Rorug07G0263200

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000215
Physical Location & Seq
Forward (+)
24730816 .. 24733174
2359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0263200.1

Sequence Viewer

Length: 2292 bp
ATGAACGAGACAGATGAGGGAAGAGCTTCTAGATTGTATTCAGAGATAATGAGAAGAAACAAAACCCTTATAATCTTGGACAACGTTTGGGGTATAATAAACCTGACAAGCATAGGAATTCCCACCTACGACAATCTTCAAAGTTGCAACTCCAAAGTCCTACTTACCACAAGGAGACAGAATGTTTGTCATGCCATGGCAAGCCAAGAAAATATCATCCTCAATAGCCTATCGAAAGAAGATTCATGGACATTGTTTGTGAAATATGCAAGAATGTCTTTTGAATCAACCGATTTCGAGGATGTCGCAAGGAAGGTAGCTGGAGAATGTGGTGGTCTACCAGTTGCATTGATAGCAGTTGCAAGGGCACTTGGAGATAAAGACTTGACAGAATGGAAACACGCAGCTCAACGGCTAGAGAAGTCGCAAGTTGCCAACCGTGAAGATGAAGGAGTTGCATTCAAATGCATAAAATTAAGCTATGATTTCTTGAAAGATGAGGACTCCAAGTCATGCTTCTTGCTTTGTTGCCTATTCCCAGAAGACTATGACATCCAAATAGAAGACTTGTTCAAGTATGGGATCGGGAAAGGATTGTTTAAAGATGCTGCCACAATCCAAGAAGCCAGAGGAGAAGCTGATTTAGTGGCCAAGCACCTTATACATTCTAGCTTGCTTTTGGATAGTGAATATGATGGCTGTGTTAGGATGCATGATGTCATCCGGGATACAGCCATTCAAATTACACAATCTGAAGATGAGGATGGATTTCTGGTAAAAGCTGGCTGTGGTTTGAAGAATTGGCCATGTCGATTGCGTGAAGGCCACTCTGCAATTTCAGTCATGAAGAATGACATTCGCGAGCTACCTAAGGAGCTGGTATGTCCGAAACTCCAAATTTTATTACTACAAGAGAATGATGATTTAGATCAGATCCCTGATACTTTCTTCAAAAATACTAGCTCACTAAGAGTCATAGATCTTAGTTACACTAGTATATCATCCCTATCCAAGTCATTTATTCACCTAAGCAATCTGCAAGGTTTGTATTTAGATTCTTGCCAGAATATATCTGACATTTCCATACTGAAAAATTTTAAGAAGCTTGAGATTCTCAGTATGAAAGAATACCCTCTAAAGGAATTGTCAACAGAAATAGGAAATTTGACCAATTTAAGGGTGTTGGATGTTAGTGGCAAGGGTTCAGTGGGTGAAGGTATCGTCAGAATTCCCCCAGGGGTGATATCAAAATTGTGTAAATTAGAAGAACTGTGCCTGCACTGTGGATTTTGGGACTGGGGGAGTAAAGTTGAGGGAGAAGGAGAAACAACTAATGTTAGCTTTGATGAGGGGTTAGGATCAATCCGAGTTGGACTTGCTTTGATATATGTATTGGTAGAGACAGGAAGACCAGAAATATTATCAGAGAATTGCGCCATCTATCCTGGCATGATGGTCCTGTATATTCACGATCTTTGGTTCTCGATACAAGCTTGGTATGTTACCGTGGTGACAAAGAATATAGAGAAGCTAGTGTATGCGAATTTCACAGGGTTAAATAACATCTTCATGGAATATCACCATGGGAGGTTACATAGTCTGAAGCATCTCTCTGTTATTGGTCCCAATGAAAGCTTGGAAGCATTGTTCCTTGTGGACATACGAAGGAGGGATCAAAATAAAGCTGTGTTCGAGAAATTGGAAGAGTTGCATCTGGACAGTATGGATTCCTTGAAAGAGTTATGTCCCGGTGAATTACCATCTAGGTCTCTCTGGAATCTGAAGGTATTGAAGGTATGTGCTTGTCCTAACTTGGGAAATGTCCTGTTACCATCACAATTGTTACAGAGACTTTCAAATCTGAAGAACCTATATTGTAAGTGTCTGCCTGGAATGGAATATGTGTTTGGATGTGAAGGATTCGAGATAGAACAATCAAAACTGAGAAAGATGGAGATGTTTGAGCTAAATGCAGTAAAGAGCATATGTAATGGTCCTGCTCCACCTGCAATGTTCCAAGCACTTACAAGTTTGTACGTTTACCGTTGCAACTTTCTAGGAGGCCTCTTCACATTTGATGTAGCTCAATGCCTTTCTCAACTGGAAATCATTTTTTTAGAGAGTTGCCCTAATTTGGAAAGAGTAATCGAGGCAAGCAAGGAATCGGAGCTCAGTAAGAAGATCGTTCAGGTTATAAGCCATATGAGTGATAGTGATATGACCGAGTTTTTATGCATGGTTAAGTGTGCACTTGACAGCTTTGTATCCGAGAGTAATTCGGCAGAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

