RchiOBHm_Chr3g0452101

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000215
Physical Location & Seq
Reverse (-)
2892616 .. 2895831
3216 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41931

Sequence Viewer

Length: 1029 bp
ATGTTTCCTCGGAAACAACTCTCGGGTTCTCAAAAAAGAAAAAGAAAGAAAAGAGAAGAAGAAATTATTCAATCTCAACGGGGATCTTTAGATAAATATTTTGTTAAAGAAACAAATGAATCTGTTGAAGATCATGTTGAGAATTTAGTAAATGAACCTGAACTACAAATTCATTCTAATGAGTTTGTAGAAAATCAGAATGAGGTAAACGAAGAACCTGATGATATAGGTGAAAATGAAAGTGACGAAACAGAAAATAATGAAAATCTTTGCCATGATGAAATTATTGCCAATAAACTTGAATGCTTGAAATCATCAGCTGATTTGAATATTTTTGATCCTAGAGTCTGGGATAGTCTAGATTCAAAAATGAGAGACTTGCTTGTAGAAAAAGGGCCTATTACAGAAACTAATATCAACTTTCCTAAGGATGAATTAGAACAACAATCTGCTCAAGAGTCCTTTAGAACTGATTACTTTTTGATTTTAGTTGATATGGCTCTTTCTCAATTAAAAAGCAGGTTTGAACAAATGAAAACTTTTGAATCTATTTTTGGCTTCTTATTTGATGCATCAAAGTTAGCTCACTTGGATGATGATGAATTGAAAAGTCATTGTTTGAATCTTGAAAATGCTTTGAGAAAGGGTGATGGTTCTGATATTGATGCGAAATATTTGCTTATGGAGTTACAAATTTTGCAGGAGATGTTGCCGAATGAGGCATATGAAACAGATAGGCCTTGGACATCCATTCAAATTATGGAGTTTGCTAAAAAAATGGATATGTTTCCAAGTGTTATGGTTGCCTACAGGATTTTATTGACTATACCGGTGACGGTAGCATCCGCTGAAAGAAGTTTTTCAAAATTGAAGTTATTAAAGTCTTATCTTCGGACTACCATGACTCAAGATAGGCTGAATGGACTAGCTATGTTAACCATTGAAAGAAATATGTTGGCAAATGTTGACTACAAAAAGATGATTGATGATTTTGCTTCAAGAAATGCAAGAAGACATCATTTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

342

Amino Acids

39.94

Weight (kDa)

4.92

Isoelectric Point (pI)

