DNA-binding transcription factor activity, RNA polymerase II-specific
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 147 |
| AciI | CCGC | 1 cut(s) | 118 |
| AclI | AACGTT | 1 cut(s) | 895 |
| AclWI | GGATC | 2 cut(s) | 244, 450 |
| AcsI | RAATTY | 3 cut(s) | 23, 158, 911 |
| AcuI | CTGAAG | 2 cut(s) | 603, 990 |
| AcyI | GRCGYC | 2 cut(s) | 836, 953 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 137, 154 |
| AflII | CTTAAG | 1 cut(s) | 806 |
| AgsI | TTSAA | 5 cut(s) | 59, 287, 469, 493, 554 |
| AjnI | CCWGG | 2 cut(s) | 136, 505 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 734, 766, 835, 867 |
| AluBI | AGCT | 3 cut(s) | 182, 233, 764 |
| AluI | AGCT | 3 cut(s) | 182, 233, 764 |
| Alw21I | GWGCWC | 1 cut(s) | 184 |
| Alw26I | GTCTC | 3 cut(s) | 534, 564, 693 |
| AlwI | GGATC | 2 cut(s) | 244, 450 |
| Aor13HI | TCCGGA | 1 cut(s) | 147 |
| AoxI | GGCC | 3 cut(s) | 51, 103, 142 |
| ApeKI | GCWGC | 1 cut(s) | 114 |
| ApoI | RAATTY | 3 cut(s) | 23, 158, 911 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1001, 1033 |
| AseI | ATTAAT | 1 cut(s) | 747 |
| AspS9I | GGNCC | 5 cut(s) | 52, 99, 104, 142, 560 |
| AsuHPI | GGTGA | 3 cut(s) | 307, 377, 961 |
| AsuII | TTCGAA | 1 cut(s) | 21 |
| AvaII | GGWCC | 2 cut(s) | 99, 560 |
| AxyI | CCTNAGG | 1 cut(s) | 108 |
| BanII | GRGCYC | 1 cut(s) | 184 |
| Bbv12I | GWGCWC | 1 cut(s) | 184 |
| BbvI | GCAGC | 1 cut(s) | 101 |
| BceAI | ACGGC | 8 cut(s) | 811, 873, 886, 904, 916, 966, 1000, 1020 |
| BciT130I | CCWGG | 2 cut(s) | 138, 507 |
| BciVI | GTATCC | 1 cut(s) | 767 |
| BclI | TGATCA | 1 cut(s) | 301 |
| BcoDI | GTCTC | 3 cut(s) | 534, 564, 693 |
| BfaI | CTAG | 5 cut(s) | 15, 96, 230, 674, 692 |
| BfrI | CTTAAG | 1 cut(s) | 806 |
| BfuI | GTATCC | 1 cut(s) | 767 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 111 |
| BisI | GCNGC | 2 cut(s) | 115, 118 |
| BlsI | GCNGC | 2 cut(s) | 116, 119 |
| Bme1390I | CCNGG | 2 cut(s) | 138, 507 |
| Bme18I | GGWCC | 2 cut(s) | 99, 560 |
| BmgT120I | GGNCC | 5 cut(s) | 52, 99, 104, 142, 560 |
| BmiI | GGNNCC | 2 cut(s) | 135, 143 |
| BmrFI | CCNGG | 2 cut(s) | 138, 507 |
| BmsI | GCATC | 2 cut(s) | 28, 439 |
| BpmI | CTGGAG | 1 cut(s) | 198 |
| Bpu14I | TTCGAA | 1 cut(s) | 21 |
| BpuEI | CTTGAG | 1 cut(s) | 107 |
