FvH4_5g30891

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000215
Physical Location & Seq
Reverse (-)
21770791 .. 21774334
3544 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30891.t1

Sequence Viewer

Length: 1596 bp
ATGCCTCCCACTAGGAAGTTTGAGTCCGGCCATGCCAAACGCCAAAAAAAGAGAAAAGAAGAGTGTTTCAAGAAAAGTCAAAGTGGAGCTCTGGATAAATTTGTTTTCAAACGACCACAATGTGAAGAGAATCAGTCTAAAAAGAATGATATGAATTTCAATAATGTTGAAAATAATGTGGAGGATCCTATTGGGGCAGTAGATACTGAAAATGTTGAGGATCTTATGCAAGAAGAAACTATAGAAGAAGAAGATGATGCTGAAAATGTGGAGGATCCCATGCAAGAGGAACCTATGGAAGAAGAAGATGATGTGCCTATAGAGGAGCCTAGTTTGAACAGTAATGATGGTGATATTCCGTTCAACATCAATGATCCTAGAAATTGGGATAATCTTGATGCTAAATGGAGGAACTTATTGGTGAAAAATGGTCCGGTAAGAGACATGTTAACAGGGAAAGGTCCCAAAGATGGACTGAAAAGGCGTTTCTCCTCTGAATTTTACAGTAAGTACTTACCAAATGGAGAGAAGCATCATCGAGATTGGCTTGTGTATTCAAAGGATCTTGACAAAGTCTTTTGCTTCTGTTGTAAATTGTTCAAGAACAAACCACTACCAAGTCAGTTAGCACATGATGGATTAAGAGATTGGGGACATCTTGCTTTCAGCTTGAAAACACATGAGAGAAGTCCAGAGCATGTCAACAATATGTTCATTTGGGTGGATTTACGTTTAAGGCTAGAAGGTAATCAAGTCATTGACAAAGTTTTGCAGCACCAAATCAGCAAAGAGACTAAACATTGGAGGAAGGTACTACGACGATTGTTTGCAATAGTAAAATATTTGGCTAAACAGAGTTTGGCATTTCGTGGAAATAATGAGAGAATCTATGAAGAAAGTAATGGAAATTTTATGGCTTTAGTTGAAATGGTTGCTGAGTGGGATTCGACCTTGAAGGAGCATATCAGAAGGAAACAAAATCATGAGATTCAGTACCATTATCTAAGTCACAAGGTGCAAAATGAGTTGATAAAGGCAGTAGCTTCTGAAATTAAAGGTTCAATCCTACAAAAAATAAAAGAAGCCAAGTATTTTTCAGTAATACTCGATTGCACTCCTGATGTGAGCAAGCAAGAACAGATGACGCTGATATTAAGGTGTGTTGATGTCTCTACAATTCCAATAAAGGTACACGAGTATTTTGTAGAGTTTTTGGTTGTGAATGACACAACTGGTCAAGGTTTGTTTGAAGAGTTGCAAAATGTGCTACACCATCTTGATCTTGATATTGATAATGTTAGAGGGCAAGCCTATGATAACGGGTCAAACATGAAGGGGAAACACAAAGGTGTGCAAAGGAAGCTTTTGGACATCAATCCTAGAGCATTTTATACACCTTGTGGTTCTCATTCTCTCAATTTGACTCTATCAGATGTAGCAAAATGTTGTGATAAAGCAGACTTGTTTTTTTGGAGTTGTTCAACGTATTTATACATTGTTTGCAGATTCTACAAAGAGGTGGAAGATTTTGACAGACAACATATCAGAAAAAGGTTTCACTCTGAAATCTTTGTCAACTACACGGTGGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

532

Amino Acids

62.18

Weight (kDa)

