Rroxscaffold_2G00090380

Domain of unknown function (DUF4371)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000215
Physical Location & Seq
Forward (+)
12132075 .. 12135119
3045 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090380.1

Sequence Viewer

Length: 579 bp
ATGGTGATTTGGTATGAGATGTTGTTTGCTCTTAATAGGATTAGCAAAGTGCTGCAGTCTAATGATATGCAAATTAGTGTTGCTATAGCTGAAGTAAAAGGTCTAATTGCTTGGCTTGATAAGTTTAGAGAAACTGGCTTCACAGATGCAATGATTACTGCTAAAGAAATTGCTGCTGCATTAGATGTTGATCCTATTCTTCCGGAAAAGAGTCCAATTCAAAGAAAAAGATTTTTTGATGAAAGCAGCAGTGAGCCATGTCCATCATCTTCAGGTGAGGAATCTTTTAGAGTGCATTATTTCTTGTATATTGTAGATCAAGCTAAGGGATCATTAAATAGAAGGTTTGAACAATATCAACACTATGATGATATCTTTGGATTTTTATTCACTTCAGAAACTTTGAATTCCTTGAATGATAATGATATGAAAGCTGCTTGTATTCATCTTGAGAATGTTTTGAGACATGGAGAGAGTTCAGATGTTGATGGGGAAGATCTGTTTAGAGAGCTAAAACTCTTAAGGGAGATATTACCTGGACAAAAGATGACAGCTAGTGATATATTGAATTTCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

192

Amino Acids

22.01

Weight (kDa)