| BsaHI | GRCGYC | 2 cut(s) | 836, 953 |
| BsaI | GGTCTC | 1 cut(s) | 564 |
| BsaJI | CCNNGG | 4 cut(s) | 137, 505, 793, 855 |
| BsaWI | WCCGGW | 1 cut(s) | 147 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 137, 154 |
| Bse118I | RCCGGY | 2 cut(s) | 101, 130 |
| Bse21I | CCTNAGG | 1 cut(s) | 108 |
| BseAI | TCCGGA | 1 cut(s) | 147 |
| BseBI | CCWGG | 2 cut(s) | 138, 507 |
| BseDI | CCNNGG | 4 cut(s) | 137, 505, 793, 855 |
| BseGI | GGATG | 2 cut(s) | 424, 739 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 137, 154 |
| BseMII | CTCAG | 5 cut(s) | 36, 68, 99, 197, 387 |
| BseXI | GCAGC | 1 cut(s) | 101 |
| BshFI | GGCC | 3 cut(s) | 53, 105, 144 |
| BsiHKAI | GWGCWC | 1 cut(s) | 184 |
| BsiSI | CCGG | 4 cut(s) | 5, 102, 131, 148 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 137, 154 |
| BsmAI | GTCTC | 3 cut(s) | 534, 564, 693 |
| BsmI | GAATGC | 1 cut(s) | 352 |
| BsnI | GGCC | 3 cut(s) | 53, 105, 144 |
| Bso31I | GGTCTC | 1 cut(s) | 564 |
| Bsp119I | TTCGAA | 1 cut(s) | 21 |
| Bsp1286I | GDGCHC | 1 cut(s) | 184 |
| Bsp13I | TCCGGA | 1 cut(s) | 147 |
| Bsp143I | GATC | 5 cut(s) | 236, 301, 406, 442, 661 |
| BspACI | CCGC | 1 cut(s) | 118 |
| BspANI | GGCC | 3 cut(s) | 53, 105, 144 |
| BspCNI | CTCAG | 5 cut(s) | 37, 69, 100, 196, 388 |
| BspEI | TCCGGA | 1 cut(s) | 147 |
| BspHI | TCATGA | 2 cut(s) | 352, 814 |
| BspLI | GGNNCC | 2 cut(s) | 135, 143 |
| BspPI | GGATC | 2 cut(s) | 244, 450 |
| BspT104I | TTCGAA | 1 cut(s) | 21 |
| BspTI | CTTAAG | 1 cut(s) | 806 |
| BspTNI | GGTCTC | 1 cut(s) | 564 |
| BsrFI | RCCGGY | 2 cut(s) | 101, 130 |
| BssAI | RCCGGY | 2 cut(s) | 101, 130 |
| BssECI | CCNNGG | 4 cut(s) | 137, 505, 793, 855 |
| BssMI | GATC | 5 cut(s) | 236, 301, 406, 442, 661 |
| BssNI | GRCGYC | 2 cut(s) | 836, 953 |
| BssT1I | CCWWGG | 1 cut(s) | 793 |
| Bst2UI | CCWGG | 2 cut(s) | 138, 507 |
| Bst6I | CTCTTC | 1 cut(s) | 182 |
| BstACI | GRCGYC | 2 cut(s) | 836, 953 |
| BstAFI | CTTAAG | 1 cut(s) | 806 |
| BstBI | TTCGAA | 1 cut(s) | 21 |
| BstDEI | CTNAG | 5 cut(s) | 45, 77, 108, 183, 396 |
| BstDSI | CCRYGG | 1 cut(s) | 855 |
| BstF5I | GGATG | 2 cut(s) | 424, 739 |
| BstKTI | GATC | 5 cut(s) | 239, 304, 409, 445, 664 |
| BstMAI | GTCTC | 3 cut(s) | 534, 564, 693 |
