Rroxscaffold_3G00235050

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000215
Physical Location & Seq
Reverse (-)
21773362 .. 21775664
2303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00235050.1

Sequence Viewer

Length: 324 bp
ATGTTTCAATTTTCAATTTTCTTGCTAGTTTCAATAATGTTTCCTAGGAAACAACTCTCAGGTTCTCAAAAAAGAAAAATAAAGAAAAGAGAAGAAGAAATTATTCAATCTCAACGGGGATCTTTAGATAGATATTTTGTTAAAGAAACAAATGAATCCGTTGAAAATCATGTTGAGAATTTAGTAAATGAACCTGAACTACATATTCATTCTGATGAGTTTGTAGAAAATCAGAATGAGGTGAACGAAGAACTTGGTGATATAGGTGAAAATGAAAGTGACGAAATAGAAAATAATGAAAATCCTTGTCATGACTCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

107

Amino Acids

12.62

Weight (kDa)

4.67

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 178
AgsI TTSAA 5 cut(s) 8, 15, 33, 107, 164
AlwI GGATC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 102
AspA2I CCTAGG 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 253, 269, 278
AvrII CCTAGG 1 cut(s) 44
BfaI CTAG 2 cut(s) 26, 45
BlnI CCTAGG 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 72
Bsp143I GATC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 71
BspHI TCATGA 1 cut(s) 310
BspPI GGATC 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 58
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
CciI TCATGA 1 cut(s) 310
CviAII CATG 2 cut(s) 170, 311
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 2 cut(s) 173, 314
FaiI YATR 4 cut(s) 171, 204, 263, 312
FatI CATG 2 cut(s) 169, 310
FspBI CTAG 2 cut(s) 26, 45
Hin1II CATG 2 cut(s) 173, 314
HinfI GANTC 2 cut(s) 155, 314
HphI GGTGA 3 cut(s) 253, 269, 278
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 214, 234
Hpy188III TCNNGA 2 cut(s) 311, 318
Hpy8I GTNNAC 1 cut(s) 244
HpyF3I CTNAG 1 cut(s) 58
Hsp92II CATG 2 cut(s) 173, 314
Kzo9I GATC 1 cut(s) 119
LpnPI CCDG 2 cut(s) 45, 207
MaeI CTAG 2 cut(s) 26, 45
MaeIII GTNAC 1 cut(s) 278
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 3 cut(s) 104, 107, 260
MflI RGATCY 1 cut(s) 119
MluCI AATT 4 cut(s) 8, 15, 99, 178
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 213
NdeII GATC 1 cut(s) 119
NlaIII CATG 2 cut(s) 173, 314
NmuCI GTSAC 1 cut(s) 278
PagI TCATGA 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 155
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PsrI GAACNNNNNNTAC 2 cut(s) 183, 215
PsuI RGATCY 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 1 cut(s) 119
SchI GAGTC 1 cut(s) 308
SetI ASST 4 cut(s) 64, 196, 243, 268
SgeI CNNG 9 cut(s) 34, 38, 57, 72, 128, 182, 206, 266, 318
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 4 cut(s) 8, 15, 99, 178
SspMI CTAG 2 cut(s) 26, 45
StyI CCWWGG 1 cut(s) 44
TasI AATT 4 cut(s) 8, 15, 99, 178
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 5 cut(s) 168, 197, 204, 288, 312
TspGWI ACGGA 1 cut(s) 148
XapI RAATTY 1 cut(s) 178
XmaJI CCTAGG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 2 cut(s) 26, 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.