763

Amino Acids

85.91

Weight (kDa)

5.2

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 7 - 91 2.5e-14 NB-ARC domain
LRR_8 PF13855 296 - 355 7.7e-12 Leucine rich repeat
LRR_14 PF23598 308 - 430 1e-11 Leucine-rich repeat region
LRR_RPS2 PF23247 567 - 709 3e-20 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 71, 2195
AarI CACCTGC 1 cut(s) 2014
Acc36I ACCTGC 1 cut(s) 2014
AccI GTMKAC 1 cut(s) 337
AccII CGCG 1 cut(s) 861
AclI AACGTT 1 cut(s) 84
AclWI GGATC 4 cut(s) 590, 928, 1366, 1680
AcoI YGGCCR 2 cut(s) 648, 803
AcsI RAATTY 6 cut(s) 117, 897, 1093, 1162, 1227, 1543
AcuI CTGAAG 4 cut(s) 774, 1622, 1802, 1883
AfaI GTAC 1 cut(s) 2036
AfiI CCNNNNNNNGG 4 cut(s) 1138, 1176, 1814, 2134
AhdI GACNNNNNGTC 1 cut(s) 508
AhlI ACTAGT 1 cut(s) 992
AjnI CCWGG 3 cut(s) 1234, 1444, 1888
AjuI GAANNNNNNNTTGG 4 cut(s) 500, 532, 1890, 1922
AloI GAACNNNNNNTCC 2 cut(s) 1631, 1663
Alw21I GWGCWC 2 cut(s) 2172, 2251
Alw26I GTCTC 5 cut(s) 2, 169, 1394, 1773, 1843
Alw44I GTGCAC 1 cut(s) 2247
AlwI GGATC 4 cut(s) 590, 928, 1366, 1680
AoxI GGCC 4 cut(s) 648, 803, 823, 2062
ApaLI GTGCAC 1 cut(s) 2247
ApeKI GCWGC 2 cut(s) 404, 608
ApoI RAATTY 6 cut(s) 117, 897, 1093, 1162, 1227, 1543
ArsI GACNNNNNNTTYG 2 cut(s) 168, 200
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 1436
AspS9I GGNCC 3 cut(s) 1456, 1622, 1994
AsuC2I CCSGG 2 cut(s) 725, 1749
AsuHPI GGTGA 6 cut(s) 1016, 1223, 1252, 1522, 1571, 1763
AvaII GGWCC 3 cut(s) 1456, 1622, 1994
AxyI CCTNAGG 1 cut(s) 870
BaeGI GKGCMC 2 cut(s) 370, 2251
BalI TGGCCA 2 cut(s) 650, 805
BanII GRGCYC 1 cut(s) 2172
BbsI GAAGAC 3 cut(s) 549, 570, 1414
Bbv12I GWGCWC 2 cut(s) 2172, 2251
BbvI GCAGC 2 cut(s) 416, 595
BccI CCATC 7 cut(s) 689, 758, 1445, 1447, 1768, 1840, 1945
BceAI ACGGC 1 cut(s) 428
BciT130I CCWGG 3 cut(s) 1236, 1446, 1890
BciVI GTATCC 2 cut(s) 721, 2275
BcnI CCSGG 2 cut(s) 725, 1749
BcoDI GTCTC 5 cut(s) 2, 169, 1394, 1773, 1843
BcuI ACTAGT 1 cut(s) 992
BfaI CTAG 8 cut(s) 30, 416, 669, 960, 993, 1532, 1764, 2057
BfuAI ACCTGC 1 cut(s) 2014
BfuI GTATCC 2 cut(s) 721, 2275
BglII AGATCT 1 cut(s) 979
BisI GCNGC 2 cut(s) 405, 609
BlsI GCNGC 2 cut(s) 406, 610
Bme1390I CCNGG 5 cut(s) 725, 1236, 1446, 1749, 1890
Bme18I GGWCC 3 cut(s) 1456, 1622, 1994
BmeRI GACNNNNNGTC 1 cut(s) 508
