FvH4_2g18762

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000215
Physical Location & Seq
Forward (+)
16010614 .. 16014133
3520 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18762.t1

Sequence Viewer

Length: 1413 bp
ATGCCTCTTATACGAAAACAAAAGTCTGGACATAAGAAAAGAAAAAAGAAGCAGAAGGAAGAAGCATTGAGTCAAAGTCAATCAGAGAGCATCAATAAGTACTTTAGTAGCAAGCAAAGGGCAGAGAGGGTAGACACTATAGAAGTTAGAGAACAACATGTGACTGTCAATGAAGATCCACAACAGCCTGCCAATAAAGATCCACACCAACCTGTCAATGAAAATCCACAACAGCCTGCCAATGAAGAACCACACCAACCTGTTAATGAAGATCCACACCCGCCTACCAATGAAGATCCACTACAGCCTAAGAATGAGGAAATTGAGGAAGGTGAAAATATAAATCAAGATAATCATGAAGAGATTGTTAATGTGCCTGCATATGTTGATAAAGCTGGAAGACATTTCGAGTCAAAGCATTATAAGCGGCTGCTGCCTAATGCCAATAAAGAGCAAGCTTCTCAAATAAAAGATGCGCTTGATGAATTGGCAACAACAAGTGAAGATCCGAAAACCAAAAGTGAAGATGAAGGCTTGGCAGAATTTGAACTTGCCAATTTTGAGTTTTTGCTTGGAATGGTGATTTGGTACAAGCTGCTACATCATATAAATATTGTTAATAAGTTTCTTCAAGCTAAGAATATGGATATTGATGTTGCTATAAGCCAGTTGAAAGCGCTTATTTCTTTTCTTCAAGAGTATAGAGAATCTGGGTTTGATCAAGCCATAATTGAAGCTGAACACATTGCAAATGAAATGGGAATTGAAGCTGTTTTTCAAGAAGAACACATCATTCGAAGGAAGAGGCAATCTGATGAGATCAACAGTGGTGAAGAGGTGACCCAATCTTCTAAAGAATCTTTTCGGGTTAACTACTTTATATTTATAGTTGATCAAGCTCTTTCTTCACTTCAATCTCAGTTTGAGCAATTCCAAATATATGAGGAAATCTTTGGCTTTTTGTTTGCTGTGGAGAAGTTAAAGTCTGTTGATGATAATAGTCCCTTGAGCTCATGTGTCAAACTTCAACAATTTCTAACACATAATGAGCACTCTGATATTGATGCAACCGATTTGTGTTTAGAATTGCAGTTGTTAAGACACTTACTACCAGCAGAAACAACTAGAGCAATAGATGTGTTGAACTTTTTGAGGAAGATGGATGGATGTTATCCTAATGCATATGTTGCTTACCGAATTTTGTTGACTATACCAGTTACAGTAGCTTCTGCTAAAAAGAGTTTTTCTAAGTTGAAGTTGATAAAAACTTATCTCCGGTCAACTATGTCACAAGAGAGACTAAATGGCTTGGCTATGTTATCCATTGAGAAAAAGGTGGTTGAGAAAGTTGATTATGCAAAGTTAATTGATACTTTCGCCTCCAAGATTACGAGACGAGTAGTATTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

471

Amino Acids

54.15

Weight (kDa)

5.57

Isoelectric Point (pI)