49.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 252 - 318 1.7e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G35150 AT2G06500 AT2G16040 AT2G19960 AT2G19960 AT3G29638 AT3G29794 AT4G10200 AT4G10200 AT5G35475
fragaria_vesca FvH4_1g08455 FvH4_1g08761 FvH4_1g10851 FvH4_1g17271 FvH4_1g26762 FvH4_2g15031 FvH4_2g18762 FvH4_2g29241 FvH4_2g32571 FvH4_4g01531 FvH4_4g12942 FvH4_4g14421 FvH4_4g14431 FvH4_4g14434 FvH4_5g30891 FvH4_6g47641 FvH4_6g47642
malus_domestica MD01G1087700.v1.1 MD11G1104400.v1.1
pyrus_communis pycom05g13550 pycom11g18320
rosa_chinensis RchiOBHm_Chr1g0320361 RchiOBHm_Chr1g0321011 RchiOBHm_Chr1g0321921 RchiOBHm_Chr1g0377611 RchiOBHm_Chr1g0379061 RchiOBHm_Chr2g0106921 RchiOBHm_Chr2g0137341 RchiOBHm_Chr2g0139641 RchiOBHm_Chr2g0139651 RchiOBHm_Chr2g0144921 RchiOBHm_Chr2g0161851 RchiOBHm_Chr2g0172511 RchiOBHm_Chr3g0449931 RchiOBHm_Chr3g0452101 RchiOBHm_Chr3g0480551 RchiOBHm_Chr4g0427821 RchiOBHm_Chr4g0431861 RchiOBHm_Chr4g0435271 RchiOBHm_Chr5g0015121 RchiOBHm_Chr5g0031951 RchiOBHm_Chr5g0034331 RchiOBHm_Chr5g0059431 RchiOBHm_Chr6g0288531 RchiOBHm_Chr6g0308901 RchiOBHm_Chr7g0198801 RchiOBHm_Chr7g0198811 RchiOBHm_Chr7g0200001 RchiOBHm_Chr7g0205811 RchiOBHm_Chr7g0230921 RchiOBHm_Chr7g0233981
rosa_multiflora Rmu_sc0000475.1_g000004 Rmu_sc0000483.1_g000021 Rmu_sc0000551.1_g000007 Rmu_sc0000761.1_g000023 Rmu_sc0000898.1_g000072 Rmu_sc0001921.1_g000031 Rmu_sc0002804.1_g000009 Rmu_sc0002880.1_g000005 Rmu_sc0003207.1_g000046 Rmu_sc0003914.1_g000010 Rmu_sc0004165.1_g000089 Rmu_sc0004209.1_g000001 Rmu_sc0004402.1_g000017 Rmu_sc0004443.1_g000001 Rmu_sc0005506.1_g000007 Rmu_sc0005506.1_g000009 Rmu_sc0006443.1_g000001 Rmu_sc0008191.1_g000019 Rmu_sc0008328.1_g000004 Rmu_sc0009489.1_g000004 Rmu_sc0010368.1_g000012 Rmu_sc0010368.1_g000014 Rmu_sc0011232.1_g000005 Rmu_sc0011630.1_g000006 Rmu_sc0014780.1_g000001 Rmu_sc0028257.1_g000002 Rmu_sc0029902.1_g000001 Rmu_ssc0000386.1_g000041 Rmu_ssc0000434.1_g000020
rosa_roxburghii Rroxscaffold_2G00084750 Rroxscaffold_2G00090380 Rroxscaffold_2G00108310 Rroxscaffold_3G00235050 Rroxscaffold_3G00252220 Rroxscaffold_4G00323580 Rroxscaffold_5G00337920 Rroxscaffold_5G00370050 Rroxscaffold_7G00169180 Rroxscaffold_7G00200470
rosa_rugosa Rorug01G0156600.1 Rorug02G0305900 Rorug02G0362300 Rorug03G0111800 Rorug03G0273500 Rorug03G0340700 Rorug04G0196000 Rorug05G0251300 Rorug05G0465700 Rorug06G0031300 Rorug06G0170700 Rorug07G0226000 Rorug07G0263200
rosa_samantha Rh1CG203400 Rh1CG203500 Rh3AG212700 Rh3BG246300 Rh4BG318100 Rh6BG118800 Rh6DG105400 Rh7DG231500
rosa_wichuraiana Rw1G002740 Rw1G016740 Rw2G009190 Rw2G021330 Rw2G030170 Rw2G034650 Rw2G034990 Rw2G046190 Rw3G019490 Rw3G019500 Rw3G019510 Rw3G019990 Rw3G020480 Rw3G026090 Rw4G005490 Rw4G007090 Rw4G022920 Rw4G030140 Rw5G011030 Rw5G019330 Rw5G027260 Rw5G029990 Rw5G034080 Rw6G025080 Rw6G031390 Rw6G038690 Rw7G016630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 510
