Rw5G011030

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000215
Physical Location & Seq
Reverse (-)
12109842 .. 12110957
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011030.1

Sequence Viewer

Length: 1116 bp
ATGTCTTTTTTTGGAGTGATTCAAAGGATATATTCATTGTTTTCATCATCTACAAAGCGATGGCAAGTTTTCAAAGATTTTGTGGATGGTCTTACAGTTAAGCCATTGTCACAGACACGTTGGGAGAGTCATGTTGAAAGTGTTAAACCCATAAGATTTCAAGCTCGTAAAATAAGAGATGCTTTAATTCACTTGGCAAAAGTTAGTGAAGATCCGAAGACAAAGAGTGAAGCCGAGTCGTTAGCAATATTTGAAATGGAGAACTTTGAATTCTTGCTTGGCATGGTTATTTGGTACAAGTTATTATTTGCTATCAATACTGTTAGCAAAATTCTTCAAACTGAAGACATGCATATTGATTTTGCCATCACAGAACTAAAGAAACTTATTTCTTCTCTTGAGAATTTTAGAGAAATTGGGTTTGATGAGGCCATGATTGACGCTAAGAAGATTGCGAATGAAATGGAGATTGAAGCTGTATTTCATGAAAAGCGAGTCATTCGGAGAAAGAGACAATTTGATGAGAGTGCTAGTGAAAAAGTGACACAATCAGCTGAAGAATCATTCCGAGTTAATTACTTCACATATATAGTTGATCAAGCTCTTTCTTCACTTAGAACTCGGTTTGAACAGTTTCAAAAATATGAAGAACTTTTTGGGTTCTTATTCAATGTAGAGAAGTTGAAGTGTTCAGATAATGATAGCTTGAAGAAGTACTGTGCTAATCTTGAAACTTCTTTGACACATGGCGGGATCTCTGACATTAATGGGGAAGAACTATATTTAGAATTGAAACATCTAAAAGACACTTTACCGGAGGAGGCAAAAAGGGCAATTGAAGTGTTGAATTATTTAAAAGAGATGGAGAGTTGTTATCCAAATGTCTGGATTGCTTATAGAATTTTGTTGACTATACCAGTCACAGTTGCTTCTGCAGAAAGAAGTTTCTCAAAGTTGAAATTGATCAAATCTTATCTTCGGTCAACCATGTCACAAGAAAGATTAAACGGTTTATCTATGCTATCTATTGAAAAAAATATGGGAGATAAACTTGATTATGACAACATTATTTGTACTTTCGCAGCTAAAAATGCGAGAAGAGCAAGGTTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

371

Amino Acids

43.27

Weight (kDa)