65.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 368 - 444 7.5e-17 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AccI GTMKAC 1 cut(s) 132
AciI CCGC 2 cut(s) 281, 427
AclWI GGATC 5 cut(s) 170, 194, 266, 290, 500
AcsI RAATTY 2 cut(s) 542, 1197
AfaI GTAC 2 cut(s) 101, 590
AfeI AGCGCT 1 cut(s) 678
AflIII ACRYGT 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 568, 600
AluBI AGCT 9 cut(s) 395, 458, 595, 635, 737, 770, 899, 1011, 1226
AluI AGCT 9 cut(s) 395, 458, 595, 635, 737, 770, 899, 1011, 1226
Alw21I GWGCWC 2 cut(s) 1013, 1053
Alw26I GTCTC 2 cut(s) 1291, 1387
AlwI GGATC 5 cut(s) 170, 194, 266, 290, 500
Aor51HI AGCGCT 1 cut(s) 678
ApeKI GCWGC 3 cut(s) 430, 433, 595
ApoI RAATTY 2 cut(s) 542, 1197
Asp700I GAANNNNTTC 1 cut(s) 861
AspLEI GCGC 2 cut(s) 478, 679
AsuHPI GGTGA 4 cut(s) 344, 592, 842, 850
AsuII TTCGAA 1 cut(s) 796
BanII GRGCYC 1 cut(s) 1013
BarI GAAGNNNNNNTAC 2 cut(s) 285, 317
BbsI GAAGAC 1 cut(s) 406
Bbv12I GWGCWC 2 cut(s) 1013, 1053
BbvI GCAGC 3 cut(s) 417, 420, 582
BccI CCATC 2 cut(s) 1153, 1157
BclI TGATCA 2 cut(s) 718, 892
BcoDI GTCTC 2 cut(s) 1291, 1387
BfaI CTAG 1 cut(s) 1125
BfmI CTRYAG 2 cut(s) 138, 302
BfoI RGCGCY 1 cut(s) 680
BisI GCNGC 4 cut(s) 428, 431, 434, 596
BlsI GCNGC 4 cut(s) 429, 432, 435, 597
BmcAI AGTACT 1 cut(s) 101
BmsI GCATC 3 cut(s) 99, 463, 1054
BpiI GAAGAC 1 cut(s) 406
Bpu14I TTCGAA 1 cut(s) 796
BpuEI CTTGAG 1 cut(s) 1027
BsaWI WCCGGW 1 cut(s) 1275
Bse1I ACTGG 2 cut(s) 667, 1214
Bse3DI GCAATG 1 cut(s) 744
BseGI GGATG 2 cut(s) 1168, 1172
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 1 cut(s) 932
BseNI ACTGG 2 cut(s) 667, 1214
BseXI GCAGC 3 cut(s) 417, 420, 582
BsiHKAI GWGCWC 2 cut(s) 1013, 1053
BsiSI CCGG 1 cut(s) 1276
BslFI GGGAC 1 cut(s) 987
BsmAI GTCTC 2 cut(s) 1291, 1387
BsmBI CGTCTC 1 cut(s) 1387
BsmFI GGGAC 1 cut(s) 987
Bsp119I TTCGAA 1 cut(s) 796
Bsp1286I GDGCHC 2 cut(s) 1013, 1053
Bsp143I GATC 8 cut(s) 175, 199, 271, 295, 505, 718, 819, 892
BspACI CCGC 2 cut(s) 281, 427
BspCNI CTCAG 1 cut(s) 931
BspHI TCATGA 1 cut(s) 355
BspPI GGATC 5 cut(s) 170, 194, 266, 290, 500
BspT104I TTCGAA 1 cut(s) 796
BsrDI GCAATG 1 cut(s) 744
BsrI ACTGG 2 cut(s) 667, 1214
BssMI GATC 8 cut(s) 175, 199, 271, 295, 505, 718, 819, 892
Bst4CI ACNGT 3 cut(s) 166, 827, 1222
Bst6I CTCTTC 3 cut(s) 354, 797, 828
BstAPI GCANNNNNTGC 1 cut(s) 1187
BstBI TTCGAA 1 cut(s) 796
BstC8I GCNNGC 5 cut(s) 113, 189, 237, 378, 456
BstDEI CTNAG 4 cut(s) 309, 636, 918, 1248
BstEII GGTNACC 1 cut(s) 838
BstF5I GGATG 2 cut(s) 1168, 1172
BstH2I RGCGCY 1 cut(s) 680
BstHHI GCGC 2 cut(s) 478, 679
BstKTI GATC 8 cut(s) 178, 202, 274, 298, 508, 721, 822, 895