AciI CCGC 1 cut(s) 846
AclWI GGATC 2 cut(s) 91, 332
AcsI RAATTY 3 cut(s) 142, 168, 693
AgeI ACCGGT 1 cut(s) 829
AjuI GAANNNNNNNTTGG 2 cut(s) 537, 569
AluBI AGCT 3 cut(s) 320, 584, 929
AluI AGCT 3 cut(s) 320, 584, 929
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 2 cut(s) 91, 332
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 2 cut(s) 395, 737
ApoI RAATTY 3 cut(s) 142, 168, 693
AsiGI ACCGGT 1 cut(s) 829
Asp700I GAANNNNTTC 2 cut(s) 66, 859
AspS9I GGNCC 1 cut(s) 395
AsuHPI GGTGA 3 cut(s) 242, 659, 844
AvaI CYCGRG 1 cut(s) 22
AxyI CCTNAGG 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 1018
BccI CCATC 1 cut(s) 644
BcgI CGANNNNNNTGC 2 cut(s) 658, 692
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 3 cut(s) 342, 359, 926
BfmI CTRYAG 1 cut(s) 808
BfuAI ACCTGC 1 cut(s) 510
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 395
BmsI GCATC 4 cut(s) 559, 581, 655, 851
BpiI GAAGAC 1 cut(s) 1018
BpuEI CTTGAG 2 cut(s) 438, 891
BsaJI CCNNGG 2 cut(s) 8, 740
BsaWI WCCGGW 1 cut(s) 829
Bse118I RCCGGY 1 cut(s) 829
Bse21I CCTNAGG 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 8, 740
BseGI GGATG 4 cut(s) 436, 598, 746, 842
BshFI GGCC 2 cut(s) 397, 739
BshTI ACCGGT 1 cut(s) 829
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 1 cut(s) 830
BsmAI GTCTC 1 cut(s) 369
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 2 cut(s) 397, 739
BsoBI CYCGRG 1 cut(s) 22
Bsp143I GATC 3 cut(s) 83, 130, 337
BspACI CCGC 1 cut(s) 846
BspANI GGCC 2 cut(s) 397, 739
BspMI ACCTGC 1 cut(s) 510
BspPI GGATC 2 cut(s) 91, 332
BsrFI RCCGGY 1 cut(s) 829
BssAI RCCGGY 1 cut(s) 829
BssECI CCNNGG 2 cut(s) 8, 740
BssMI GATC 3 cut(s) 83, 130, 337
BssT1I CCWWGG 1 cut(s) 740
Bst4CI ACNGT 1 cut(s) 838
BstDEI CTNAG 1 cut(s) 426
BstF5I GGATG 4 cut(s) 436, 598, 746, 842
BstKTI GATC 3 cut(s) 86, 133, 340
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 3 cut(s) 83, 130, 337
BstSFI CTRYAG 1 cut(s) 808
BstV2I GAAGAC 1 cut(s) 1018
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
Bsu36I CCTNAGG 1 cut(s) 426
BsuRI GGCC 2 cut(s) 397, 739
BtsCI GGATG 4 cut(s) 436, 598, 746, 842
BveI ACCTGC 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 829
Cfr13I GGNCC 1 cut(s) 395
CspAI ACCGGT 1 cut(s) 829
CviAII CATG 3 cut(s) 134, 275, 901
CviJI RGCY 8 cut(s) 320, 397, 500, 558, 584, 739, 916, 929
CviKI_1 RGCY 8 cut(s) 320, 397, 500, 558, 584, 739, 916, 929
DdeI CTNAG 1 cut(s) 426
DpnI GATC 3 cut(s) 85, 132, 339
DpnII GATC 3 cut(s) 83, 130, 337
Eco130I CCWWGG 1 cut(s) 740
Eco147I AGGCCT 1 cut(s) 739
Eco81I CCTNAGG 1 cut(s) 426
Eco88I CYCGRG 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 395
EcoT14I CCWWGG 1 cut(s) 740
EcoT22I ATGCAT 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 740
FaeI CATG 3 cut(s) 137, 278, 904
FatI CATG 3 cut(s) 133, 274, 900