6.23

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 250 - 450 1.3e-19 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 7 cut(s) 179, 192, 228, 269, 282, 368, 570
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 4 cut(s) 98, 154, 497, 907
AdeI CACNNNGTG 3 cut(s) 122, 1015, 1400
AfaI GTAC 4 cut(s) 512, 813, 995, 1191
AfiI CCNNNNNNNGG 1 cut(s) 470
AflIII ACRYGT 1 cut(s) 444
AleI CACNNNNGTG 1 cut(s) 1347
AluBI AGCT 4 cut(s) 89, 669, 1043, 1363
AluI AGCT 4 cut(s) 89, 669, 1043, 1363
Alw21I GWGCWC 1 cut(s) 91
Alw26I GTCTC 3 cut(s) 435, 785, 1174
AlwI GGATC 7 cut(s) 179, 192, 228, 269, 282, 368, 570
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 772
ApoI RAATTY 4 cut(s) 98, 154, 497, 907
AspS9I GGNCC 2 cut(s) 431, 461
AsuHPI GGTGA 2 cut(s) 362, 433
AvaII GGWCC 2 cut(s) 431, 461
BaeI ACNNNNGTAYC 2 cut(s) 1181, 1214
BamHI GGATCC 2 cut(s) 184, 274
BanII GRGCYC 1 cut(s) 91
BauI CACGAG 1 cut(s) 1193
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 784
BccI CCATC 4 cut(s) 341, 464, 629, 1281
BcoDI GTCTC 3 cut(s) 435, 785, 1174
BfaI CTAG 5 cut(s) 12, 330, 378, 740, 1380
BfmI CTRYAG 2 cut(s) 240, 318
BisI GCNGC 1 cut(s) 773
BlsI GCNGC 1 cut(s) 774
BmcAI AGTACT 1 cut(s) 512
Bme18I GGWCC 2 cut(s) 431, 461
BmgT120I GGNCC 2 cut(s) 431, 461
BmiI GGNNCC 5 cut(s) 186, 276, 291, 327, 463
BmsI GCATC 3 cut(s) 247, 388, 541
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse1I ACTGG 1 cut(s) 1237
BseLI CCNNNNNNNGG 1 cut(s) 470
BseMII CTCAG 1 cut(s) 927
BseNI ACTGG 1 cut(s) 1237
BseRI GAGGAG 2 cut(s) 338, 481
BseXI GCAGC 1 cut(s) 784
BshFI GGCC 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 91
BsiSI CCGG 2 cut(s) 27, 434
BslFI GGGAC 2 cut(s) 447, 666
BslI CCNNNNNNNGG 1 cut(s) 470
BsmAI GTCTC 3 cut(s) 435, 785, 1174
BsmFI GGGAC 2 cut(s) 447, 666
BsnI GGCC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 6 cut(s) 184, 220, 274, 373, 562, 1279
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 928
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 5 cut(s) 186, 276, 291, 327, 463
BspPI GGATC 7 cut(s) 179, 192, 228, 269, 282, 368, 570
BsrI ACTGG 1 cut(s) 1237
BssMI GATC 6 cut(s) 184, 220, 274, 373, 562, 1279
BssSI CACGAG 1 cut(s) 1193
Bst2BI CACGAG 1 cut(s) 1193
Bst4CI ACNGT 3 cut(s) 341, 506, 1585
Bst6I CTCTTC 3 cut(s) 54, 120, 1245
BstAPI GCANNNNNTGC 1 cut(s) 1264
BstC8I GCNNGC 2 cut(s) 1130, 1308
BstDEI CTNAG 2 cut(s) 936, 1004
BstKTI GATC 6 cut(s) 187, 223, 277, 376, 565, 1282
BstMAI GTCTC 3 cut(s) 435, 785, 1174
BstMBI GATC 6 cut(s) 184, 220, 274, 373, 562, 1279
