Rmu_sc0000898.1_g000072

DNA-binding transcription factor activity, RNA polymerase II-specific

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000898.1
Physical Location & Seq
Forward (+)
318947 .. 321576
2630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000898.1_g000072.1.cds

Sequence Viewer

Length: 1038 bp
atgccggaaggggctagtttcgaatttaggaaaactgatgcacctgagaaggcccttcaagttctgaacattgttctgagagagttgcctacttctaggaccggccctgagggctgccgcctcaagccaccggctcctgggggcctccggagtttggaatttctaaaacacaagtctggagctcagaagagaaaagaaaaggaacaacaagaagcattaactcaatctctagctggatcacttgataagtattttgggggaaacaaaaaagcagaaacgtcagttcaaaatgtggtgaatgatcaggaagatgagcataataatgaacaacatgatgaacccatgaatgctcatgagaatcatggtgaagaagaaaaagagcatatgattgacactgagaatgaagatcaactcatggatgaggaagataatgatagaatggatcaagatgccccaaatgcatatttcaatgagcaaattaactttcctttgaatgttgatgacccaggtaattgggataagattgactacaatatcagagactttttggttgaaagaggtcctcaaagagaccatgattacaattttcccaaagatagtagaggcagacatttttcttcagaacatttctttcgatatttaccaaatggcgagaagcaagatcggaattggctagtgtattcagagtctctagatagaatattttgcttttgttgcaagttgtttaagaaggatgagcagaaaattaatttgggcaacatagctggtgtaggatacaaagattggaagaaccttggtcgtaggcttaagggtcatgaaacaatgccgttggtggcgtcgccaatgttattttccacggcaattccccgtcgcaagactattagcgacggcaaacgtttgccgtcgcaagaattttgcgacggaaaaatgccgtcgcaaataccaatggtgacgccaccaactgctactgaagttttttgccgtcgccaaaagtcatttgcaacggcaaaaatgccgtcgcaaaaatattttttatga

Protein Analysis

345

Amino Acids

39.82

Weight (kDa)

