Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005506.1

Orthogroup ID

OG0000215

Physical Location & Seq

Genomic Coordinates Reverse (-)

31475 .. 32179

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005506.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgcctcccattagaaaacacaagtctggagctcagaagagaaaagaaaaggaacgacaagaagcattaactcaatctctagctggatcacttgataagtattttgggggaaacaaaaaggcagaaacgtcagttcaaaatgtggtgaatgatcaggaagatgagtataataatgaacaacatgatgaacccatgaatgctcatgataatcatggtgaagaagaaagagagcatatgattgacactgagaatgaagatcaactcatggatgaggaagataatgatagtatggatcaagatgtccaaaatgaagatttcaatgagcaaattaactttcctttgaatgttgatgacccaggtaattgggataagattgacaataatatcagagactttttggttgaaagaggtcctcaaagagaccatgattacaattttcccaaagatagtagagacagacatttttcttcagaacatttctttcgatatttaccaaatggcgagaagcaagatcggaattggctagtgtattcagagtctctagatagaatatcttgcttttgctgcaagttgtttaagaaggacgagcagaaaattaatttgggcaacatagctggtgtaggatacaaagattggaagaaccttggttggaggcttaagggtcatgaaacaagtaatgtgcatgcttattgtatgagtagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FCS

Protein Analysis

234

Amino Acids

27.64

Weight (kDa)