4.8

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 202
AclWI GGATC 2 cut(s) 185, 337
AcsI RAATTY 2 cut(s) 406, 568
AcuI CTGAAG 3 cut(s) 111, 255, 378
AflII CTTAAG 1 cut(s) 520
AgsI TTSAA 5 cut(s) 221, 350, 406, 415, 568
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 5 cut(s) 89, 323, 434, 511, 554
AluI AGCT 5 cut(s) 89, 323, 434, 511, 554
Alw26I GTCTC 1 cut(s) 457
AlwI GGATC 2 cut(s) 185, 337
Aor13HI TCCGGA 1 cut(s) 202
ApeKI GCWGC 5 cut(s) 52, 173, 176, 246, 434
ApoI RAATTY 2 cut(s) 406, 568
AsuHPI GGTGA 2 cut(s) 16, 287
BbvI GCAGC 5 cut(s) 39, 160, 163, 258, 421
BccI CCATC 2 cut(s) 271, 482
BciT130I CCWGG 1 cut(s) 537
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 1 cut(s) 555
BfmI CTRYAG 2 cut(s) 53, 84
BfrI CTTAAG 1 cut(s) 520
BglII AGATCT 1 cut(s) 496
BisI GCNGC 5 cut(s) 53, 174, 177, 247, 435
BlsI GCNGC 5 cut(s) 54, 175, 178, 248, 436
Bme1390I CCNGG 1 cut(s) 537
BmrFI CCNGG 1 cut(s) 537
BmsI GCATC 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 470
BsaBI GATNNNNATC 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 189
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 1 cut(s) 537
BseJI GATNNNNATC 1 cut(s) 189
BseMI GCAATG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 139
BseXI GCAGC 5 cut(s) 39, 160, 163, 258, 421
BsiSI CCGG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 457
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 4 cut(s) 190, 316, 329, 496
BspEI TCCGGA 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 57
BspPI GGATC 2 cut(s) 185, 337
BspTI CTTAAG 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 156
BsrI ACTGG 1 cut(s) 139
BssMI GATC 4 cut(s) 190, 316, 329, 496
Bst2UI CCWGG 1 cut(s) 537
BstAFI CTTAAG 1 cut(s) 520
BstDEI CTNAG 1 cut(s) 324
BstKTI GATC 4 cut(s) 193, 319, 332, 499
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 4 cut(s) 190, 316, 329, 496
BstNI CCWGG 1 cut(s) 537
BstSCI CCNGG 1 cut(s) 535
BstSFI CTRYAG 2 cut(s) 53, 84
BstV1I GCAGC 5 cut(s) 39, 160, 163, 258, 421
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
CviAII CATG 2 cut(s) 258, 467
CviJI RGCY 8 cut(s) 89, 115, 138, 256, 323, 434, 511, 554
CviKI_1 RGCY 8 cut(s) 89, 115, 138, 256, 323, 434, 511, 554
DdeI CTNAG 1 cut(s) 324
DpnI GATC 4 cut(s) 192, 318, 331, 498
DpnII GATC 4 cut(s) 190, 316, 329, 496
Eco32I GATATC 1 cut(s) 373
Eco57I CTGAAG 3 cut(s) 111, 255, 378
EcoRI GAATTC 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 535
EcoRV GATATC 1 cut(s) 373
FaeI CATG 2 cut(s) 261, 470
FatI CATG 2 cut(s) 257, 466
Fnu4HI GCNGC 5 cut(s) 53, 174, 177, 247, 435
Fsp4HI GCNGC 5 cut(s) 53, 174, 177, 247, 435
FspBI CTAG 1 cut(s) 555
GluI GCNGC 5 cut(s) 53, 174, 177, 247, 435
HapII CCGG 1 cut(s) 203
Hin1II CATG 2 cut(s) 261, 470
HinfI GANTC 2 cut(s) 211, 281
HpaII CCGG 1 cut(s) 203
HphI GGTGA 2 cut(s) 16, 287
Hpy188I TCNGA 2 cut(s) 397, 481
Hpy188III TCNNGA 2 cut(s) 203, 449
HpyAV CCTTC 1 cut(s) 336
HpyCH4V TGCA 5 cut(s) 55, 70, 149, 179, 295
HpyF3I CTNAG 1 cut(s) 324
Hsp92II CATG 2 cut(s) 261, 470
Kpn2I TCCGGA 1 cut(s) 202
Kzo9I GATC 4 cut(s) 190, 316, 329, 496
LpnPI CCDG 5 cut(s) 120, 216, 258, 522, 549
Lsp1109I GCAGC 5 cut(s) 39, 160, 163, 258, 421
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 555
MalI GATC 4 cut(s) 192, 318, 331, 498
MboI GATC 4 cut(s) 190, 316, 329, 496
MboII GAAGA 3 cut(s) 191, 261, 506
MflI RGATCY 1 cut(s) 496
MluCI AATT 6 cut(s) 72, 105, 168, 216, 406, 568
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 1 cut(s) 271
MroI TCCGGA 1 cut(s) 202
MseI TTAA 3 cut(s) 33, 335, 521
MslI CAYNNNNRTG 1 cut(s) 366
MspCI CTTAAG 1 cut(s) 520
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 537
MvaI CCWGG 1 cut(s) 537
NdeII GATC 4 cut(s) 190, 316, 329, 496
NlaIII CATG 2 cut(s) 261, 470
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 5 cut(s) 54, 175, 178, 248, 436
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 535
PspGI CCWGG 1 cut(s) 535
PstI CTGCAG 1 cut(s) 57
PsuI RGATCY 1 cut(s) 496
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 3 cut(s) 33, 335, 521
SatI GCNGC 5 cut(s) 53, 174, 177, 247, 435
Sau3AI GATC 4 cut(s) 190, 316, 329, 496
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 537
SetI ASST 9 cut(s) 91, 103, 277, 325, 347, 436, 513, 538, 556
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 2 cut(s) 53, 84
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 2 cut(s) 449, 520
SmoI CTYRAG 2 cut(s) 449, 520
Sse9I AATT 6 cut(s) 72, 105, 168, 216, 406, 568
SspMI CTAG 1 cut(s) 555
StyD4I CCNGG 1 cut(s) 535
TasI AATT 6 cut(s) 72, 105, 168, 216, 406, 568
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 3 cut(s) 33, 335, 521
Tru9I TTAA 3 cut(s) 33, 335, 521
TscAI CASTG 1 cut(s) 256
TseI GCWGC 5 cut(s) 52, 173, 176, 246, 434
TspDTI ATGAA 3 cut(s) 255, 434, 443
TspRI CASTG 1 cut(s) 256
Vha464I CTTAAG 1 cut(s) 520
XapI RAATTY 2 cut(s) 406, 568
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.