5.78

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 147
AciI CCGC 1 cut(s) 118
AclI AACGTT 1 cut(s) 895
AclWI GGATC 2 cut(s) 244, 450
AcsI RAATTY 3 cut(s) 23, 158, 911
AcuI CTGAAG 2 cut(s) 603, 990
AcyI GRCGYC 2 cut(s) 836, 953
AfiI CCNNNNNNNGG 2 cut(s) 137, 154
AflII CTTAAG 1 cut(s) 806
AgsI TTSAA 5 cut(s) 59, 287, 469, 493, 554
AjnI CCWGG 2 cut(s) 136, 505
AjuI GAANNNNNNNTTGG 4 cut(s) 734, 766, 835, 867
AluBI AGCT 3 cut(s) 182, 233, 764
AluI AGCT 3 cut(s) 182, 233, 764
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 3 cut(s) 534, 564, 693
AlwI GGATC 2 cut(s) 244, 450
Aor13HI TCCGGA 1 cut(s) 147
AoxI GGCC 3 cut(s) 51, 103, 142
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 3 cut(s) 23, 158, 911
ArsI GACNNNNNNTTYG 2 cut(s) 1001, 1033
AseI ATTAAT 1 cut(s) 747
AspS9I GGNCC 5 cut(s) 52, 99, 104, 142, 560
AsuHPI GGTGA 3 cut(s) 307, 377, 961
AsuII TTCGAA 1 cut(s) 21
AvaII GGWCC 2 cut(s) 99, 560
AxyI CCTNAGG 1 cut(s) 108
BanII GRGCYC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 101
BceAI ACGGC 8 cut(s) 811, 873, 886, 904, 916, 966, 1000, 1020
BciT130I CCWGG 2 cut(s) 138, 507
BciVI GTATCC 1 cut(s) 767
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 3 cut(s) 534, 564, 693
BfaI CTAG 5 cut(s) 15, 96, 230, 674, 692
BfrI CTTAAG 1 cut(s) 806
BfuI GTATCC 1 cut(s) 767
BglI GCCNNNNNGGC 1 cut(s) 111
BisI GCNGC 2 cut(s) 115, 118
BlsI GCNGC 2 cut(s) 116, 119
Bme1390I CCNGG 2 cut(s) 138, 507
Bme18I GGWCC 2 cut(s) 99, 560
BmgT120I GGNCC 5 cut(s) 52, 99, 104, 142, 560
BmiI GGNNCC 2 cut(s) 135, 143
BmrFI CCNGG 2 cut(s) 138, 507
BmsI GCATC 2 cut(s) 28, 439
BpmI CTGGAG 1 cut(s) 198
Bpu14I TTCGAA 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 107
BsaHI GRCGYC 2 cut(s) 836, 953
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 4 cut(s) 137, 505, 793, 855
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 154
Bse118I RCCGGY 2 cut(s) 101, 130
Bse21I CCTNAGG 1 cut(s) 108
BseAI TCCGGA 1 cut(s) 147
BseBI CCWGG 2 cut(s) 138, 507
BseDI CCNNGG 4 cut(s) 137, 505, 793, 855
BseGI GGATG 2 cut(s) 424, 739
BseLI CCNNNNNNNGG 2 cut(s) 137, 154
BseMII CTCAG 5 cut(s) 36, 68, 99, 197, 387
BseXI GCAGC 1 cut(s) 101
BshFI GGCC 3 cut(s) 53, 105, 144
BsiHKAI GWGCWC 1 cut(s) 184
BsiSI CCGG 4 cut(s) 5, 102, 131, 148
BslI CCNNNNNNNGG 2 cut(s) 137, 154
BsmAI GTCTC 3 cut(s) 534, 564, 693
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 3 cut(s) 53, 105, 144
Bso31I GGTCTC 1 cut(s) 564
Bsp119I TTCGAA 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 184
Bsp13I TCCGGA 1 cut(s) 147
Bsp143I GATC 5 cut(s) 236, 301, 406, 442, 661
BspACI CCGC 1 cut(s) 118
BspANI GGCC 3 cut(s) 53, 105, 144
BspCNI CTCAG 5 cut(s) 37, 69, 100, 196, 388
BspEI TCCGGA 1 cut(s) 147
BspHI TCATGA 2 cut(s) 352, 814
BspLI GGNNCC 2 cut(s) 135, 143
BspPI GGATC 2 cut(s) 244, 450
BspT104I TTCGAA 1 cut(s) 21
BspTI CTTAAG 1 cut(s) 806
BspTNI GGTCTC 1 cut(s) 564
BsrFI RCCGGY 2 cut(s) 101, 130