BstMWI GCNNNNNNNGC 2 cut(s) 1264, 1360
BstNSI RCATGY 2 cut(s) 448, 701
BstSFI CTRYAG 2 cut(s) 240, 318
BstV1I GCAGC 1 cut(s) 784
BstX2I RGATCY 4 cut(s) 184, 220, 274, 562
BstYI RGATCY 4 cut(s) 184, 220, 274, 562
BsuRI GGCC 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 1130, 1308
CciI TCATGA 1 cut(s) 982
Cfr13I GGNCC 2 cut(s) 431, 461
CseI GACGC 1 cut(s) 1153
Csp6I GTAC 4 cut(s) 511, 812, 994, 1190
CviAII CATG 8 cut(s) 32, 280, 445, 632, 680, 698, 983, 1330
CviQI GTAC 4 cut(s) 511, 812, 994, 1190
DdeI CTNAG 2 cut(s) 936, 1004
DpnI GATC 6 cut(s) 186, 222, 276, 375, 564, 1281
DpnII GATC 6 cut(s) 184, 220, 274, 373, 562, 1279
DraIII CACNNNGTG 3 cut(s) 122, 1015, 1400
EaeI YGGCCR 1 cut(s) 28
Eam1104I CTCTTC 3 cut(s) 54, 120, 1245
EarI CTCTTC 3 cut(s) 54, 120, 1245
Ecl136II GAGCTC 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 431, 461
Eco53kI GAGCTC 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 461
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 8 cut(s) 35, 283, 448, 635, 683, 701, 986, 1333
FaqI GGGAC 2 cut(s) 447, 666
FatI CATG 8 cut(s) 31, 279, 444, 631, 679, 697, 982, 1329
Fnu4HI GCNGC 1 cut(s) 773
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 773
FspBI CTAG 5 cut(s) 12, 330, 378, 740, 1380
GluI GCNGC 1 cut(s) 773
HaeIII GGCC 1 cut(s) 30
HapII CCGG 2 cut(s) 27, 434
HgaI GACGC 1 cut(s) 1153
Hin1II CATG 8 cut(s) 35, 283, 448, 635, 683, 701, 986, 1333
HincII GTYRAC 3 cut(s) 450, 703, 1576
HindII GTYRAC 3 cut(s) 450, 703, 1576
HindIII AAGCTT 1 cut(s) 1361
HinfI GANTC 7 cut(s) 23, 130, 885, 944, 988, 1423, 1506
HpaI GTTAAC 1 cut(s) 450
HpaII CCGG 2 cut(s) 27, 434
HphI GGTGA 2 cut(s) 362, 433
Hpy166II GTNNAC 4 cut(s) 450, 703, 1192, 1576
Hpy188I TCNGA 6 cut(s) 496, 968, 1048, 1432, 1547, 1564
Hpy8I GTNNAC 4 cut(s) 450, 703, 1192, 1576
Hpy99I CGWCG 1 cut(s) 822
HpyAV CCTTC 5 cut(s) 737, 802, 949, 963, 1327
HpyCH4III ACNGT 3 cut(s) 341, 506, 1585
HpyCH4IV ACGT 2 cut(s) 730, 1484
HpyCH4V TGCA 9 cut(s) 229, 283, 772, 830, 1018, 1113, 1258, 1354, 1503
HpyF10VI GCNNNNNNNGC 2 cut(s) 1264, 1360
HpyF3I CTNAG 2 cut(s) 936, 1004
HpySE526I ACGT 2 cut(s) 730, 1484
Hsp92II CATG 8 cut(s) 35, 283, 448, 635, 683, 701, 986, 1333
KspAI GTTAAC 1 cut(s) 450
Kzo9I GATC 6 cut(s) 184, 220, 274, 373, 562, 1279
LmnI GCTCC 3 cut(s) 86, 325, 958
LpnPI CCDG 7 cut(s) 40, 77, 438, 447, 705, 1131, 1218
Lsp1109I GCAGC 1 cut(s) 784
LweI GCATC 3 cut(s) 247, 388, 541
MaeI CTAG 5 cut(s) 12, 330, 378, 740, 1380
MaeII ACGT 2 cut(s) 730, 1484
MaeIII GTNAC 1 cut(s) 1007
