNNNNNNNGG 1 cut(s) 1133
BsmAI GTCTC 6 cut(s) 207, 258, 309, 408, 603, 701
BsmFI GGGAC 2 cut(s) 1006, 1095
Bsp1286I GDGCHC 1 cut(s) 1004
Bsp143I GATC 4 cut(s) 208, 460, 464, 808
BspACI CCGC 1 cut(s) 803
BspDI ATCGAT 1 cut(s) 463
BspFNI CGCG 1 cut(s) 1249
BspHI TCATGA 3 cut(s) 205, 211, 256
BspLI GGNNCC 3 cut(s) 19, 1031, 1083
BsrI ACTGG 1 cut(s) 1030
BssMI GATC 4 cut(s) 208, 460, 464, 808
BssSI CACGAG 1 cut(s) 505
Bst2BI CACGAG 1 cut(s) 505
Bst4CI ACNGT 1 cut(s) 856
BstDEI CTNAG 1 cut(s) 781
BstF5I GGATG 2 cut(s) 397, 1033
BstFNI CGCG 1 cut(s) 1249
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 4 cut(s) 211, 463, 467, 811
BstMAI GTCTC 6 cut(s) 207, 258, 309, 408, 603, 701
BstMBI GATC 4 cut(s) 208, 460, 464, 808
BstMWI GCNNNNNNNGC 1 cut(s) 857
BstSFI CTRYAG 1 cut(s) 855
BstSLI GKGCMC 1 cut(s) 1004
BstUI CGCG 1 cut(s) 1249
BstV1I GCAGC 1 cut(s) 1310
BstV2I GAAGAC 1 cut(s) 768
BstXI CCANNNNNNTGG 3 cut(s) 269, 320, 387
Bsu15I ATCGAT 1 cut(s) 463
BsuTUI ATCGAT 1 cut(s) 463
BtsCI GGATG 2 cut(s) 397, 1033
CciI TCATGA 3 cut(s) 205, 211, 256
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 913, 1082
ClaI ATCGAT 1 cut(s) 463
Csp6I GTAC 3 cut(s) 90, 510, 1315
CspCI CAANNNNNGTGG 2 cut(s) 891, 926
CviJI RGCY 6 cut(s) 62, 504, 825, 851, 860, 1088
CviKI_1 RGCY 6 cut(s) 62, 504, 825, 851, 860, 1088
CviQI GTAC 3 cut(s) 90, 510, 1315
DdeI CTNAG 1 cut(s) 781
DpnI GATC 4 cut(s) 210, 462, 466, 810
DpnII GATC 4 cut(s) 208, 460, 464, 808
DraI TTTAAA 3 cut(s) 366, 558, 1056
Eco32I GATATC 1 cut(s) 1113
Eco47I GGWCC 2 cut(s) 913, 1082
EcoRV GATATC 1 cut(s) 1113
FaqI GGGAC 2 cut(s) 1006, 1095
FauI CCCGC 1 cut(s) 796
FauNDI CATATG 1 cut(s) 1061
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 1299
FokI GGATG 2 cut(s) 404, 1020
Fsp4HI GCNGC 1 cut(s) 1299
FspBI CTAG 2 cut(s) 87, 435
GlaI GCGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 1299
HapII CCGG 1 cut(s) 1144
HhaI GCGC 1 cut(s) 133
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HpaII CCGG 1 cut(s) 1144
HphI GGTGA 5 cut(s) 287, 308, 338, 493, 631
Hpy166II GTNNAC 4 cut(s) 510, 788, 913, 943
Hpy188I TCNGA 1 cut(s) 1192
Hpy8I GTNNAC 4 cut(s) 510, 788, 913, 943
HpyCH4III ACNGT 1 cut(s) 856
HpyCH4V TGCA 4 cut(s) 45, 404, 981, 1337
HpyF10VI GCNNNNNNNGC 1 cut(s) 857
HpyF3I CTNAG 1 cut(s) 781
HspAI GCGC 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 4 cut(s) 208, 460, 464, 808