BstMAI GTCTC 2 cut(s) 1291, 1387
BstMBI GATC 8 cut(s) 175, 199, 271, 295, 505, 718, 819, 892
BstMWI GCNNNNNNNGC 3 cut(s) 424, 433, 1187
BstNSI RCATGY 1 cut(s) 161
BstPI GGTNACC 1 cut(s) 838
BstSFI CTRYAG 2 cut(s) 138, 302
BstV1I GCAGC 3 cut(s) 417, 420, 582
BstV2I GAAGAC 1 cut(s) 406
BstX2I RGATCY 5 cut(s) 175, 199, 271, 295, 505
BstYI RGATCY 5 cut(s) 175, 199, 271, 295, 505
BtsCI GGATG 2 cut(s) 1168, 1172
BtsIMutI CAGTG 1 cut(s) 832
Cac8I GCNNGC 5 cut(s) 113, 189, 237, 378, 456
CciI TCATGA 1 cut(s) 355
CfoI GCGC 2 cut(s) 478, 679
Csp6I GTAC 2 cut(s) 100, 589
CviAII CATG 3 cut(s) 158, 356, 1014
CviQI GTAC 2 cut(s) 100, 589
DdeI CTNAG 4 cut(s) 309, 636, 918, 1248
DpnI GATC 8 cut(s) 177, 201, 273, 297, 507, 720, 821, 894
DpnII GATC 8 cut(s) 175, 199, 271, 295, 505, 718, 819, 892
Eam1104I CTCTTC 3 cut(s) 354, 797, 828
EarI CTCTTC 3 cut(s) 354, 797, 828
Ecl136II GAGCTC 1 cut(s) 1011
Eco24I GRGCYC 1 cut(s) 1013
Eco47III AGCGCT 1 cut(s) 678
Eco53kI GAGCTC 1 cut(s) 1011
Eco91I GGTNACC 1 cut(s) 838
EcoICRI GAGCTC 1 cut(s) 1011
EcoO65I GGTNACC 1 cut(s) 838
EcoT22I ATGCAT 1 cut(s) 1183
EcoT38I GRGCYC 1 cut(s) 1013
Esp3I CGTCTC 1 cut(s) 1387
FaeI CATG 3 cut(s) 161, 359, 1017
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FaqI GGGAC 1 cut(s) 987
FatI CATG 3 cut(s) 157, 355, 1013
FauI CCCGC 1 cut(s) 288
FauNDI CATATG 2 cut(s) 382, 1183
FbaI TGATCA 2 cut(s) 718, 892
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 4 cut(s) 428, 431, 434, 596
FokI GGATG 2 cut(s) 1175, 1179
FriOI GRGCYC 1 cut(s) 1013
Fsp4HI GCNGC 4 cut(s) 428, 431, 434, 596
FspBI CTAG 1 cut(s) 1125
GlaI GCGC 2 cut(s) 477, 678
GluI GCNGC 4 cut(s) 428, 431, 434, 596
HaeII RGCGCY 1 cut(s) 680
HapII CCGG 1 cut(s) 1276
HhaI GCGC 2 cut(s) 478, 679
Hin1II CATG 3 cut(s) 161, 359, 1017
Hin6I GCGC 2 cut(s) 476, 677
HinP1I GCGC 2 cut(s) 476, 677
HincII GTYRAC 3 cut(s) 871, 1206, 1281
HindII GTYRAC 3 cut(s) 871, 1206, 1281
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 4 cut(s) 70, 410, 707, 857
HpaI GTTAAC 1 cut(s) 871
HpaII CCGG 1 cut(s) 1276
HphI GGTGA 4 cut(s) 344, 592, 842, 850
Hpy166II GTNNAC 4 cut(s) 133, 871, 1206, 1281
Hpy188I TCNGA 4 cut(s) 85, 510, 814, 1057
Hpy188III TCNNGA 5 cut(s) 27, 347, 356, 695, 779
Hpy8I GTNNAC 4 cut(s) 133, 871, 1206, 1281
HpyAV CCTTC 4 cut(s) 49, 323, 524, 792
HpyCH4III ACNGT 3 cut(s) 166, 827, 1222
HpyCH4V TGCA 6 cut(s) 380, 749, 1067, 1090, 1181, 1358
HpyF10VI GCNNNNNNNGC 3 cut(s) 424, 433, 1187
HpyF3I CTNAG 4 cut(s) 309, 636, 918, 1248
Hsp92II CATG 3 cut(s) 161, 359, 1017
HspAI GCGC 2 cut(s) 476, 677
Ksp22I TGATCA 2 cut(s) 718, 892
KspAI GTTAAC 1 cut(s) 871