4.94

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca	FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica	MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis	pycom05g13550 pycom11g18320
rosa_chinensis	RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora	Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii	Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa	Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha	Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana	Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	94, 300
AcuI	CTGAAG	1 cut(s)	453
AflII	CTTAAG	1 cut(s)	656
AgsI	TTSAA	4 cut(s)	137, 319, 343, 404
AjnI	CCWGG	1 cut(s)	355
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AluBI	AGCT	3 cut(s)	32, 83, 614
AluI	AGCT	3 cut(s)	32, 83, 614
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	4 cut(s)	384, 414, 447, 543
AlwI	GGATC	2 cut(s)	94, 300
ApeKI	GCWGC	1 cut(s)	564
AseI	ATTAAT	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	157, 227
AvaII	GGWCC	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	551
BciT130I	CCWGG	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	617
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	4 cut(s)	384, 414, 447, 543
BfaI	CTAG	3 cut(s)	80, 524, 542
BfrI	CTTAAG	1 cut(s)	656
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	1 cut(s)	565
BlsI	GCNGC	1 cut(s)	566
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	355, 643
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	355, 643
BseGI	GGATG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	47, 237
BseXI	GCAGC	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	34
BsmAI	GTCTC	4 cut(s)	384, 414, 447, 543
BsmI	GAATGC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	5 cut(s)	86, 151, 256, 292, 511
BspCNI	CTCAG	2 cut(s)	46, 238
BspHI	TCATGA	2 cut(s)	202, 664
BspPI	GGATC	2 cut(s)	94, 300
BspTI	CTTAAG	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	355, 643
BssMI	GATC	5 cut(s)	86, 151, 256, 292, 511
BssT1I	CCWWGG	1 cut(s)	643
Bst2UI	CCWGG	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	32
BstAFI	CTTAAG	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	2 cut(s)	33, 246
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	5 cut(s)	89, 154, 259, 295, 514
BstMAI	GTCTC	4 cut(s)	384, 414, 447, 543
BstMBI	GATC	5 cut(s)	86, 151, 256, 292, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	564
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	551
BstXI	CCANNNNNNTGG	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	617
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	684
CciI	TCATGA	2 cut(s)	202, 664
Cfr13I	GGNCC	1 cut(s)	410
CviAII	CATG	8 cut(s)	182, 193, 203, 212, 265, 425, 665, 683
CviJI	RGCY	5 cut(s)	32, 83, 523, 614, 655
CviKI_1	RGCY	5 cut(s)	32, 83, 523, 614, 655
DdeI	CTNAG	2 cut(s)	33, 246
DpnI	GATC	5 cut(s)	88, 153, 258, 294, 513
DpnII	GATC	5 cut(s)	86, 151, 256, 292, 511
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	643
Eco24I	GRGCYC	1 cut(s)	34
Eco31I	GGTCTC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	453
EcoICRI	GAGCTC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	643
FaeI	CATG	8 cut(s)	185, 196, 206, 215, 268, 428, 668, 686
FatI	CATG	8 cut(s)	181, 192, 202, 211, 264, 424, 664, 682
FauNDI	CATATG	1 cut(s)	234
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	565
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	565
FspBI	CTAG	3 cut(s)	80, 524, 542
GluI	GCNGC	1 cut(s)	565
GsuI	CTGGAG	1 cut(s)	48
Hin1II	CATG	8 cut(s)	185, 196, 206, 215, 268, 428, 668, 686
HinfI	GANTC	1 cut(s)	536
HphI	GGTGA	2 cut(s)	157, 227
Hpy188I	TCNGA	5 cut(s)	36, 389, 472, 516, 535
Hpy188III	TCNNGA	6 cut(s)	27, 155, 203, 296, 542, 665
HpyAV	CCTTC	1 cut(s)	574
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	2 cut(s)	567, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	564
HpyF3I	CTNAG	2 cut(s)	33, 246
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	8 cut(s)	185, 196, 206, 215, 268, 428, 668, 686
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	5 cut(s)	86, 151, 256, 292, 511
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	6 cut(s)	12, 69, 140, 342, 369, 600
Lsp1109I	GCAGC	1 cut(s)	551
MaeI	CTAG	3 cut(s)	80, 524, 542
MaeII	ACGT	1 cut(s)	128
MalI	GATC	5 cut(s)	88, 153, 258, 294, 513
MboI	GATC	5 cut(s)	86, 151, 256, 292, 511
MboII	GAAGA	9 cut(s)	49, 170, 230, 233, 266, 287, 323, 459, 649
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	6 cut(s)	327, 361, 433, 517, 594, 598
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	629
MnlI	CCTC	5 cut(s)	15, 265, 401, 423, 645
MseI	TTAA	5 cut(s)	68, 330, 576, 597, 657
MspCI	CTTAAG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	564
NdeI	CATATG	1 cut(s)	234
NdeII	GATC	5 cut(s)	86, 151, 256, 292, 511
NlaIII	CATG	8 cut(s)	185, 196, 206, 215, 268, 428, 668, 686
NspI	RCATGY	1 cut(s)	686
PaeI	GCATGC	1 cut(s)	686
PagI	TCATGA	2 cut(s)	202, 664
PctI	GAATGC	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	566
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
PpuMI	RGGWCCY	1 cut(s)	410
PshBI	ATTAAT	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	410
PspPPI	RGGWCCY	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	34
SaqAI	TTAA	5 cut(s)	68, 330, 576, 597, 657
SatI	GCNGC	1 cut(s)	565
Sau3AI	GATC	5 cut(s)	86, 151, 256, 292, 511
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	7 cut(s)	34, 85, 131, 361, 412, 616, 645
SinI	GGWCC	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SphI	GCATGC	1 cut(s)	686
Sse9I	AATT	6 cut(s)	327, 361, 433, 517, 594, 598
SspMI	CTAG	3 cut(s)	80, 524, 542
SstI	GAGCTC	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	643
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	484
TasI	AATT	6 cut(s)	327, 361, 433, 517, 594, 598
Tru1I	TTAA	5 cut(s)	68, 330, 576, 597, 657
Tru9I	TTAA	5 cut(s)	68, 330, 576, 597, 657
TscAI	CASTG	1 cut(s)	250
TseI	GCWGC	1 cut(s)	564
TspDTI	ATGAA	6 cut(s)	189, 201, 209, 267, 324, 681
TspRI	CASTG	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	597
XbaI	TCTAGA	1 cut(s)	541
XceI	RCATGY	1 cut(s)	686
XspI	CTAG	3 cut(s)	80, 524, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.