RchiOBHm_Chr1g0379061

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000215
Physical Location & Seq
Forward (+)
65243166 .. 65243871
706 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60241

Sequence Viewer

Length: 534 bp
ATGGCTATTTCTCAATTGAAGAGTAGATTTGAACAAATGGAAAGTTTTGAATCTGTATTTGGCTTCTTATTTGATGCATCACAGTTGGTTTCATTGGATGACGAAGAAATGAAAAATTGTTGCTTGAAACTTGAACTTGCTTTGAAACATGGTGAGGTGTCTGATATTGATGCAAAATATTTGCTTTCTGAGTTACAAGTATTGCAGGAAATGCTACCAAATGAAGCATATGAAACAGGAAACCCATGGAATTCCATTAAAATTATGGAGTTTGCAAAAAAAATGGATATGTTTCCAAATATTTTAGTTGCTTATAGGATTTTATTGACTATACCTGTTACAGTGGCATCTGCAGAAAGAAGTTTTTCAAAATTAAAGTTATTAAAATCTTATTTGCGGACAACAATGACTCAAGATAGGTTGAATGGTTTAGCAATCTTGAGTATTGAAAAGAATATGTTGAAAAATATTGAGCTTGAGCACATAATTGATGATTTTGCTTCTAAAAGTGCAAGAAGAAATCATTTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

177

Amino Acids

20.42

Weight (kDa)

5.69

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 85 - 153 3.8e-14 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 397
AcsI RAATTY 1 cut(s) 250
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AluBI AGCT 1 cut(s) 475
AluI AGCT 1 cut(s) 475
Alw21I GWGCWC 1 cut(s) 483
ApoI RAATTY 1 cut(s) 250
Asp700I GAANNNNTTC 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 483
BfmI CTRYAG 1 cut(s) 351
BmsI GCATC 4 cut(s) 64, 86, 160, 356
BpuEI CTTGAG 3 cut(s) 396, 460, 497
BsaJI CCNNGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 483
Bsp1286I GDGCHC 1 cut(s) 483
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 1 cut(s) 397
BspCNI CTCAG 1 cut(s) 181
BspMAI CTGCAG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 84, 343
Bst6I CTCTTC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 348
CviAII CATG 2 cut(s) 149, 246
CviJI RGCY 3 cut(s) 5, 63, 475
CviKI_1 RGCY 3 cut(s) 5, 63, 475
DdeI CTNAG 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 245
EcoRI GAATTC 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 245
EcoT22I ATGCAT 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 2 cut(s) 152, 249
FatI CATG 2 cut(s) 148, 245
FauNDI CATATG 1 cut(s) 229
FokI GGATG 1 cut(s) 110
Hin1II CATG 2 cut(s) 152, 249
HinfI GANTC 2 cut(s) 50, 409
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 163, 190
Hpy188III TCNNGA 2 cut(s) 413, 439
HpyCH4III ACNGT 2 cut(s) 84, 343
HpyCH4V TGCA 6 cut(s) 77, 173, 205, 275, 353, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 2 cut(s) 152, 249
LpnPI CCDG 3 cut(s) 191, 222, 348
LweI GCATC 4 cut(s) 64, 86, 160, 356
MaeIII GTNAC 2 cut(s) 192, 337
MboII GAAGA 3 cut(s) 31, 116, 528
MfeI CAATTG 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 6 cut(s) 14, 115, 250, 261, 371, 486
MlyI GAGTC 1 cut(s) 403
MnlI CCTC 1 cut(s) 148
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 364
MseI TTAA 3 cut(s) 258, 374, 383
MunI CAATTG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 211
NcoI CCATGG 1 cut(s) 245
NdeI CATATG 1 cut(s) 229
NlaIII CATG 2 cut(s) 152, 249
NsiI ATGCAT 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 364
PfeI GAWTC 1 cut(s) 50
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PstI CTGCAG 1 cut(s) 355
SaqAI TTAA 3 cut(s) 258, 374, 383
SchI GAGTC 1 cut(s) 403
SduI GDGCHC 1 cut(s) 483
SetI ASST 4 cut(s) 159, 337, 422, 477
SfaNI GCATC 4 cut(s) 64, 86, 160, 356
SfcI CTRYAG 1 cut(s) 351
SmlI CTYRAG 3 cut(s) 411, 439, 476
SmoI CTYRAG 3 cut(s) 411, 439, 476
Sse9I AATT 6 cut(s) 14, 115, 250, 261, 371, 486
SsiI CCGC 1 cut(s) 397
SspI AATATT 3 cut(s) 179, 301, 469
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 84, 343
TasI AATT 6 cut(s) 14, 115, 250, 261, 371, 486
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 3 cut(s) 258, 374, 383
Tru9I TTAA 3 cut(s) 258, 374, 383
TscAI CASTG 1 cut(s) 348
TspDTI ATGAA 4 cut(s) 81, 125, 237, 246
TspRI CASTG 1 cut(s) 348
XapI RAATTY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 364
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.