LmnI GCTCC 1 cut(s) 1192
LpnPI CCDG 7 cut(s) 360, 929, 1011, 1098, 1103, 1157, 1340
Lsp1109I GCAGC 1 cut(s) 1310
LweI GCATC 2 cut(s) 663, 1324
MaeI CTAG 2 cut(s) 87, 435
MaeIII GTNAC 1 cut(s) 180
MalI GATC 4 cut(s) 210, 462, 466, 810
MboI GATC 4 cut(s) 208, 460, 464, 808
MboII GAAGA 4 cut(s) 636, 773, 1190, 1372
MfeI CAATTG 1 cut(s) 564
MhlI GDGCHC 1 cut(s) 1004
MlyI GAGTC 6 cut(s) 209, 260, 311, 758, 1230, 1319
MmeI TCCRAC 3 cut(s) 503, 660, 1170
MnlI CCTC 7 cut(s) 190, 277, 457, 1048, 1127, 1142, 1224
MroXI GAANNNNTTC 2 cut(s) 22, 442
MslI CAYNNNNRTG 6 cut(s) 210, 261, 267, 318, 456, 617
MspI CCGG 1 cut(s) 1144
MunI CAATTG 1 cut(s) 564
MvnI CGCG 1 cut(s) 1249
MwoI GCNNNNNNNGC 1 cut(s) 857
NdeI CATATG 1 cut(s) 1061
NdeII GATC 4 cut(s) 208, 460, 464, 808
NlaIV GGNNCC 3 cut(s) 19, 1031, 1083
NmuCI GTSAC 1 cut(s) 180
PagI TCATGA 3 cut(s) 205, 211, 256
PdmI GAANNNNTTC 2 cut(s) 22, 442
PfeI GAWTC 5 cut(s) 140, 341, 696, 1157, 1181
PkrI GCNGC 1 cut(s) 1300
PleI GAGTC 6 cut(s) 208, 259, 310, 758, 1229, 1318
PpsI GAGTC 6 cut(s) 208, 259, 310, 758, 1229, 1318
PsiI TTATAA 1 cut(s) 375
PspN4I GGNNCC 3 cut(s) 19, 1031, 1083
PspPI GGNCC 2 cut(s) 913, 1082
RsaI GTAC 3 cut(s) 91, 511, 1316
RsaNI GTAC 3 cut(s) 90, 510, 1315
RseI CAYNNNNRTG 6 cut(s) 210, 261, 267, 318, 456, 617
SatI GCNGC 1 cut(s) 1299
Sau3AI GATC 4 cut(s) 208, 460, 464, 808
Sau96I GGNCC 2 cut(s) 913, 1082
ScaI AGTACT 1 cut(s) 91
SchI GAGTC 6 cut(s) 209, 260, 311, 758, 1230, 1319
SduI GDGCHC 1 cut(s) 1004
SfaNI GCATC 2 cut(s) 663, 1324
SfcI CTRYAG 1 cut(s) 855
SinI GGWCC 2 cut(s) 913, 1082
SmiMI CAYNNNNRTG 6 cut(s) 210, 261, 267, 318, 456, 617
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
SsiI CCGC 1 cut(s) 803
SspI AATATT 1 cut(s) 1048
SspMI CTAG 2 cut(s) 87, 435
TaaI ACNGT 1 cut(s) 856
TaqI TCGA 5 cut(s) 57, 463, 667, 1022, 1160
TatI WGTACW 2 cut(s) 89, 509
TfiI GAWTC 5 cut(s) 140, 341, 696, 1157, 1181
TseFI GTSAC 1 cut(s) 180
TseI GCWGC 1 cut(s) 1298
Tsp45I GTSAC 1 cut(s) 180
TspDTI ATGAA 9 cut(s) 15, 110, 153, 228, 279, 345, 653, 774, 1109
VpaK11BI GGWCC 2 cut(s) 913, 1082
XapI RAATTY 5 cut(s) 151, 440, 485, 683, 776
XbaI TCTAGA 1 cut(s) 434
XcmI CCANNNNNNNNNTGG 2 cut(s) 269, 320
XmnI GAANNNNTTC 2 cut(s) 22, 442
XspI CTAG 2 cut(s) 87, 435
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.