MalI GATC 6 cut(s) 186, 222, 276, 375, 564, 1281
MboI GATC 6 cut(s) 184, 220, 274, 373, 562, 1279
MflI RGATCY 4 cut(s) 184, 220, 274, 562
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 9 cut(s) 98, 154, 382, 497, 593, 907, 1050, 1176, 1417
MlyI GAGTC 2 cut(s) 32, 1417
MseI TTAA 5 cut(s) 449, 641, 734, 1053, 1154
MslI CAYNNNNRTG 2 cut(s) 719, 1347
MspI CCGG 2 cut(s) 27, 434
MwoI GCNNNNNNNGC 2 cut(s) 1264, 1360
NdeII GATC 6 cut(s) 184, 220, 274, 373, 562, 1279
NlaIII CATG 8 cut(s) 35, 283, 448, 635, 683, 701, 986, 1333
NlaIV GGNNCC 5 cut(s) 186, 276, 291, 327, 463
NmuCI GTSAC 1 cut(s) 1007
NspI RCATGY 2 cut(s) 448, 701
OliI CACNNNNGTG 1 cut(s) 1347
PagI TCATGA 1 cut(s) 982
PciI ACATGT 1 cut(s) 444
PfeI GAWTC 5 cut(s) 130, 885, 944, 988, 1506
PflFI GACNNNGTC 1 cut(s) 572
PkrI GCNGC 1 cut(s) 774
PleI GAGTC 2 cut(s) 31, 1417
PpsI GAGTC 2 cut(s) 31, 1417
PpuMI RGGWCCY 1 cut(s) 461
PscI ACATGT 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 461
PspN4I GGNNCC 5 cut(s) 186, 276, 291, 327, 463
PspPI GGNCC 2 cut(s) 431, 461
PspPPI RGGWCCY 1 cut(s) 461
PsuI RGATCY 4 cut(s) 184, 220, 274, 562
PsyI GACNNNGTC 1 cut(s) 572
RsaI GTAC 4 cut(s) 512, 813, 995, 1191
RsaNI GTAC 4 cut(s) 511, 812, 994, 1190
RseI CAYNNNNRTG 2 cut(s) 719, 1347
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 5 cut(s) 449, 641, 734, 1053, 1154
SatI GCNGC 1 cut(s) 773
Sau3AI GATC 6 cut(s) 184, 220, 274, 373, 562, 1279
Sau96I GGNCC 2 cut(s) 431, 461
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 2 cut(s) 32, 1417
SduI GDGCHC 1 cut(s) 91
SfaNI GCATC 3 cut(s) 247, 388, 541
SfcI CTRYAG 2 cut(s) 240, 318
SinI GGWCC 2 cut(s) 431, 461
SmiMI CAYNNNNRTG 2 cut(s) 719, 1347
Sse9I AATT 9 cut(s) 98, 154, 382, 497, 593, 907, 1050, 1176, 1417
SspI AATATT 1 cut(s) 842
SspMI CTAG 5 cut(s) 12, 330, 378, 740, 1380
SstI GAGCTC 1 cut(s) 91
TaaI ACNGT 3 cut(s) 341, 506, 1585
TaiI ACGT 2 cut(s) 733, 1487
TaqI TCGA 3 cut(s) 538, 947, 1107
TasI AATT 9 cut(s) 98, 154, 382, 497, 593, 907, 1050, 1176, 1417
TatI WGTACW 1 cut(s) 510
TfiI GAWTC 5 cut(s) 130, 885, 944, 988, 1506
Tru1I TTAA 5 cut(s) 449, 641, 734, 1053, 1154
Tru9I TTAA 5 cut(s) 449, 641, 734, 1053, 1154
TseFI GTSAC 1 cut(s) 1007
TseI GCWGC 1 cut(s) 772
Tsp45I GTSAC 1 cut(s) 1007
TspDTI ATGAA 4 cut(s) 167, 703, 906, 1346
TspGWI ACGGA 1 cut(s) 348
Tth111I GACNNNGTC 1 cut(s) 572
VpaK11BI GGWCC 2 cut(s) 431, 461
XapI RAATTY 4 cut(s) 98, 154, 497, 907
XceI RCATGY 2 cut(s) 448, 701
XspI CTAG 5 cut(s) 12, 330, 378, 740, 1380
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.