RchiOBHm_Chr2g0139641

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000215
Physical Location & Seq
Forward (+)
57168969 .. 57169812
844 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51017

Sequence Viewer

Length: 372 bp
ATGCCTCCTAAAAGAAAATGTTTAACTGGACATGCAAAACGCTTAAAGAAAAAAAAAGATGCACAGTTGGTTAATTCTTTAAGGGGAAGTCTTGATAGGTTCATTAGTAGAGAATCAGAAGGTTTGGGTGGGCGTTTAGTTAATGAAGTGGCAGAAGAGCACACTGATAGGGAAGATAATGTGGAAGAGCACACTGATGGCAATGTAGTTGTCGATAATTTGGGTCATGATGAAAATGAGAATGGTACAGGACATAATGATAATGTGAATGATGCTCCTGTGAATATTTTTGACCCAAGAAATTGGGATAGTTTGGATAAAAAGTTGATAGATTTGTTGGTAGAAAAGGTCCTCATAGAGATCTTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

123

Amino Acids

13.92

Weight (kDa)

5.19

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 247
AgsI TTSAA 1 cut(s) 368
Alw21I GWGCWC 2 cut(s) 162, 192
AspS9I GGNCC 1 cut(s) 349
AvaII GGWCC 1 cut(s) 349
Bbv12I GWGCWC 2 cut(s) 162, 192
BccI CCATC 1 cut(s) 191
BglII AGATCT 1 cut(s) 360
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
BmsI GCATC 2 cut(s) 49, 262
Bse1I ACTGG 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 31
BsiHKAI GWGCWC 2 cut(s) 162, 192
Bsp1286I GDGCHC 2 cut(s) 162, 192
Bsp143I GATC 1 cut(s) 360
BspHI TCATGA 1 cut(s) 226
BspQI GCTCTTC 2 cut(s) 150, 180
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 31
BssMI GATC 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 2 cut(s) 150, 180
BstKTI GATC 1 cut(s) 363
BstMBI GATC 1 cut(s) 360
BstNSI RCATGY 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 360
BstXI CCANNNNNNTGG 1 cut(s) 303
BstYI RGATCY 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 162, 192
CciI TCATGA 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 32, 227
CviQI GTAC 1 cut(s) 246
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
Eam1104I CTCTTC 2 cut(s) 150, 180
EarI CTCTTC 2 cut(s) 150, 180
Eco47I GGWCC 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 349
FaeI CATG 2 cut(s) 35, 230
FaiI YATR 4 cut(s) 33, 228, 255, 356
FatI CATG 2 cut(s) 31, 226
Hin1II CATG 2 cut(s) 35, 230
HinfI GANTC 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 92, 227
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 35, 62
Hsp92II CATG 2 cut(s) 35, 230
Kzo9I GATC 1 cut(s) 360
LguI GCTCTTC 2 cut(s) 150, 180
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 3 cut(s) 12, 234, 291
LweI GCATC 2 cut(s) 49, 262
MalI GATC 1 cut(s) 362
MboI GATC 1 cut(s) 360
MboII GAAGA 3 cut(s) 167, 185, 197
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 2 cut(s) 162, 192
MluCI AATT 3 cut(s) 73, 217, 301
MnlI CCTC 2 cut(s) 15, 362
MseI TTAA 5 cut(s) 23, 44, 72, 80, 141
MslI CAYNNNNRTG 1 cut(s) 195
NdeII GATC 1 cut(s) 360
NlaIII CATG 2 cut(s) 35, 230
NspI RCATGY 1 cut(s) 35
PagI TCATGA 1 cut(s) 226
PciSI GCTCTTC 2 cut(s) 150, 180
PfeI GAWTC 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 349
Psp5II RGGWCCY 1 cut(s) 349
PspPI GGNCC 1 cut(s) 349
PspPPI RGGWCCY 1 cut(s) 349
PsuI RGATCY 1 cut(s) 360
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 195
SapI GCTCTTC 2 cut(s) 150, 180
SaqAI TTAA 5 cut(s) 23, 44, 72, 80, 141
Sau3AI GATC 1 cut(s) 360
Sau96I GGNCC 1 cut(s) 349
SduI GDGCHC 2 cut(s) 162, 192
SetI ASST 3 cut(s) 101, 124, 351
SfaNI GCATC 2 cut(s) 49, 262
SgeI CNNG 7 cut(s) 39, 44, 104, 239, 261, 290, 309
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 3 cut(s) 73, 217, 301
SspI AATATT 1 cut(s) 286
TaaI ACNGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 213
TasI AATT 3 cut(s) 73, 217, 301
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 5 cut(s) 23, 44, 72, 80, 141
Tru9I TTAA 5 cut(s) 23, 44, 72, 80, 141
TscAI CASTG 2 cut(s) 169, 199
TspDTI ATGAA 3 cut(s) 91, 159, 246
TspRI CASTG 2 cut(s) 169, 199
VpaK11BI GGWCC 1 cut(s) 349
XceI RCATGY 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.