BmgT120I GGNCC 3 cut(s) 1456, 1622, 1994
BmiI GGNNCC 1 cut(s) 1624
BmrFI CCNGG 5 cut(s) 725, 1236, 1446, 1749, 1890
BmrI ACTGGG 1 cut(s) 1306
BmsI GCATC 4 cut(s) 595, 699, 1615, 1720
BmuI ACTGGG 1 cut(s) 1306
BpiI GAAGAC 3 cut(s) 549, 570, 1414
BpmI CTGGAG 1 cut(s) 342
Bpu10I CCTNAGC 1 cut(s) 1028
BpuEI CTTGAG 1 cut(s) 1127
BpuMI CCSGG 2 cut(s) 725, 1749
BsaBI GATNNNNATC 1 cut(s) 927
BsaI GGTCTC 1 cut(s) 1773
BsaJI CCNNGG 5 cut(s) 195, 1234, 1235, 1506, 1582
Bsc4I CCNNNNNNNGG 4 cut(s) 1138, 1176, 1814, 2134
Bse1I ACTGG 3 cut(s) 341, 1301, 2106
Bse21I CCTNAGG 1 cut(s) 870
Bse3DI GCAATG 1 cut(s) 2016
Bse8I GATNNNNATC 1 cut(s) 927
BseBI CCWGG 3 cut(s) 1236, 1446, 1890
BseDI CCNNGG 5 cut(s) 195, 1234, 1235, 1506, 1582
BseGI GGATG 9 cut(s) 216, 307, 552, 714, 720, 769, 1001, 1192, 1916
BseJI GATNNNNATC 1 cut(s) 927
BseLI CCNNNNNNNGG 4 cut(s) 1138, 1176, 1814, 2134
BseMI GCAATG 1 cut(s) 2016
BseMII CTCAG 3 cut(s) 1129, 1934, 2185
BseNI ACTGG 3 cut(s) 341, 1301, 2106
BseRI GAGGAG 1 cut(s) 645
BseSI GKGCMC 2 cut(s) 370, 2251
BseXI GCAGC 2 cut(s) 416, 595
BsgI GTGCAG 1 cut(s) 1262
Bsh1236I CGCG 1 cut(s) 861
BshFI GGCC 4 cut(s) 650, 805, 825, 2064
BsiHKAI GWGCWC 2 cut(s) 2172, 2251
BsiSI CCGG 2 cut(s) 724, 1749
BslFI GGGAC 3 cut(s) 1307, 1608, 1731
BslI CCNNNNNNNGG 4 cut(s) 1138, 1176, 1814, 2134
BsmAI GTCTC 5 cut(s) 2, 169, 1394, 1773, 1843
BsmFI GGGAC 3 cut(s) 1307, 1608, 1731
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 4 cut(s) 650, 805, 825, 2064
Bso31I GGTCTC 1 cut(s) 1773
Bsp1286I GDGCHC 3 cut(s) 370, 2172, 2251
Bsp143I GATC 8 cut(s) 582, 928, 933, 979, 1358, 1471, 1672, 2181
Bsp19I CCATGG 2 cut(s) 195, 1582
Bsp68I TCGCGA 1 cut(s) 861
BspANI GGCC 4 cut(s) 650, 805, 825, 2064
BspCNI CTCAG 3 cut(s) 1128, 1935, 2184
BspFNI CGCG 1 cut(s) 861
BspHI TCATGA 1 cut(s) 843
BspLI GGNNCC 1 cut(s) 1624
BspMI ACCTGC 1 cut(s) 2014
BspPI GGATC 4 cut(s) 590, 928, 1366, 1680
BspQI GCTCTTC 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 1773
BsrDI GCAATG 1 cut(s) 2016
BsrI ACTGG 3 cut(s) 341, 1301, 2106
BssECI CCNNGG 5 cut(s) 195, 1234, 1235, 1506, 1582
BssMI GATC 8 cut(s) 582, 928, 933, 979, 1358, 1471, 1672, 2181
BssT1I CCWWGG 2 cut(s) 195, 1582
Bst2UI CCWGG 3 cut(s) 1236, 1446, 1890
Bst4CI ACNGT 6 cut(s) 440, 1272, 1283, 1507, 1721, 2045
Bst6I CTCTTC 3 cut(s) 16, 1698, 2072
BstC8I GCNNGC 6 cut(s) 202, 674, 784, 863, 1277, 2155
BstDEI CTNAG 7 cut(s) 870, 968, 983, 1028, 1115, 1943, 2171