BssAI RCCGGY 2 cut(s) 101, 130
BssECI CCNNGG 4 cut(s) 137, 505, 793, 855
BssMI GATC 5 cut(s) 236, 301, 406, 442, 661
BssNI GRCGYC 2 cut(s) 836, 953
BssT1I CCWWGG 1 cut(s) 793
Bst2UI CCWGG 2 cut(s) 138, 507
Bst6I CTCTTC 1 cut(s) 182
BstACI GRCGYC 2 cut(s) 836, 953
BstAFI CTTAAG 1 cut(s) 806
BstBI TTCGAA 1 cut(s) 21
BstDEI CTNAG 5 cut(s) 45, 77, 108, 183, 396
BstDSI CCRYGG 1 cut(s) 855
BstF5I GGATG 2 cut(s) 424, 739
BstKTI GATC 5 cut(s) 239, 304, 409, 445, 664
BstMAI GTCTC 3 cut(s) 534, 564, 693
BstMBI GATC 5 cut(s) 236, 301, 406, 442, 661
BstMWI GCNNNNNNNGC 3 cut(s) 111, 458, 714
BstNI CCWGG 2 cut(s) 138, 507
BstSCI CCNGG 2 cut(s) 136, 505
BstV1I GCAGC 1 cut(s) 101
BstXI CCANNNNNNTGG 1 cut(s) 513
Bsu36I CCTNAGG 1 cut(s) 108
BsuI GTATCC 1 cut(s) 767
BsuRI GGCC 3 cut(s) 53, 105, 144
BtgI CCRYGG 1 cut(s) 855
BtsCI GGATG 2 cut(s) 424, 739
BtsIMutI CAGTG 1 cut(s) 393
CciI TCATGA 2 cut(s) 352, 814
Cfr10I RCCGGY 2 cut(s) 101, 130
Cfr13I GGNCC 5 cut(s) 52, 99, 104, 142, 560
CseI GACGC 2 cut(s) 825, 961
CviAII CATG 7 cut(s) 332, 343, 353, 362, 415, 575, 815
DdeI CTNAG 5 cut(s) 45, 77, 108, 183, 396
DpnI GATC 5 cut(s) 238, 303, 408, 444, 663
DpnII GATC 5 cut(s) 236, 301, 406, 442, 661
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 793
Eco24I GRGCYC 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 564
Eco47I GGWCC 2 cut(s) 99, 560
Eco53kI GAGCTC 1 cut(s) 182
Eco57I CTGAAG 2 cut(s) 603, 990
Eco81I CCTNAGG 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 182
EcoO109I RGGNCCY 3 cut(s) 52, 142, 560
EcoRII CCWGG 2 cut(s) 136, 505
EcoT14I CCWWGG 1 cut(s) 793
EcoT22I ATGCAT 1 cut(s) 463
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 793
FaeI CATG 7 cut(s) 335, 346, 356, 365, 418, 578, 818
FatI CATG 7 cut(s) 331, 342, 352, 361, 414, 574, 814
FauNDI CATATG 1 cut(s) 384
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 115, 118
FokI GGATG 2 cut(s) 431, 746
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 2 cut(s) 115, 118
FspBI CTAG 5 cut(s) 15, 96, 230, 674, 692
GluI GCNGC 2 cut(s) 115, 118
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 3 cut(s) 53, 105, 144
HapII CCGG 4 cut(s) 5, 102, 131, 148
HgaI GACGC 2 cut(s) 825, 961
Hin1I GRCGYC 2 cut(s) 836, 953
Hin1II CATG 7 cut(s) 335, 346, 356, 365, 418, 578, 818
HinfI GANTC 2 cut(s) 358, 686
HpaII CCGG 4 cut(s) 5, 102, 131, 148
HphI GGTGA 3 cut(s) 307, 377, 961
Hpy188I TCNGA 7 cut(s) 66, 78, 186, 539, 622, 666, 685
Hpy188III TCNNGA 7 cut(s) 148, 177, 305, 353, 446, 692, 815
Hpy99I CGWCG 8 cut(s) 841, 873, 890, 907, 923, 937, 987, 1021
HpyAV CCTTC 3 cut(s) 43, 65, 724
HpyCH4IV ACGT 2 cut(s) 278, 895
HpyCH4V TGCA 4 cut(s) 41, 461, 717, 1001
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 458, 714
HpyF3I CTNAG 5 cut(s) 45, 77, 108, 183, 396
HpySE526I ACGT 2 cut(s) 278, 895
Hsp92I GRCGYC 2 cut(s) 836, 953
Hsp92II CATG 7 cut(s) 335, 346, 356, 365, 418, 578, 818