| BstMBI | GATC | 5 cut(s) | 236, 301, 406, 442, 661 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 111, 458, 714 |
| BstNI | CCWGG | 2 cut(s) | 138, 507 |
| BstSCI | CCNGG | 2 cut(s) | 136, 505 |
| BstV1I | GCAGC | 1 cut(s) | 101 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 513 |
| Bsu36I | CCTNAGG | 1 cut(s) | 108 |
| BsuI | GTATCC | 1 cut(s) | 767 |
| BsuRI | GGCC | 3 cut(s) | 53, 105, 144 |
| BtgI | CCRYGG | 1 cut(s) | 855 |
| BtsCI | GGATG | 2 cut(s) | 424, 739 |
| BtsIMutI | CAGTG | 1 cut(s) | 393 |
| CciI | TCATGA | 2 cut(s) | 352, 814 |
| Cfr10I | RCCGGY | 2 cut(s) | 101, 130 |
| Cfr13I | GGNCC | 5 cut(s) | 52, 99, 104, 142, 560 |
| CseI | GACGC | 2 cut(s) | 825, 961 |
| CviAII | CATG | 7 cut(s) | 332, 343, 353, 362, 415, 575, 815 |
| DdeI | CTNAG | 5 cut(s) | 45, 77, 108, 183, 396 |
| DpnI | GATC | 5 cut(s) | 238, 303, 408, 444, 663 |
| DpnII | GATC | 5 cut(s) | 236, 301, 406, 442, 661 |
| Eam1104I | CTCTTC | 1 cut(s) | 182 |
| EarI | CTCTTC | 1 cut(s) | 182 |
| Ecl136II | GAGCTC | 1 cut(s) | 182 |
| Eco130I | CCWWGG | 1 cut(s) | 793 |
| Eco24I | GRGCYC | 1 cut(s) | 184 |
| Eco31I | GGTCTC | 1 cut(s) | 564 |
| Eco47I | GGWCC | 2 cut(s) | 99, 560 |
| Eco53kI | GAGCTC | 1 cut(s) | 182 |
| Eco57I | CTGAAG | 2 cut(s) | 603, 990 |
| Eco81I | CCTNAGG | 1 cut(s) | 108 |
| EcoICRI | GAGCTC | 1 cut(s) | 182 |
| EcoO109I | RGGNCCY | 3 cut(s) | 52, 142, 560 |
| EcoRII | CCWGG | 2 cut(s) | 136, 505 |
| EcoT14I | CCWWGG | 1 cut(s) | 793 |
| EcoT22I | ATGCAT | 1 cut(s) | 463 |
| EcoT38I | GRGCYC | 1 cut(s) | 184 |
| ErhI | CCWWGG | 1 cut(s) | 793 |
| FaeI | CATG | 7 cut(s) | 335, 346, 356, 365, 418, 578, 818 |
| FatI | CATG | 7 cut(s) | 331, 342, 352, 361, 414, 574, 814 |
| FauNDI | CATATG | 1 cut(s) | 384 |
| FbaI | TGATCA | 1 cut(s) | 301 |
| Fnu4HI | GCNGC | 2 cut(s) | 115, 118 |
| FokI | GGATG | 2 cut(s) | 431, 746 |
| FriOI | GRGCYC | 1 cut(s) | 184 |
| Fsp4HI | GCNGC | 2 cut(s) | 115, 118 |
| FspBI | CTAG | 5 cut(s) | 15, 96, 230, 674, 692 |
| GluI | GCNGC | 2 cut(s) | 115, 118 |
| GsuI | CTGGAG | 1 cut(s) | 198 |
| HaeIII | GGCC | 3 cut(s) | 53, 105, 144 |
| HapII | CCGG | 4 cut(s) | 5, 102, 131, 148 |
| HgaI | GACGC | 2 cut(s) | 825, 961 |
| Hin1I | GRCGYC | 2 cut(s) | 836, 953 |
| Hin1II | CATG | 7 cut(s) | 335, 346, 356, 365, 418, 578, 818 |