BstDSI CCRYGG 3 cut(s) 195, 1506, 1582
BstF5I GGATG 9 cut(s) 216, 307, 552, 714, 720, 769, 1001, 1192, 1916
BstFNI CGCG 1 cut(s) 861
BstHHI GCGC 1 cut(s) 1436
BstKTI GATC 8 cut(s) 585, 931, 936, 982, 1361, 1474, 1675, 2184
BstMAI GTCTC 5 cut(s) 2, 169, 1394, 1773, 1843
BstMBI GATC 8 cut(s) 582, 928, 933, 979, 1358, 1471, 1672, 2181
BstMWI GCNNNNNNNGC 2 cut(s) 353, 2006
BstNI CCWGG 3 cut(s) 1236, 1446, 1890
BstSCI CCNGG 5 cut(s) 723, 1234, 1444, 1747, 1888
BstSLI GKGCMC 2 cut(s) 370, 2251
BstUI CGCG 1 cut(s) 861
BstV1I GCAGC 2 cut(s) 416, 595
BstV2I GAAGAC 3 cut(s) 549, 570, 1414
BstX2I RGATCY 2 cut(s) 933, 979
BstYI RGATCY 2 cut(s) 933, 979
Bsu36I CCTNAGG 1 cut(s) 870
BsuI GTATCC 2 cut(s) 721, 2275
BsuRI GGCC 4 cut(s) 650, 805, 825, 2064
BtgI CCRYGG 3 cut(s) 195, 1506, 1582
BtsCI GGATG 9 cut(s) 216, 307, 552, 714, 720, 769, 1001, 1192, 1916
BtsIMutI CAGTG 2 cut(s) 1212, 1279
BtuMI TCGCGA 1 cut(s) 861
BveI ACCTGC 1 cut(s) 2014
Cac8I GCNNGC 6 cut(s) 202, 674, 784, 863, 1277, 2155
CciI TCATGA 1 cut(s) 843
CfoI GCGC 1 cut(s) 1436
Cfr13I GGNCC 3 cut(s) 1456, 1622, 1994
Csp6I GTAC 1 cut(s) 2035
CviQI GTAC 1 cut(s) 2035
DdeI CTNAG 7 cut(s) 870, 968, 983, 1028, 1115, 1943, 2171
DpnI GATC 8 cut(s) 584, 930, 935, 981, 1360, 1473, 1674, 2183
DpnII GATC 8 cut(s) 582, 928, 933, 979, 1358, 1471, 1672, 2181
DraI TTTAAA 1 cut(s) 601
DriI GACNNNNNGTC 1 cut(s) 508
EaeI YGGCCR 2 cut(s) 648, 803
Eam1104I CTCTTC 3 cut(s) 16, 1698, 2072
Eam1105I GACNNNNNGTC 1 cut(s) 508
EarI CTCTTC 3 cut(s) 16, 1698, 2072
Ecl136II GAGCTC 1 cut(s) 2170
Eco130I CCWWGG 2 cut(s) 195, 1582
Eco147I AGGCCT 1 cut(s) 2064
Eco24I GRGCYC 1 cut(s) 2172
Eco31I GGTCTC 1 cut(s) 1773
Eco32I GATATC 1 cut(s) 1245
Eco47I GGWCC 3 cut(s) 1456, 1622, 1994
Eco53kI GAGCTC 1 cut(s) 2170
Eco57I CTGAAG 4 cut(s) 774, 1622, 1802, 1883
Eco81I CCTNAGG 1 cut(s) 870
EcoICRI GAGCTC 1 cut(s) 2170
EcoRI GAATTC 2 cut(s) 117, 1227
EcoRII CCWGG 3 cut(s) 1234, 1444, 1888
EcoRV GATATC 1 cut(s) 1245
EcoT14I CCWWGG 2 cut(s) 195, 1582
EcoT22I ATGCAT 3 cut(s) 470, 714, 2237
EcoT38I GRGCYC 1 cut(s) 2172
ErhI CCWWGG 2 cut(s) 195, 1582
FalI AAGNNNNNCTT 6 cut(s) 147, 179, 262, 294, 500, 532
FaqI GGGAC 3 cut(s) 1307, 1608, 1731
FauNDI CATATG 2 cut(s) 1985, 2202
FblI GTMKAC 1 cut(s) 337
Fnu4HI GCNGC 2 cut(s) 405, 609
FokI GGATG 9 cut(s) 203, 314, 539, 707, 721, 776, 988, 1199, 1923
FriOI GRGCYC 1 cut(s) 2172
Fsp4HI GCNGC 2 cut(s) 405, 609