Kzo9I GATC 8 cut(s) 175, 199, 271, 295, 505, 718, 819, 892
Lsp1109I GCAGC 3 cut(s) 417, 420, 582
LweI GCATC 3 cut(s) 99, 463, 1054
MaeI CTAG 1 cut(s) 1125
MaeIII GTNAC 4 cut(s) 160, 838, 1216, 1287
MalI GATC 8 cut(s) 177, 201, 273, 297, 507, 720, 821, 894
MboI GATC 8 cut(s) 175, 199, 271, 295, 505, 718, 819, 892
MflI RGATCY 5 cut(s) 175, 199, 271, 295, 505
MhlI GDGCHC 2 cut(s) 1013, 1053
MlyI GAGTC 2 cut(s) 79, 419
MnlI CCTC 9 cut(s) 15, 120, 310, 319, 798, 829, 937, 1146, 1390
Mph1103I ATGCAT 1 cut(s) 1183
MroXI GAANNNNTTC 1 cut(s) 861
MseI TTAA 8 cut(s) 264, 369, 618, 870, 980, 1097, 1364, 1407
MspI CCGG 1 cut(s) 1276
MwoI GCNNNNNNNGC 3 cut(s) 424, 433, 1187
NdeI CATATG 2 cut(s) 382, 1183
NdeII GATC 8 cut(s) 175, 199, 271, 295, 505, 718, 819, 892
NlaIII CATG 3 cut(s) 161, 359, 1017
NmuCI GTSAC 3 cut(s) 160, 838, 1287
NsiI ATGCAT 1 cut(s) 1183
NspI RCATGY 1 cut(s) 161
NspV TTCGAA 1 cut(s) 796
PagI TCATGA 1 cut(s) 355
PciI ACATGT 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 861
PfeI GAWTC 2 cut(s) 707, 857
PkrI GCNGC 4 cut(s) 429, 432, 435, 597
PleI GAGTC 2 cut(s) 78, 418
PpsI GAGTC 2 cut(s) 78, 418
PscI ACATGT 1 cut(s) 157
PsiI TTATAA 1 cut(s) 423
Psp124BI GAGCTC 1 cut(s) 1013
PspEI GGTNACC 1 cut(s) 838
PsuI RGATCY 5 cut(s) 175, 199, 271, 295, 505
RsaI GTAC 2 cut(s) 101, 590
RsaNI GTAC 2 cut(s) 100, 589
SacI GAGCTC 1 cut(s) 1013
SaqAI TTAA 8 cut(s) 264, 369, 618, 870, 980, 1097, 1364, 1407
SatI GCNGC 4 cut(s) 428, 431, 434, 596
Sau3AI GATC 8 cut(s) 175, 199, 271, 295, 505, 718, 819, 892
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 2 cut(s) 79, 419
SduI GDGCHC 2 cut(s) 1013, 1053
SfaNI GCATC 3 cut(s) 99, 463, 1054
SfcI CTRYAG 2 cut(s) 138, 302
SfuI TTCGAA 1 cut(s) 796
SmlI CTYRAG 1 cut(s) 1006
SmoI CTYRAG 1 cut(s) 1006
SsiI CCGC 2 cut(s) 281, 427
SspI AATATT 1 cut(s) 613
SspMI CTAG 1 cut(s) 1125
SstI GAGCTC 1 cut(s) 1013
TaaI ACNGT 3 cut(s) 166, 827, 1222
TaqI TCGA 2 cut(s) 408, 796
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 430
TfiI GAWTC 2 cut(s) 707, 857
Tru1I TTAA 8 cut(s) 264, 369, 618, 870, 980, 1097, 1364, 1407
Tru9I TTAA 8 cut(s) 264, 369, 618, 870, 980, 1097, 1364, 1407
TscAI CASTG 1 cut(s) 832
TseFI GTSAC 3 cut(s) 160, 838, 1287
TseI GCWGC 3 cut(s) 430, 433, 595
Tsp45I GTSAC 3 cut(s) 160, 838, 1287
TspDTI ATGAA 9 cut(s) 186, 234, 258, 282, 306, 372, 498, 543, 768
TspRI CASTG 1 cut(s) 832
XapI RAATTY 2 cut(s) 542, 1197
XceI RCATGY 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 861
XspI CTAG 1 cut(s) 1125
ZrmI AGTACT 1 cut(s) 101
Zsp2I ATGCAT 1 cut(s) 1183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.