FauNDI CATATG 1 cut(s) 724
FokI GGATG 4 cut(s) 443, 605, 733, 829
FspBI CTAG 3 cut(s) 342, 359, 926
HaeIII GGCC 2 cut(s) 397, 739
HapII CCGG 1 cut(s) 830
Hin1II CATG 3 cut(s) 137, 278, 904
HincII GTYRAC 2 cut(s) 936, 967
HindII GTYRAC 2 cut(s) 936, 967
HinfI GANTC 7 cut(s) 119, 345, 362, 458, 545, 622, 904
HpaI GTTAAC 1 cut(s) 936
HpaII CCGG 1 cut(s) 830
HphI GGTGA 3 cut(s) 242, 659, 844
Hpy166II GTNNAC 3 cut(s) 208, 936, 967
Hpy188I TCNGA 4 cut(s) 12, 198, 658, 894
Hpy188III TCNNGA 5 cut(s) 359, 455, 626, 908, 999
Hpy8I GTNNAC 3 cut(s) 208, 936, 967
HpyCH4III ACNGT 1 cut(s) 838
HpyCH4V TGCA 3 cut(s) 572, 700, 1007
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 3 cut(s) 137, 278, 904
KspAI GTTAAC 1 cut(s) 936
Kzo9I GATC 3 cut(s) 83, 130, 337
LpnPI CCDG 7 cut(s) 171, 231, 334, 505, 686, 796, 843
LweI GCATC 4 cut(s) 559, 581, 655, 851
MaeI CTAG 3 cut(s) 342, 359, 926
MaeIII GTNAC 3 cut(s) 242, 687, 832
MalI GATC 3 cut(s) 85, 132, 339
MboI GATC 3 cut(s) 83, 130, 337
MboII GAAGA 6 cut(s) 68, 71, 140, 224, 881, 1023
MflI RGATCY 1 cut(s) 83
MlyI GAGTC 3 cut(s) 354, 467, 898
MnlI CCTC 3 cut(s) 18, 196, 712
Mph1103I ATGCAT 1 cut(s) 574
MroXI GAANNNNTTC 2 cut(s) 66, 859
MseI TTAA 4 cut(s) 105, 512, 878, 935
MslI CAYNNNNRTG 2 cut(s) 177, 591
MspA1I CMGCKG 2 cut(s) 320, 848
MspI CCGG 1 cut(s) 830
Mva1269I GAATGC 1 cut(s) 308
NdeI CATATG 1 cut(s) 724
NdeII GATC 3 cut(s) 83, 130, 337
NlaIII CATG 3 cut(s) 137, 278, 904
NmuCI GTSAC 2 cut(s) 242, 832
NsiI ATGCAT 1 cut(s) 574
PceI AGGCCT 1 cut(s) 739
PctI GAATGC 1 cut(s) 308
PdmI GAANNNNTTC 2 cut(s) 66, 859
PfeI GAWTC 4 cut(s) 119, 362, 545, 622
PinAI ACCGGT 1 cut(s) 829
PleI GAGTC 3 cut(s) 353, 466, 898
PpsI GAGTC 3 cut(s) 353, 466, 898
PspPI GGNCC 1 cut(s) 395
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PsuI RGATCY 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 320
RseI CAYNNNNRTG 2 cut(s) 177, 591
SaqAI TTAA 4 cut(s) 105, 512, 878, 935
Sau3AI GATC 3 cut(s) 83, 130, 337
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 3 cut(s) 354, 467, 898
SetI ASST 8 cut(s) 160, 207, 220, 232, 322, 524, 586, 931
SfaNI GCATC 4 cut(s) 559, 581, 655, 851
SfcI CTRYAG 1 cut(s) 808
SmiMI CAYNNNNRTG 2 cut(s) 177, 591
SmlI CTYRAG 2 cut(s) 453, 906
SmoI CTYRAG 2 cut(s) 453, 906
SseBI AGGCCT 1 cut(s) 739
SsiI CCGC 1 cut(s) 846
SspI AATATT 3 cut(s) 98, 331, 674
SspMI CTAG 3 cut(s) 342, 359, 926
StuI AGGCCT 1 cut(s) 739
StyI CCWWGG 1 cut(s) 740
TaaI ACNGT 1 cut(s) 838
TfiI GAWTC 4 cut(s) 119, 362, 545, 622
Tru1I TTAA 4 cut(s) 105, 512, 878, 935
Tru9I TTAA 4 cut(s) 105, 512, 878, 935
TseFI GTSAC 2 cut(s) 242, 832
Tsp45I GTSAC 2 cut(s) 242, 832
XapI RAATTY 3 cut(s) 142, 168, 693
XbaI TCTAGA 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 757
XmnI GAANNNNTTC 2 cut(s) 66, 859
XspI CTAG 3 cut(s) 342, 359, 926
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.