7.03

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 260 - 347 8.9e-22 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 750
AclWI GGATC 2 cut(s) 206, 761
AcsI RAATTY 4 cut(s) 269, 330, 403, 900
AcuI CTGAAG 2 cut(s) 363, 576
AfaI GTAC 3 cut(s) 296, 716, 1075
AflIII ACRYGT 1 cut(s) 116
AjuI GAANNNNNNNTTGG 4 cut(s) 261, 293, 639, 671
AluBI AGCT 6 cut(s) 164, 476, 554, 602, 705, 1085
AluI AGCT 6 cut(s) 164, 476, 554, 602, 705, 1085
Alw26I GTCTC 1 cut(s) 505
AlwI GGATC 2 cut(s) 206, 761
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 1 cut(s) 1082
ApoI RAATTY 4 cut(s) 269, 330, 403, 900
AseI ATTAAT 1 cut(s) 765
Asp700I GAANNNNTTC 1 cut(s) 633
BbsI GAAGAC 2 cut(s) 224, 351
BbvI GCAGC 1 cut(s) 1094
BccI CCATC 4 cut(s) 54, 80, 374, 856
BclI TGATCA 2 cut(s) 595, 963
BcoDI GTCTC 1 cut(s) 505
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 933
BisI GCNGC 1 cut(s) 1083
BlsI GCNGC 1 cut(s) 1084
BmcAI AGTACT 1 cut(s) 716
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 2 cut(s) 224, 351
BpuEI CTTGAG 1 cut(s) 419
BsaWI WCCGGW 1 cut(s) 814
Bse1I ACTGG 1 cut(s) 917
BseGI GGATG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 917
BseRI GAGGAG 1 cut(s) 833
BseXI GCAGC 1 cut(s) 1094
BshFI GGCC 1 cut(s) 431
BsiSI CCGG 1 cut(s) 815
BsmAI GTCTC 1 cut(s) 505
BsnI GGCC 1 cut(s) 431
Bsp143I GATC 4 cut(s) 211, 595, 753, 963
BspACI CCGC 1 cut(s) 750
BspANI GGCC 1 cut(s) 431
BspHI TCATGA 1 cut(s) 484
BspMAI CTGCAG 1 cut(s) 937
BspPI GGATC 2 cut(s) 206, 761
BspQI GCTCTTC 1 cut(s) 1093
BsrI ACTGG 1 cut(s) 917
BssMI GATC 4 cut(s) 211, 595, 753, 963
Bst4CI ACNGT 6 cut(s) 97, 322, 633, 719, 925, 1010
Bst6I CTCTTC 1 cut(s) 1093
BstDEI CTNAG 2 cut(s) 444, 614
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 4 cut(s) 214, 598, 756, 966
BstMAI GTCTC 1 cut(s) 505
BstMBI GATC 4 cut(s) 211, 595, 753, 963
BstMWI GCNNNNNNNGC 3 cut(s) 830, 1091, 1100
BstNSI RCATGY 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 933
BstV1I GCAGC 1 cut(s) 1094
BstV2I GAAGAC 2 cut(s) 224, 351
BstX2I RGATCY 2 cut(s) 211, 753
BstXI CCANNNNNNTGG 1 cut(s) 885
BstYI RGATCY 2 cut(s) 211, 753
BsuRI GGCC 1 cut(s) 431
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 1 cut(s) 91
CciI TCATGA 1 cut(s) 484
CseI GACGC 1 cut(s) 449
Csp6I GTAC 3 cut(s) 295, 715, 1074
CviAII CATG 7 cut(s) 131, 283, 349, 433, 485, 746, 988
CviJI RGCY 9 cut(s) 103, 164, 233, 431, 476, 554, 602, 705, 1085
CviKI_1 RGCY 9 cut(s) 103, 164, 233, 431, 476, 554, 602, 705, 1085
CviQI GTAC 3 cut(s) 295, 715, 1074
DdeI CTNAG 2 cut(s) 444, 614
DpnI GATC 4 cut(s) 213, 597, 755, 965
DpnII GATC 4 cut(s) 211, 595, 753, 963
DraI TTTAAA 1 cut(s) 855
Eam1104I CTCTTC 1 cut(s) 1093
EarI CTCTTC 1 cut(s) 1093
Eco57I CTGAAG 2 cut(s) 363, 576
EcoRI GAATTC 1 cut(s) 269
EcoT22I ATGCAT 1 cut(s) 354
FaeI CATG 7 cut(s) 134, 286, 352, 436, 488, 749, 991
FalI AAGNNNNNCTT 2 cut(s) 166, 198
FatI CATG 7 cut(s) 130, 282, 348, 432, 484, 745, 987
FauI CCCGC 1 cut(s) 743
FbaI TGATCA 2 cut(s) 595, 963
Fnu4HI GCNGC 1 cut(s) 1083
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 1083
FspBI CTAG 1 cut(s) 531
GluI GCNGC 1 cut(s) 1083
HaeIII GGCC 1 cut(s) 431
HapII CCGG 1 cut(s) 815
HgaI GACGC 1 cut(s) 449