FspBI CTAG 8 cut(s) 30, 416, 669, 960, 993, 1532, 1764, 2057
GlaI GCGC 1 cut(s) 1435
GluI GCNGC 2 cut(s) 405, 609
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 4 cut(s) 650, 805, 825, 2064
HapII CCGG 2 cut(s) 724, 1749
HhaI GCGC 1 cut(s) 1436
Hin6I GCGC 1 cut(s) 1434
HinP1I GCGC 1 cut(s) 1434
HincII GTYRAC 1 cut(s) 1149
HindII GTYRAC 1 cut(s) 1149
HindIII AAGCTT 3 cut(s) 1103, 1491, 1633
HpaII CCGG 2 cut(s) 724, 1749
HphI GGTGA 6 cut(s) 1016, 1223, 1252, 1522, 1571, 1763
Hpy166II GTNNAC 5 cut(s) 338, 1149, 1657, 2041, 2249
Hpy8I GTNNAC 5 cut(s) 338, 1149, 1657, 2041, 2249
HpyAV CCTTC 9 cut(s) 307, 443, 815, 1208, 1313, 1659, 1777, 1786, 1910
HpyCH4III ACNGT 6 cut(s) 440, 1272, 1283, 1507, 1721, 2045
HpyCH4IV ACGT 2 cut(s) 84, 2037
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 2006
HpyF3I CTNAG 7 cut(s) 870, 968, 983, 1028, 1115, 1943, 2171
HpySE526I ACGT 2 cut(s) 84, 2037
HspAI GCGC 1 cut(s) 1434
Kzo9I GATC 8 cut(s) 582, 928, 933, 979, 1358, 1471, 1672, 2181
LguI GCTCTTC 1 cut(s) 16
LmnI GCTCC 3 cut(s) 874, 2005, 2167
Lsp1109I GCAGC 2 cut(s) 416, 595
LweI GCATC 4 cut(s) 595, 699, 1615, 1720
MaeI CTAG 8 cut(s) 30, 416, 669, 960, 993, 1532, 1764, 2057
MaeII ACGT 2 cut(s) 84, 2037
MaeIII GTNAC 6 cut(s) 986, 1501, 1510, 1590, 1827, 1842
MalI GATC 8 cut(s) 584, 930, 935, 981, 1360, 1473, 1674, 2183
MboI GATC 8 cut(s) 582, 928, 933, 979, 1358, 1471, 1672, 2181
MfeI CAATTG 1 cut(s) 1838
MflI RGATCY 2 cut(s) 933, 979
MhlI GDGCHC 3 cut(s) 370, 2172, 2251
MlsI TGGCCA 2 cut(s) 650, 805
MluNI TGGCCA 2 cut(s) 650, 805
MlyI GAGTC 2 cut(s) 497, 981
MmeI TCCRAC 2 cut(s) 1164, 1351
Mox20I TGGCCA 2 cut(s) 650, 805
Mph1103I ATGCAT 3 cut(s) 470, 714, 2237
MroXI GAANNNNTTC 1 cut(s) 25
MscI TGGCCA 2 cut(s) 650, 805
MseI TTAA 6 cut(s) 476, 600, 1098, 1175, 1556, 2241
MslI CAYNNNNRTG 3 cut(s) 463, 1568, 2205
Msp20I TGGCCA 2 cut(s) 650, 805
MspI CCGG 2 cut(s) 724, 1749
MspR9I CCNGG 5 cut(s) 725, 1236, 1446, 1749, 1890
MunI CAATTG 1 cut(s) 1838
Mva1269I GAATGC 1 cut(s) 458
MvaI CCWGG 3 cut(s) 1236, 1446, 1890
MvnI CGCG 1 cut(s) 861
MwoI GCNNNNNNNGC 2 cut(s) 353, 2006
NciI CCSGG 2 cut(s) 725, 1749
NcoI CCATGG 2 cut(s) 195, 1582
NdeI CATATG 2 cut(s) 1985, 2202
NdeII GATC 8 cut(s) 582, 928, 933, 979, 1358, 1471, 1672, 2181
NlaIV GGNNCC 1 cut(s) 1624
NmuCI GTSAC 1 cut(s) 1510
NruI TCGCGA 1 cut(s) 861
NsiI ATGCAT 3 cut(s) 470, 714, 2237
PagI TCATGA 1 cut(s) 843
PaqCI CACCTGC 1 cut(s) 2014
PasI CCCWGGG 1 cut(s) 1235
