Rroxscaffold_2G00084750

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000215
Physical Location & Seq
Forward (+)
7258692 .. 7263177
4486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084750.1

Sequence Viewer

Length: 294 bp
ATGTTGATGACCCGAGTAATTGGGATAAGATTGACTACAACATCGAGAGACTTTTTGGTTGAAAGAGGTCCTCAAAGAGATCATGATTACAAGTTTCCCAAAGATAGTAGAGGTAGACATTTTTCTTCTCAACATTTCTTTCGATATTTACGAAACGGTGAGAAGCAAGATCGAAATTGGCTCGAGCAGAAAATTAACTTGGGCAACATAGCCGGTGTAGGATACAAAGATTGGAAGACCTTGGTTGGAGGCTTAAGGGTCATGAAACAAGTACTGTGGATGCTTATTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

97

Amino Acids

11.55

Weight (kDa)

10.51

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 115
AfaI GTAC 1 cut(s) 273
AflII CTTAAG 1 cut(s) 253
AgsI TTSAA 1 cut(s) 62
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
Alw26I GTCTC 1 cut(s) 42
Ama87I CYCGRG 2 cut(s) 12, 182
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 170
AvaI CYCGRG 2 cut(s) 12, 182
AvaII GGWCC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 242
BciVI GTATCC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 42
BfrI CTTAAG 1 cut(s) 253
BfuI GTATCC 1 cut(s) 215
BmcAI AGTACT 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 68
BmeT110I CYCGRG 2 cut(s) 12, 182
BmgT120I GGNCC 1 cut(s) 68
BmsI GCATC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 240
Bse118I RCCGGY 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 285
BsiHKCI CYCGRG 2 cut(s) 12, 182
BsiSI CCGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 42
BsoBI CYCGRG 2 cut(s) 12, 182
Bsp143I GATC 2 cut(s) 79, 169
BspHI TCATGA 2 cut(s) 82, 261
BspTI CTTAAG 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 79, 169
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 158, 276
BstAFI CTTAAG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 285
BstKTI GATC 2 cut(s) 82, 172
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 79, 169
BstV2I GAAGAC 1 cut(s) 242
BsuI GTATCC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 285
CciI TCATGA 2 cut(s) 82, 261
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 272
CspCI CAANNNNNGTGG 2 cut(s) 257, 292
CviAII CATG 2 cut(s) 83, 262
CviJI RGCY 3 cut(s) 181, 212, 252
CviKI_1 RGCY 3 cut(s) 181, 212, 252
CviQI GTAC 1 cut(s) 272
DpnI GATC 2 cut(s) 81, 171
DpnII GATC 2 cut(s) 79, 169
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 68
Eco88I CYCGRG 2 cut(s) 12, 182
EcoO109I RGGNCCY 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 2 cut(s) 86, 265
FaiI YATR 4 cut(s) 84, 209, 263, 292
FatI CATG 2 cut(s) 82, 261
FblI GTMKAC 1 cut(s) 115
HapII CCGG 1 cut(s) 213
Hin1II CATG 2 cut(s) 86, 265
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 116
Hpy188III TCNNGA 3 cut(s) 45, 83, 262
Hpy8I GTNNAC 1 cut(s) 116
HpyCH4III ACNGT 2 cut(s) 158, 276
Hsp92II CATG 2 cut(s) 86, 265
Kzo9I GATC 2 cut(s) 79, 169
LpnPI CCDG 1 cut(s) 226
LweI GCATC 1 cut(s) 270
MalI GATC 2 cut(s) 81, 171
MboI GATC 2 cut(s) 79, 169
MboII GAAGA 2 cut(s) 117, 247
MluCI AATT 3 cut(s) 18, 175, 192
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 4 cut(s) 59, 81, 104, 242
MseI TTAA 2 cut(s) 195, 254
MspCI CTTAAG 1 cut(s) 253
MspI CCGG 1 cut(s) 213
NdeII GATC 2 cut(s) 79, 169
NlaIII CATG 2 cut(s) 86, 265
PaeR7I CTCGAG 1 cut(s) 182
PagI TCATGA 2 cut(s) 82, 261
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
PspPI GGNCC 1 cut(s) 68
PspPPI RGGWCCY 1 cut(s) 68
PspXI VCTCGAGB 1 cut(s) 182
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SaqAI TTAA 2 cut(s) 195, 254
Sau3AI GATC 2 cut(s) 79, 169
Sau96I GGNCC 1 cut(s) 68
ScaI AGTACT 1 cut(s) 273
SetI ASST 3 cut(s) 70, 115, 242
SfaNI GCATC 1 cut(s) 270
Sfr274I CTCGAG 1 cut(s) 182
SinI GGWCC 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 182
SmlI CTYRAG 2 cut(s) 182, 253
SmoI CTYRAG 2 cut(s) 182, 253
Sse9I AATT 3 cut(s) 18, 175, 192
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 158, 276
TaqI TCGA 4 cut(s) 44, 142, 172, 183
TasI AATT 3 cut(s) 18, 175, 192
TatI WGTACW 1 cut(s) 271
Tru1I TTAA 2 cut(s) 195, 254
Tru9I TTAA 2 cut(s) 195, 254
TspDTI ATGAA 1 cut(s) 278
Vha464I CTTAAG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 68
XhoI CTCGAG 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 115
ZrmI AGTACT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.