| HinfI | GANTC | 2 cut(s) | 358, 686 |
| HpaII | CCGG | 4 cut(s) | 5, 102, 131, 148 |
| HphI | GGTGA | 3 cut(s) | 307, 377, 961 |
| Hpy188I | TCNGA | 7 cut(s) | 66, 78, 186, 539, 622, 666, 685 |
| Hpy188III | TCNNGA | 7 cut(s) | 148, 177, 305, 353, 446, 692, 815 |
| Hpy99I | CGWCG | 8 cut(s) | 841, 873, 890, 907, 923, 937, 987, 1021 |
| HpyAV | CCTTC | 3 cut(s) | 43, 65, 724 |
| HpyCH4IV | ACGT | 2 cut(s) | 278, 895 |
| HpyCH4V | TGCA | 4 cut(s) | 41, 461, 717, 1001 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 111, 458, 714 |
| HpyF3I | CTNAG | 5 cut(s) | 45, 77, 108, 183, 396 |
| HpySE526I | ACGT | 2 cut(s) | 278, 895 |
| Hsp92I | GRCGYC | 2 cut(s) | 836, 953 |
| Hsp92II | CATG | 7 cut(s) | 335, 346, 356, 365, 418, 578, 818 |
| Kpn2I | TCCGGA | 1 cut(s) | 147 |
| Ksp22I | TGATCA | 1 cut(s) | 301 |
| Kzo9I | GATC | 5 cut(s) | 236, 301, 406, 442, 661 |
| LmnI | GCTCC | 2 cut(s) | 139, 179 |
| Lsp1109I | GCAGC | 1 cut(s) | 101 |
| LweI | GCATC | 2 cut(s) | 28, 439 |
| MaeI | CTAG | 5 cut(s) | 15, 96, 230, 674, 692 |
| MaeII | ACGT | 2 cut(s) | 278, 895 |
| MaeIII | GTNAC | 1 cut(s) | 949 |
| MalI | GATC | 5 cut(s) | 238, 303, 408, 444, 663 |
| MboI | GATC | 5 cut(s) | 236, 301, 406, 442, 661 |
| MboII | GAAGA | 8 cut(s) | 199, 320, 380, 383, 416, 437, 609, 799 |
| MhlI | GDGCHC | 1 cut(s) | 184 |
| MlyI | GAGTC | 1 cut(s) | 695 |
| MnlI | CCTC | 7 cut(s) | 103, 131, 155, 415, 551, 573, 596 |
| Mph1103I | ATGCAT | 1 cut(s) | 463 |
| MroI | TCCGGA | 1 cut(s) | 147 |
| MseI | TTAA | 5 cut(s) | 218, 480, 726, 747, 807 |
| MslI | CAYNNNNRTG | 1 cut(s) | 321 |
| MspCI | CTTAAG | 1 cut(s) | 806 |
| MspI | CCGG | 4 cut(s) | 5, 102, 131, 148 |
| MspR9I | CCNGG | 2 cut(s) | 138, 507 |
| Mva1269I | GAATGC | 1 cut(s) | 352 |
| MvaI | CCWGG | 2 cut(s) | 138, 507 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 111, 458, 714 |
| NdeI | CATATG | 1 cut(s) | 384 |
| NdeII | GATC | 5 cut(s) | 236, 301, 406, 442, 661 |
| NlaIII | CATG | 7 cut(s) | 335, 346, 356, 365, 418, 578, 818 |
| NlaIV | GGNNCC | 2 cut(s) | 135, 143 |
| NmuCI | GTSAC | 1 cut(s) | 949 |
| NsiI | ATGCAT | 1 cut(s) | 463 |
| NspV | TTCGAA | 1 cut(s) | 21 |
| PagI | TCATGA | 2 cut(s) | 352, 814 |
| PctI | GAATGC | 1 cut(s) | 352 |
| PfeI | GAWTC | 1 cut(s) | 358 |