Kpn2I TCCGGA 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 5 cut(s) 236, 301, 406, 442, 661
LmnI GCTCC 2 cut(s) 139, 179
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 2 cut(s) 28, 439
MaeI CTAG 5 cut(s) 15, 96, 230, 674, 692
MaeII ACGT 2 cut(s) 278, 895
MaeIII GTNAC 1 cut(s) 949
MalI GATC 5 cut(s) 238, 303, 408, 444, 663
MboI GATC 5 cut(s) 236, 301, 406, 442, 661
MboII GAAGA 8 cut(s) 199, 320, 380, 383, 416, 437, 609, 799
MhlI GDGCHC 1 cut(s) 184
MlyI GAGTC 1 cut(s) 695
MnlI CCTC 7 cut(s) 103, 131, 155, 415, 551, 573, 596
Mph1103I ATGCAT 1 cut(s) 463
MroI TCCGGA 1 cut(s) 147
MseI TTAA 5 cut(s) 218, 480, 726, 747, 807
MslI CAYNNNNRTG 1 cut(s) 321
MspCI CTTAAG 1 cut(s) 806
MspI CCGG 4 cut(s) 5, 102, 131, 148
MspR9I CCNGG 2 cut(s) 138, 507
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 2 cut(s) 138, 507
MwoI GCNNNNNNNGC 3 cut(s) 111, 458, 714
NdeI CATATG 1 cut(s) 384
NdeII GATC 5 cut(s) 236, 301, 406, 442, 661
NlaIII CATG 7 cut(s) 335, 346, 356, 365, 418, 578, 818
NlaIV GGNNCC 2 cut(s) 135, 143
NmuCI GTSAC 1 cut(s) 949
NsiI ATGCAT 1 cut(s) 463
NspV TTCGAA 1 cut(s) 21
PagI TCATGA 2 cut(s) 352, 814
PctI GAATGC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 2 cut(s) 116, 119
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PpuMI RGGWCCY 1 cut(s) 560
PshBI ATTAAT 1 cut(s) 747
Psp124BI GAGCTC 1 cut(s) 184
Psp1406I AACGTT 1 cut(s) 895
Psp5II RGGWCCY 1 cut(s) 560
Psp6I CCWGG 2 cut(s) 136, 505
PspGI CCWGG 2 cut(s) 136, 505
PspN4I GGNNCC 2 cut(s) 135, 143
PspPI GGNCC 5 cut(s) 52, 99, 104, 142, 560
PspPPI RGGWCCY 1 cut(s) 560
RseI CAYNNNNRTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 5 cut(s) 218, 480, 726, 747, 807
SatI GCNGC 2 cut(s) 115, 118
Sau3AI GATC 5 cut(s) 236, 301, 406, 442, 661
Sau96I GGNCC 5 cut(s) 52, 99, 104, 142, 560
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 2 cut(s) 138, 507
SduI GDGCHC 1 cut(s) 184
SetI ASST 9 cut(s) 46, 184, 235, 281, 511, 562, 766, 795, 898
SfaNI GCATC 2 cut(s) 28, 439
SfuI TTCGAA 1 cut(s) 21
SinI GGWCC 2 cut(s) 99, 560
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 122, 806
SmoI CTYRAG 2 cut(s) 122, 806
SsiI CCGC 1 cut(s) 118
SspI AATATT 2 cut(s) 702, 1028
SspMI CTAG 5 cut(s) 15, 96, 230, 674, 692
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 2 cut(s) 136, 505
StyI CCWWGG 1 cut(s) 793
TaiI ACGT 2 cut(s) 281, 898
TaqI TCGA 2 cut(s) 21, 634
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 5 cut(s) 218, 480, 726, 747, 807
Tru9I TTAA 5 cut(s) 218, 480, 726, 747, 807
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 949
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 949
TspDTI ATGAA 5 cut(s) 339, 351, 359, 417, 831
TspGWI ACGGA 1 cut(s) 936
TspRI CASTG 1 cut(s) 400
Vha464I CTTAAG 1 cut(s) 806
VpaK11BI GGWCC 2 cut(s) 99, 560
VspI ATTAAT 1 cut(s) 747
XapI RAATTY 3 cut(s) 23, 158, 911
XbaI TCTAGA 1 cut(s) 691
XspI CTAG 5 cut(s) 15, 96, 230, 674, 692
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.