PceI AGGCCT 1 cut(s) 2064
PciSI GCTCTTC 1 cut(s) 16
PctI GAATGC 1 cut(s) 458
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 8 cut(s) 242, 284, 1055, 1111, 1727, 1777, 1920, 2162
PfoI TCCNGGA 1 cut(s) 723
PkrI GCNGC 2 cut(s) 406, 610
PleI GAGTC 2 cut(s) 497, 980
PpsI GAGTC 2 cut(s) 497, 980
PsiI TTATAA 2 cut(s) 71, 2195
Psp124BI GAGCTC 1 cut(s) 2172
Psp1406I AACGTT 1 cut(s) 84
Psp6I CCWGG 3 cut(s) 1234, 1444, 1888
PspGI CCWGG 3 cut(s) 1234, 1444, 1888
PspN4I GGNNCC 1 cut(s) 1624
PspPI GGNCC 3 cut(s) 1456, 1622, 1994
PsuI RGATCY 2 cut(s) 933, 979
RruI TCGCGA 1 cut(s) 861
RsaI GTAC 1 cut(s) 2036
RsaNI GTAC 1 cut(s) 2035
RseI CAYNNNNRTG 3 cut(s) 463, 1568, 2205
SacI GAGCTC 1 cut(s) 2172
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 6 cut(s) 476, 600, 1098, 1175, 1556, 2241
SatI GCNGC 2 cut(s) 405, 609
Sau3AI GATC 8 cut(s) 582, 928, 933, 979, 1358, 1471, 1672, 2181
Sau96I GGNCC 3 cut(s) 1456, 1622, 1994
SchI GAGTC 2 cut(s) 497, 981
ScrFI CCNGG 5 cut(s) 725, 1236, 1446, 1749, 1890
SduI GDGCHC 3 cut(s) 370, 2172, 2251
SfaNI GCATC 4 cut(s) 595, 699, 1615, 1720
SinI GGWCC 3 cut(s) 1456, 1622, 1994
SmiMI CAYNNNNRTG 3 cut(s) 463, 1568, 2205
SmlI CTYRAG 1 cut(s) 1106
SmoI CTYRAG 1 cut(s) 1106
SpeI ACTAGT 1 cut(s) 992
SseBI AGGCCT 1 cut(s) 2064
SspI AATATT 1 cut(s) 1419
SspMI CTAG 8 cut(s) 30, 416, 669, 960, 993, 1532, 1764, 2057
SstI GAGCTC 1 cut(s) 2172
StuI AGGCCT 1 cut(s) 2064
StyD4I CCNGG 5 cut(s) 723, 1234, 1444, 1747, 1888
StyI CCWWGG 2 cut(s) 195, 1582
TaaI ACNGT 6 cut(s) 440, 1272, 1283, 1507, 1721, 2045
TaiI ACGT 2 cut(s) 87, 2040
TaqI TCGA 7 cut(s) 233, 297, 811, 1484, 1692, 1923, 2148
TaqII GACCGA 1 cut(s) 2237
TfiI GAWTC 8 cut(s) 242, 284, 1055, 1111, 1727, 1777, 1920, 2162
Tru1I TTAA 6 cut(s) 476, 600, 1098, 1175, 1556, 2241
Tru9I TTAA 6 cut(s) 476, 600, 1098, 1175, 1556, 2241
TscAI CASTG 2 cut(s) 1212, 1286
TseFI GTSAC 1 cut(s) 1510
TseI GCWGC 2 cut(s) 404, 608
Tsp45I GTSAC 1 cut(s) 1510
TspDTI ATGAA 7 cut(s) 17, 234, 462, 860, 1136, 1558, 1644
TspRI CASTG 2 cut(s) 1212, 1286
VneI GTGCAC 1 cut(s) 2247
VpaK11BI GGWCC 3 cut(s) 1456, 1622, 1994
XapI RAATTY 6 cut(s) 117, 897, 1093, 1162, 1227, 1543
XbaI TCTAGA 1 cut(s) 29
XcmI CCANNNNNNNNNTGG 1 cut(s) 1633
XmiI GTMKAC 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 8 cut(s) 30, 416, 669, 960, 993, 1532, 1764, 2057
Zsp2I ATGCAT 3 cut(s) 470, 714, 2237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.