| PkrI | GCNGC | 2 cut(s) | 116, 119 |
| PleI | GAGTC | 1 cut(s) | 694 |
| PpsI | GAGTC | 1 cut(s) | 694 |
| PpuMI | RGGWCCY | 1 cut(s) | 560 |
| PshBI | ATTAAT | 1 cut(s) | 747 |
| Psp124BI | GAGCTC | 1 cut(s) | 184 |
| Psp1406I | AACGTT | 1 cut(s) | 895 |
| Psp5II | RGGWCCY | 1 cut(s) | 560 |
| Psp6I | CCWGG | 2 cut(s) | 136, 505 |
| PspGI | CCWGG | 2 cut(s) | 136, 505 |
| PspN4I | GGNNCC | 2 cut(s) | 135, 143 |
| PspPI | GGNCC | 5 cut(s) | 52, 99, 104, 142, 560 |
| PspPPI | RGGWCCY | 1 cut(s) | 560 |
| RseI | CAYNNNNRTG | 1 cut(s) | 321 |
| SacI | GAGCTC | 1 cut(s) | 184 |
| SaqAI | TTAA | 5 cut(s) | 218, 480, 726, 747, 807 |
| SatI | GCNGC | 2 cut(s) | 115, 118 |
| Sau3AI | GATC | 5 cut(s) | 236, 301, 406, 442, 661 |
| Sau96I | GGNCC | 5 cut(s) | 52, 99, 104, 142, 560 |
| SchI | GAGTC | 1 cut(s) | 695 |
| ScrFI | CCNGG | 2 cut(s) | 138, 507 |
| SduI | GDGCHC | 1 cut(s) | 184 |
| SetI | ASST | 9 cut(s) | 46, 184, 235, 281, 511, 562, 766, 795, 898 |
| SfaNI | GCATC | 2 cut(s) | 28, 439 |
| SfuI | TTCGAA | 1 cut(s) | 21 |
| SinI | GGWCC | 2 cut(s) | 99, 560 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 321 |
| SmlI | CTYRAG | 2 cut(s) | 122, 806 |
| SmoI | CTYRAG | 2 cut(s) | 122, 806 |
| SsiI | CCGC | 1 cut(s) | 118 |
| SspI | AATATT | 2 cut(s) | 702, 1028 |
| SspMI | CTAG | 5 cut(s) | 15, 96, 230, 674, 692 |
| SstI | GAGCTC | 1 cut(s) | 184 |
| StyD4I | CCNGG | 2 cut(s) | 136, 505 |
| StyI | CCWWGG | 1 cut(s) | 793 |
| TaiI | ACGT | 2 cut(s) | 281, 898 |
| TaqI | TCGA | 2 cut(s) | 21, 634 |
| TauI | GCSGC | 1 cut(s) | 120 |
| TfiI | GAWTC | 1 cut(s) | 358 |
| Tru1I | TTAA | 5 cut(s) | 218, 480, 726, 747, 807 |
| Tru9I | TTAA | 5 cut(s) | 218, 480, 726, 747, 807 |
| TscAI | CASTG | 1 cut(s) | 400 |
| TseFI | GTSAC | 1 cut(s) | 949 |
| TseI | GCWGC | 1 cut(s) | 114 |
| Tsp45I | GTSAC | 1 cut(s) | 949 |
| TspDTI | ATGAA | 5 cut(s) | 339, 351, 359, 417, 831 |
| TspGWI | ACGGA | 1 cut(s) | 936 |
| TspRI | CASTG | 1 cut(s) | 400 |
| Vha464I | CTTAAG | 1 cut(s) | 806 |
| VpaK11BI | GGWCC | 2 cut(s) | 99, 560 |
| VspI | ATTAAT | 1 cut(s) | 747 |
| XapI | RAATTY | 3 cut(s) | 23, 158, 911 |
| XbaI | TCTAGA | 1 cut(s) | 691 |
| XspI | CTAG | 5 cut(s) | 15, 96, 230, 674, 692 |
| Zsp2I | ATGCAT | 1 cut(s) | 463 |