Hin1II CATG 7 cut(s) 134, 286, 352, 436, 488, 749, 991
HincII GTYRAC 2 cut(s) 909, 984
HindII GTYRAC 2 cut(s) 909, 984
HinfI GANTC 5 cut(s) 19, 127, 236, 495, 560
HpaII CCGG 1 cut(s) 815
Hpy166II GTNNAC 2 cut(s) 909, 984
Hpy188I TCNGA 5 cut(s) 216, 504, 569, 694, 760
Hpy188III TCNNGA 4 cut(s) 398, 485, 728, 886
Hpy8I GTNNAC 2 cut(s) 909, 984
HpyCH4III ACNGT 6 cut(s) 97, 322, 633, 719, 925, 1010
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 2 cut(s) 352, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 830, 1091, 1100
HpyF3I CTNAG 2 cut(s) 444, 614
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 7 cut(s) 134, 286, 352, 436, 488, 749, 991
Ksp22I TGATCA 2 cut(s) 595, 963
Kzo9I GATC 4 cut(s) 211, 595, 753, 963
LguI GCTCTTC 1 cut(s) 1093
LpnPI CCDG 3 cut(s) 828, 871, 930
Lsp1109I GCAGC 1 cut(s) 1094
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 531
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 4 cut(s) 108, 541, 919, 990
MalI GATC 4 cut(s) 213, 597, 755, 965
MboI GATC 4 cut(s) 211, 595, 753, 963
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 2 cut(s) 211, 753
MlyI GAGTC 3 cut(s) 136, 245, 504
MnlI CCTC 3 cut(s) 421, 811, 814
Mph1103I ATGCAT 1 cut(s) 354
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 7 cut(s) 99, 144, 185, 573, 765, 854, 1004
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 1 cut(s) 815
MunI CAATTG 1 cut(s) 834
MwoI GCNNNNNNNGC 3 cut(s) 830, 1091, 1100
NdeII GATC 4 cut(s) 211, 595, 753, 963
NlaIII CATG 7 cut(s) 134, 286, 352, 436, 488, 749, 991
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 4 cut(s) 108, 541, 919, 990
NsiI ATGCAT 1 cut(s) 354
NspI RCATGY 1 cut(s) 352
PagI TCATGA 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 1093
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 2 cut(s) 19, 560
PkrI GCNGC 1 cut(s) 1084
PleI GAGTC 3 cut(s) 135, 244, 503
PpsI GAGTC 3 cut(s) 135, 244, 503
PshBI ATTAAT 1 cut(s) 765
PstI CTGCAG 1 cut(s) 937
PsuI RGATCY 2 cut(s) 211, 753
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 3 cut(s) 296, 716, 1075
RsaNI GTAC 3 cut(s) 295, 715, 1074
SapI GCTCTTC 1 cut(s) 1093
SaqAI TTAA 7 cut(s) 99, 144, 185, 573, 765, 854, 1004
SatI GCNGC 1 cut(s) 1083
Sau3AI GATC 4 cut(s) 211, 595, 753, 963
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 3 cut(s) 136, 245, 504
SetI ASST 8 cut(s) 121, 166, 478, 556, 604, 707, 1087, 1109
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 933
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SsiI CCGC 1 cut(s) 750
SspI AATATT 1 cut(s) 249
SspMI CTAG 1 cut(s) 531
TaaI ACNGT 6 cut(s) 97, 322, 633, 719, 925, 1010
TaiI ACGT 1 cut(s) 121
TaqII GACCGA 1 cut(s) 969
TatI WGTACW 2 cut(s) 714, 1073
TfiI GAWTC 2 cut(s) 19, 560
Tru1I TTAA 7 cut(s) 99, 144, 185, 573, 765, 854, 1004
Tru9I TTAA 7 cut(s) 99, 144, 185, 573, 765, 854, 1004
TseFI GTSAC 4 cut(s) 108, 541, 919, 990
TseI GCWGC 1 cut(s) 1082
Tsp45I GTSAC 4 cut(s) 108, 541, 919, 990
TspDTI ATGAA 6 cut(s) 24, 33, 473, 474, 501, 660
VspI ATTAAT 1 cut(s) 765
XapI RAATTY 4 cut(s) 269, 330, 403, 900
XceI RCATGY 1 cut(s) 352
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 1 cut(s) 531
ZrmI AGTACT 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.